Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004125

Physical Location & Seq

Genomic Coordinates Forward (+)

12005559 .. 12006084

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1065400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAATCACATAAAACTCAACATGAGTCATTACCGGCTGCTGCAACCCCAGCCACCACTTCATGTCAAAAGAAGAAGAACGAGCAAGCCACTCTCTTGGAGGATGTAAAGGATCACATTAATGATTTTGTCAATGCATCTATGGATGAACACAAAACGTGCTTCAAGAAGAACATGCAGAAGATGTTTGGAATGTCAAAGAATGTTGCTGAGAGGAGTGTTGACACCAAGGAAGTTGAGAGTACTCTGCCCCTTCAAATCACAGTGGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.21

Weight (kDa)

6.9

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05570 AT4G39235 AT4G39235
fragaria_vesca	FvH4_2g08920 FvH4_4g27401
malus_domestica	MD05G1065400.v1.1 MD10G1075100.v1.1
prunus_persica	Prupe.8G064900_v2.0.a1 Prupe.8G064900_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1 Prupe.8G096200_v2.0.a1
pyrus_communis	pycom05g05680 pycom10g05870
rosa_chinensis	RchiOBHm_Chr4g0435221 RchiOBHm_Chr6g0264531
rosa_laevigata	RLG00000014246
rosa_multiflora	Rmu_sc0000578.1_g000012 Rmu_sc0005281.1_g000012 Rmu_ssc0000339.1_g000028
rosa_roxburghii	Rroxscaffold_176G00431880 Rroxscaffold_5G00376430
rosa_rugosa	Rorug04G0283200.1 Rorug06G0015700
rosa_samantha	Rh4BG347000 Rh4CG361600 Rh4DG341400 Rh6AG133000 Rh6BG130600 Rh6CG128800 Rh6DG116000
rosa_wichuraiana	Rw0G009750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	166, 257
AlwI	GGATC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	38, 41
AseI	ATTAAT	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	25, 28
BisI	GCNGC	2 cut(s)	39, 42
BlsI	GCNGC	2 cut(s)	40, 43
BmcAI	AGTACT	1 cut(s)	244
BmsI	GCATC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	109, 151
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	25, 28
BseYI	CCCAGC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	202
BspPI	GGATC	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	109, 151
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	25, 28
BstXI	CCANNNNNNTGG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	109, 151
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	3 cut(s)	23, 63, 175
CviJI	RGCY	3 cut(s)	38, 53, 89
CviKI_1	RGCY	3 cut(s)	38, 53, 89
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	26, 66, 178
FaiI	YATR	5 cut(s)	12, 24, 64, 143, 176
FatI	CATG	3 cut(s)	22, 62, 174
Fnu4HI	GCNGC	2 cut(s)	39, 42
FokI	GGATG	2 cut(s)	116, 158
Fsp4HI	GCNGC	2 cut(s)	39, 42
GluI	GCNGC	2 cut(s)	39, 42
GsaI	CCCAGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	3 cut(s)	26, 66, 178
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	5, 26
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	44, 137, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	26, 66, 178
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	2 cut(s)	48, 63
Lsp1109I	GCAGC	2 cut(s)	25, 28
LweI	GCATC	1 cut(s)	146
MaeII	ACGT	1 cut(s)	158
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	85, 88, 181, 193
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	94, 207
Mph1103I	ATGCAT	1 cut(s)	139
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	26, 66, 178
NsiI	ATGCAT	1 cut(s)	139
NspI	RCATGY	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	40, 43
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PshBI	ATTAAT	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	2 cut(s)	39, 42
Sau3AI	GATC	1 cut(s)	112
ScaI	AGTACT	1 cut(s)	244
SchI	GAGTC	1 cut(s)	35
SetI	ASST	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	161
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	2 cut(s)	38, 41
TspDTI	ATGAA	2 cut(s)	51, 162
TspRI	CASTG	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	120
XceI	RCATGY	1 cut(s)	178
ZrmI	AGTACT	1 cut(s)	244
Zsp2I	ATGCAT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.