AT3G05940

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009384
Physical Location & Seq
Reverse (-)
1777213 .. 1780254
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G05940.1

Sequence Viewer

Length: 1269 bp
ATGGCGGATTTGTTACCCATTTACCTCATTATTTTGGCATTTCTATGCACTGTCGGAGCCATTGCTTTGGCTTTATTCCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTATCAGAGATATATTGTGCGCATTGTCTTCATGGTCCCGGTTTATGCCTTGATGTCATTCTTGGCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTACGAAGCATGGGTGATATATAATTTTCTATCGCTGTGTTTGGCCTGGGTTGGAGGCCCAGGTTCGGTAGTTATAAGTTTAACTGGTCGCTCTCTGAAGCCATCTTGGCATCTCATGACGTGTTGCATCCCACCACTACCATTAGACGGGCGTTTTATTAGACGATGCAAGCAAGGTTGTCTGCAATTTGTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAATACAAGGATGGAAATTTTAGCCCTGATCAATCCTATCTCTATCTTACCATCATCTATACAATATCATACACTGTAGCTCTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGCTTCAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTTGTCTTTCTAACCTATTGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGATGAAGAAGAAGCAGCCCTCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGCTGCTCATTTCTATGCATTTCCGTACAAGGAATATGCAGAGGCCAATGTTGGAGGAGCTCGCAGTTTCTCAGGAAGTCTGGCACATGCTCTTATGCTAAACGATTTCTACCATGATACTGTTCACCAGTTTGCACCAACATATCACGATTATGTGCTCTATAATCATAATGATGGGGGTGAGGAAGGGACAAGGAAGTACCGAGCACGAACATTTGTGCCAACTGGTCAGGAAATGGATGCTGTTAGAAAGAACAAACACATGTTTGGAAACAAGATAGATGGTGTTTCGGTCTCCAGTCAATCTTCAGAAACAAGCACACCCAAAACCTCTGGTGTAACTTATGATCCTGCACGCCCTGAGAGCATGAAATCTTCCTTGCTGGTAGATGCCTCGGACTCTGTTTCCACAATGTATGACATGTCGCTCATTGACATTGATATATCGAGCTACCCTAGCAAGGTACCTTCTGCAAATATAAGTGGAGGACCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

422

Amino Acids

47.34

Weight (kDa)

8.26

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 269 1.5e-92 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 305, 635, 704, 743
Acc16I TGCGCA 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 1234
AccB1I GGYRCC 1 cut(s) 1234
AccII CGCG 1 cut(s) 563
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 1112
AcsI RAATTY 3 cut(s) 490, 623, 736
AcuI CTGAAG 3 cut(s) 347, 584, 1062
AfaI GTAC 4 cut(s) 560, 797, 971, 1236
AfiI CCNNNNNNNGG 3 cut(s) 295, 377, 1231
AflIII ACRYGT 3 cut(s) 350, 1032, 1191
AgsI TTSAA 2 cut(s) 100, 610
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 275, 289
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 5 cut(s) 201, 554, 773, 830, 1221
AluI AGCT 5 cut(s) 201, 554, 773, 830, 1221
Alw21I GWGCWC 4 cut(s) 203, 832, 930, 979
Alw26I GTCTC 1 cut(s) 1069
AlwI GGATC 1 cut(s) 1112
AoxI GGCC 3 cut(s) 273, 286, 813
ApeKI GCWGC 4 cut(s) 722, 767, 770, 773
ApoI RAATTY 3 cut(s) 490, 623, 736
Asp718I GGTACC 1 cut(s) 1234
AspLEI GCGC 2 cut(s) 138, 565
AspS9I GGNCC 4 cut(s) 151, 287, 568, 1259
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 256, 887, 962
AvaII GGWCC 3 cut(s) 151, 568, 1259
BanI GGYRCC 1 cut(s) 1234
BanII GRGCYC 2 cut(s) 203, 832
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 4 cut(s) 203, 832, 930, 979
BbvI GCAGC 4 cut(s) 734, 754, 760, 782
BccI CCATC 5 cut(s) 340, 479, 533, 938, 1046
BciT130I CCWGG 2 cut(s) 277, 291
BclI TGATCA 1 cut(s) 502
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 1069
BfaI CTAG 3 cut(s) 440, 674, 1227
BfmI CTRYAG 2 cut(s) 549, 768
BglI GCCNNNNNGGC 1 cut(s) 337
BglII AGATCT 1 cut(s) 592
BisI GCNGC 4 cut(s) 723, 768, 771, 774
BlsI GCNGC 4 cut(s) 724, 769, 772, 775
Bme1390I CCNGG 3 cut(s) 155, 277, 291
Bme18I GGWCC 3 cut(s) 151, 568, 1259
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 4 cut(s) 151, 287, 568, 1259
BmiI GGNNCC 4 cut(s) 58, 111, 153, 1236
BmrFI CCNGG 3 cut(s) 155, 277, 291
BmsI GCATC 5 cut(s) 349, 366, 386, 1000, 1150
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 1051
BpuMI CCSGG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 1069
BsaJI CCNNGG 3 cut(s) 276, 289, 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 377, 1231
Bse1I ACTGG 5 cut(s) 319, 614, 898, 1000, 1068
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 2 cut(s) 277, 291
BseDI CCNNGG 3 cut(s) 276, 289, 1164
BseGI GGATG 4 cut(s) 357, 490, 715, 1015
BseLI CCNNNNNNNGG 3 cut(s) 295, 377, 1231
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 2 cut(s) 855, 1122
BseNI ACTGG 5 cut(s) 319, 614, 898, 1000, 1068
BseRI GAGGAG 1 cut(s) 840
BseXI GCAGC 4 cut(s) 734, 754, 760, 782
BsgI GTGCAG 1 cut(s) 1107
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 3 cut(s) 275, 288, 815
BshNI GGYRCC 1 cut(s) 1234
BsiHKAI GWGCWC 4 cut(s) 203, 832, 930, 979
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 3 cut(s) 137, 602, 973
BslI CCNNNNNNNGG 3 cut(s) 295, 377, 1231
BsmAI GTCTC 1 cut(s) 1069
BsmFI GGGAC 3 cut(s) 137, 602, 973
BsnI GGCC 3 cut(s) 275, 288, 815
Bso31I GGTCTC 1 cut(s) 1069
Bsp1286I GDGCHC 4 cut(s) 203, 832, 930, 979
Bsp143I GATC 3 cut(s) 502, 592, 1117
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 275, 288, 815
BspCNI CTCAG 2 cut(s) 854, 1123
BspFNI CGCG 1 cut(s) 563
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 4 cut(s) 58, 111, 153, 1236
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 1 cut(s) 1112
BspT107I GGYRCC 1 cut(s) 1234
BspTNI GGTCTC 1 cut(s) 1069
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 5 cut(s) 319, 614, 898, 1000, 1068
BssECI CCNNGG 3 cut(s) 276, 289, 1164
BssMI GATC 3 cut(s) 502, 592, 1117
Bst2UI CCWGG 2 cut(s) 277, 291
Bst4CI ACNGT 3 cut(s) 52, 550, 892
Bst6I CTCTTC 1 cut(s) 734
BstC8I GCNNGC 4 cut(s) 401, 586, 832, 1126
BstDEI CTNAG 2 cut(s) 841, 1131
BstF5I GGATG 4 cut(s) 357, 490, 715, 1015
BstFNI CGCG 1 cut(s) 563
BstHHI GCGC 2 cut(s) 138, 565
BstKTI GATC 3 cut(s) 505, 595, 1120
BstMAI GTCTC 1 cut(s) 1069
BstMBI GATC 3 cut(s) 502, 592, 1117
BstMWI GCNNNNNNNGC 5 cut(s) 337, 560, 773, 1134, 1227
BstNI CCWGG 2 cut(s) 277, 291
BstNSI RCATGY 4 cut(s) 588, 860, 1036, 1195
BstSCI CCNGG 3 cut(s) 153, 275, 289
BstSFI CTRYAG 2 cut(s) 549, 768
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 4 cut(s) 734, 754, 760, 782
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 592
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 592
BsuRI GGCC 3 cut(s) 275, 288, 815
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 4 cut(s) 357, 490, 715, 1015
BtsIMutI CAGTG 2 cut(s) 48, 546
Cac8I GCNNGC 4 cut(s) 401, 586, 832, 1126
CciI TCATGA 1 cut(s) 345
CfoI GCGC 2 cut(s) 138, 565
Cfr13I GGNCC 4 cut(s) 151, 287, 568, 1259
Csp6I GTAC 4 cut(s) 559, 796, 970, 1235
CviAII CATG 9 cut(s) 148, 240, 346, 585, 857, 884, 1033, 1138, 1192
CviQI GTAC 4 cut(s) 559, 796, 970, 1235
DdeI CTNAG 2 cut(s) 841, 1131
DpnI GATC 3 cut(s) 504, 594, 1119
DpnII GATC 3 cut(s) 502, 592, 1117
Eam1104I CTCTTC 1 cut(s) 734
EarI CTCTTC 1 cut(s) 734
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 201, 830
Eco24I GRGCYC 2 cut(s) 203, 832
Eco31I GGTCTC 1 cut(s) 1069
Eco47I GGWCC 3 cut(s) 151, 568, 1259
Eco53kI GAGCTC 2 cut(s) 201, 830
Eco57I CTGAAG 3 cut(s) 347, 584, 1062
EcoICRI GAGCTC 2 cut(s) 201, 830
EcoO109I RGGNCCY 1 cut(s) 1259
EcoRII CCWGG 2 cut(s) 275, 289
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 203, 832
FaeI CATG 9 cut(s) 151, 243, 349, 588, 860, 887, 1036, 1141, 1195
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 3 cut(s) 137, 602, 973
FatI CATG 9 cut(s) 147, 239, 345, 584, 856, 883, 1032, 1137, 1191
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 4 cut(s) 723, 768, 771, 774
FokI GGATG 4 cut(s) 344, 497, 722, 1022
FriOI GRGCYC 2 cut(s) 203, 832
Fsp4HI GCNGC 4 cut(s) 723, 768, 771, 774
FspAI RTGCGCAY 1 cut(s) 137
FspBI CTAG 3 cut(s) 440, 674, 1227
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 137, 564
GluI GCNGC 4 cut(s) 723, 768, 771, 774
GsuI CTGGAG 1 cut(s) 1051
HaeIII GGCC 3 cut(s) 275, 288, 815
HapII CCGG 1 cut(s) 155
HhaI GCGC 2 cut(s) 138, 565
Hin1II CATG 9 cut(s) 151, 243, 349, 588, 860, 887, 1036, 1141, 1195
Hin6I GCGC 2 cut(s) 136, 563
HinP1I GCGC 2 cut(s) 136, 563
HinfI GANTC 1 cut(s) 1169
HpaII CCGG 1 cut(s) 155
HphI GGTGA 3 cut(s) 256, 887, 962
Hpy166II GTNNAC 2 cut(s) 232, 895
Hpy188I TCNGA 5 cut(s) 56, 123, 327, 1081, 1168
Hpy188III TCNNGA 5 cut(s) 346, 696, 843, 917, 1001
Hpy8I GTNNAC 2 cut(s) 232, 895
HpyAV CCTTC 2 cut(s) 950, 1248
HpyCH4III ACNGT 3 cut(s) 52, 550, 892
HpyCH4IV ACGT 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 5 cut(s) 337, 560, 773, 1134, 1227
HpyF3I CTNAG 2 cut(s) 841, 1131
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 9 cut(s) 151, 243, 349, 588, 860, 887, 1036, 1141, 1195
HspAI GCGC 2 cut(s) 136, 563
KpnI GGTACC 1 cut(s) 1238
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 502, 592, 1117
LmnI GCTCC 2 cut(s) 56, 827
Lsp1109I GCAGC 4 cut(s) 734, 754, 760, 782
LweI GCATC 5 cut(s) 349, 366, 386, 1000, 1150
MaeI CTAG 3 cut(s) 440, 674, 1227
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 12, 448, 1108
MalI GATC 3 cut(s) 504, 594, 1119
MboI GATC 3 cut(s) 502, 592, 1117
MboII GAAGA 6 cut(s) 136, 721, 725, 728, 1068, 1137
MflI RGATCY 1 cut(s) 592
MhlI GDGCHC 4 cut(s) 203, 832, 930, 979
MluCI AATT 5 cut(s) 253, 416, 490, 623, 736
MlyI GAGTC 1 cut(s) 1163
MmeI TCCRAC 3 cut(s) 34, 262, 802
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 2 cut(s) 213, 311
MslI CAYNNNNRTG 5 cut(s) 43, 455, 783, 921, 942
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 3 cut(s) 155, 277, 291
MvaI CCWGG 2 cut(s) 277, 291
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 5 cut(s) 337, 560, 773, 1134, 1227
NciI CCSGG 1 cut(s) 155
NdeII GATC 3 cut(s) 502, 592, 1117
NlaIII CATG 9 cut(s) 151, 243, 349, 588, 860, 887, 1036, 1141, 1195
NlaIV GGNNCC 4 cut(s) 58, 111, 153, 1236
NmuCI GTSAC 1 cut(s) 448
NsbI TGCGCA 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 4 cut(s) 588, 860, 1036, 1195
OliI CACNNNNGTG 1 cut(s) 455
PaeI GCATGC 1 cut(s) 588
PagI TCATGA 1 cut(s) 345
PciI ACATGT 2 cut(s) 1032, 1191
PkrI GCNGC 4 cut(s) 724, 769, 772, 775
PleI GAGTC 1 cut(s) 1163
PpsI GAGTC 1 cut(s) 1163
PpuMI RGGWCCY 1 cut(s) 1259
PscI ACATGT 2 cut(s) 1032, 1191
PsiI TTATAA 4 cut(s) 305, 635, 704, 743
Psp124BI GAGCTC 2 cut(s) 203, 832
Psp5II RGGWCCY 1 cut(s) 1259
Psp6I CCWGG 2 cut(s) 275, 289
PspGI CCWGG 2 cut(s) 275, 289
PspN4I GGNNCC 4 cut(s) 58, 111, 153, 1236
PspPI GGNCC 4 cut(s) 151, 287, 568, 1259
PspPPI RGGWCCY 1 cut(s) 1259
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 592
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 4 cut(s) 560, 797, 971, 1236
RsaNI GTAC 4 cut(s) 559, 796, 970, 1235
RseI CAYNNNNRTG 5 cut(s) 43, 455, 783, 921, 942
SacI GAGCTC 2 cut(s) 203, 832
SaqAI TTAA 2 cut(s) 213, 311
SatI GCNGC 4 cut(s) 723, 768, 771, 774
Sau3AI GATC 3 cut(s) 502, 592, 1117
Sau96I GGNCC 4 cut(s) 151, 287, 568, 1259
SchI GAGTC 1 cut(s) 1163
ScrFI CCNGG 3 cut(s) 155, 277, 291
SduI GDGCHC 4 cut(s) 203, 832, 930, 979
SfaNI GCATC 5 cut(s) 349, 366, 386, 1000, 1150
SfcI CTRYAG 2 cut(s) 549, 768
SinI GGWCC 3 cut(s) 151, 568, 1259
SmiMI CAYNNNNRTG 5 cut(s) 43, 455, 783, 921, 942
SphI GCATGC 1 cut(s) 588
Sse9I AATT 5 cut(s) 253, 416, 490, 623, 736
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 440, 674, 1227
SstI GAGCTC 2 cut(s) 203, 832
StyD4I CCNGG 3 cut(s) 153, 275, 289
TaaI ACNGT 3 cut(s) 52, 550, 892
TaiI ACGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 1217
TaqII GACCGA 1 cut(s) 1051
TasI AATT 5 cut(s) 253, 416, 490, 623, 736
Tru1I TTAA 2 cut(s) 213, 311
Tru9I TTAA 2 cut(s) 213, 311
TscAI CASTG 2 cut(s) 55, 553
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 722, 767, 770, 773
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 136, 726, 1154
TspGWI ACGGA 3 cut(s) 122, 212, 783
TspRI CASTG 2 cut(s) 55, 553
VpaK11BI GGWCC 3 cut(s) 151, 568, 1259
XapI RAATTY 3 cut(s) 490, 623, 736
XceI RCATGY 4 cut(s) 588, 860, 1036, 1195
XspI CTAG 3 cut(s) 440, 674, 1227
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.