Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033812.1

Orthogroup ID

OG0009384

Physical Location & Seq

Genomic Coordinates Reverse (-)

16970 .. 18519

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033812.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggctctttacgcgttggcattgttctatgtggcttgcagagatctgcttcagcctttcaaccctgttccaaagttcatcataatcaagtctgtcgttttccttacttattggcagggtgtgttggttttccttgctgcaaaaactggattgataaagaatgcagaagatgctgctcaatatcaaaatttcataatatgtgtggagatgctacttgctgctgtcggtcatctatatgcatttccttacaaggagtatgctggtgcaaatattggtgcctctcgagatctgaccggaagcctctctcatgccttaaaattgaatgacttttaccatgatactgtccaccagtttgccccgacttaccatgattatgtactctacaactctactgagggtgatgagggaaagaggaagtatcggtcacgtacctttgtgccgactggtccagagatggatgctgtcagaaggaacaagaacatctttggcaacaagatagaggacatacaactttccagtctatcatcttctagtgcaagcactccggaaaaatctggcccccagcctgtacctgattctgcaaattcagatgcaatgaagtcttccctgctcgttgatacctcaaattcctcatcagtgccatatgacatgtcacttattgacttggacttgtccagttaccccacaaaggtccctccagcaaacgaacatggcactaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

6.06

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05940 AT5G26740 AT5G26740 AT5G26740
fragaria_vesca	FvH4_6g08800 FvH4_6g08800
malus_domestica	MD04G1183500.v1.1 MD12G1196900.v1.1
prunus_persica	Prupe.6G302000_v2.0.a1
pyrus_communis	pycom04g16200 pycom12g18320
rosa_chinensis	RchiOBHm_Chr3g0459061
rosa_laevigata	RLG00000025122
rosa_multiflora	Rmu_sc0004343.1_g000013 Rmu_sc0033812.1_g000006
rosa_roxburghii	Rroxscaffold_6G00420540
rosa_rugosa	Rorug03G0033300
rosa_samantha	Rh3AG091200 Rh3BG094200 Rh3CG094700 Rh3DG094700
rosa_wichuraiana	Rw3G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	544
AcsI	RAATTY	3 cut(s)	187, 583, 625
AcuI	CTGAAG	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	720
AfaI	GTAC	3 cut(s)	378, 430, 570
AfiI	CCNNNNNNNGG	1 cut(s)	688
AflIII	ACRYGT	2 cut(s)	12, 648
AgsI	TTSAA	2 cut(s)	61, 322
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	3 cut(s)	137, 173, 218
ApoI	RAATTY	3 cut(s)	187, 583, 625
AspS9I	GGNCC	3 cut(s)	446, 557, 691
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	2 cut(s)	446, 691
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	124, 160, 205
BccI	CCATC	1 cut(s)	448
BfaI	CTAG	2 cut(s)	531, 717
BglII	AGATCT	2 cut(s)	43, 286
BisI	GCNGC	3 cut(s)	138, 174, 219
BlsI	GCNGC	3 cut(s)	139, 175, 220
Bme18I	GGWCC	2 cut(s)	446, 691
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	446, 557, 691
BmiI	GGNNCC	3 cut(s)	277, 559, 693
BmsI	GCATC	4 cut(s)	160, 198, 448, 580
BpiI	GAAGAC	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	428
BsaWI	WCCGGW	2 cut(s)	293, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	5 cut(s)	151, 349, 448, 516, 675
Bse3DI	GCAATG	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	544
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	5 cut(s)	151, 349, 448, 516, 675
BseXI	GCAGC	3 cut(s)	124, 160, 205
BseYI	CCCAGC	1 cut(s)	561
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	294, 545
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	43, 286
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	3 cut(s)	277, 559, 693
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	5 cut(s)	151, 349, 448, 516, 675
BssMI	GATC	2 cut(s)	43, 286
Bst4CI	ACNGT	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	37, 538
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	46, 289
BstMBI	GATC	2 cut(s)	43, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 170
BstNSI	RCATGY	1 cut(s)	652
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	124, 160, 205
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	43, 286
BstYI	RGATCY	2 cut(s)	43, 286
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	2 cut(s)	37, 538
Cfr13I	GGNCC	3 cut(s)	446, 557, 691
Csp6I	GTAC	3 cut(s)	377, 429, 569
CviAII	CATG	5 cut(s)	308, 335, 368, 649, 710
CviJI	RGCY	6 cut(s)	5, 35, 55, 300, 558, 565
CviKI_1	RGCY	6 cut(s)	5, 35, 55, 300, 558, 565
CviQI	GTAC	3 cut(s)	377, 429, 569
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	45, 288
DpnII	GATC	2 cut(s)	43, 286
DraIII	CACNNNGTG	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	446, 691
Eco57I	CTGAAG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	5 cut(s)	311, 338, 371, 652, 713
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	5 cut(s)	307, 334, 367, 648, 709
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	3 cut(s)	138, 174, 219
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	138, 174, 219
FspBI	CTAG	2 cut(s)	531, 717
GluI	GCNGC	3 cut(s)	138, 174, 219
GsaI	CCCAGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	294, 545
Hin1II	CATG	5 cut(s)	311, 338, 371, 652, 713
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	2 cut(s)	294, 545
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	291, 467, 589
Hpy188III	TCNNGA	4 cut(s)	282, 284, 449, 545
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	462
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	8 cut(s)	39, 140, 164, 239, 266, 536, 581, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 170
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	5 cut(s)	311, 338, 371, 652, 713
Kpn2I	TCCGGA	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	43, 286
Lsp1109I	GCAGC	3 cut(s)	124, 160, 205
LweI	GCATC	4 cut(s)	160, 198, 448, 580
MaeI	CTAG	2 cut(s)	531, 717
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	3 cut(s)	423, 651, 677
MalI	GATC	2 cut(s)	45, 288
MboI	GATC	2 cut(s)	43, 286
MboII	GAAGA	3 cut(s)	179, 519, 594
MflI	RGATCY	2 cut(s)	43, 286
MluCI	AATT	4 cut(s)	187, 317, 583, 625
MluI	ACGCGT	1 cut(s)	12
MnlI	CCTC	9 cut(s)	289, 311, 388, 397, 405, 493, 631, 640, 705
Mph1103I	ATGCAT	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	544
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	2 cut(s)	234, 372
MspI	CCGG	2 cut(s)	294, 545
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	11, 170
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	2 cut(s)	43, 286
NlaIII	CATG	5 cut(s)	311, 338, 371, 652, 713
NlaIV	GGNNCC	3 cut(s)	277, 559, 693
NmuCI	GTSAC	2 cut(s)	423, 651
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	282
PciI	ACATGT	1 cut(s)	648
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	139, 175, 220
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	691
PscI	ACATGT	1 cut(s)	648
Psp5II	RGGWCCY	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	277, 559, 693
PspPI	GGNCC	3 cut(s)	446, 557, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsuI	RGATCY	2 cut(s)	43, 286
RsaI	GTAC	3 cut(s)	378, 430, 570
RsaNI	GTAC	3 cut(s)	377, 429, 569
RseI	CAYNNNNRTG	2 cut(s)	234, 372
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	138, 174, 219
Sau3AI	GATC	2 cut(s)	43, 286
Sau96I	GGNCC	3 cut(s)	446, 557, 691
SetI	ASST	6 cut(s)	430, 434, 574, 623, 693, 722
SfaNI	GCATC	4 cut(s)	160, 198, 448, 580
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	446, 691
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	234, 372
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	187, 317, 583, 625
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	531, 717
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	283
TaqII	GACCGA	2 cut(s)	215, 411
TasI	AATT	4 cut(s)	187, 317, 583, 625
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	642
TseFI	GTSAC	2 cut(s)	423, 651
TseI	GCWGC	3 cut(s)	137, 173, 218
Tsp45I	GTSAC	2 cut(s)	423, 651
TspDTI	ATGAA	3 cut(s)	67, 181, 611
TspRI	CASTG	1 cut(s)	642
VpaK11BI	GGWCC	2 cut(s)	446, 691
XapI	RAATTY	3 cut(s)	187, 583, 625
XceI	RCATGY	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	282
XspI	CTAG	2 cut(s)	531, 717
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.