Rw3G007820

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009384
Physical Location & Seq
Reverse (-)
7270909 .. 7275406
4498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007820.1

Sequence Viewer

Length: 1278 bp
ATGGCGGAATCGGAATCGGTCCCAATCTACCTGAGCATTGTTGCCTTTGTTTGCACTGTTGGAGCTATTGCTCTGGCAGTTATGCACATCTACAGGCACCTCATGAATTACACCGAACCGACTTATCAGAGATACATTGTTCGCATCATTTTTATGGTCCCGGTATATGCATTAATGTCGTTCTTATCCCTTGTTATACCTGCGGGCTCCATCTACTTTAGTTCCATCAGGGAAGTCTATGAAGCTTGGGTCATTTACAATTTTCTATCGCTGTGCTTGGCATGGGTTGGTGGCCCAGGGTCTGTTGTCGTAAGTTTAACTGGTAGGGTTATAAAGCCTTCGTGGGCTCTGATGACATGCTGCTTCCCTCCCATACCCCTGGACGGGCGTTTTATCCGTAGGTGCAAGCAAGGTTGTTTGCAGTTTGTGTTTCTGAAGCCTGCATTAGCTGCTGTTACTCTCGTACTTTACGCAAAAGGGAAATATGCAGATGGAAATTTCAGTCCAAACCAGTCATACCTGTATCTCACTATTATCTATACAGTTTCATACTCGATGGCTCTTTACGCGTTGGCATTGTTCTATGTGGCTTGTAGAGATCTGCTTCAGCCTTTCAACCCTGTTCCAAAGTTCATCATAATCAAGTCTGTCGTTTTCCTTACTTATTGGCAGGGTGTGTTGGTTTTCCTTGCTGCAAAAACTGGATTGATAAAGAATGCAGAAGATGCTGCTCAATATCAAAATTTCATAATATGTGTGGAGATGCTACTTGCTGCTGTCGGTCATCTATATGCATTTCCTTACAAGGAGTATGCTGGTGCAAATATTGGTGCCTCTCGAGATTTGACCGGAAGCCTCTCTCATGCCTTAAAATTGAATGACTTTTACCATGATACTGTCCACCAGTTTGCCCCGACTTACCATGATTATGTACTCTACAACTCTACTGAGGGTGATGAGGGAAAGAGGAAGTATCGGTCACGTACCTTTGTGCCGACTGGTCCAGAGATGGATGCCGTCAGAAGGAACAAGAACATCTTTGGCAACAAGATAGATGACATACAACTTTCCAGTCTATCATCTTCTAGTGCAAGCACTCCGGAAAAATCTGGCCCCCAGCCTGTACCTGATTCTGCAAATTCAGATGCAATGAAGTCTTCCCTGCTCGTTGATACCTCAAATTCCTCATCAGTGCCATATGACATGTCACTTATTGACTTGGACTTGTCCAGTTACCCCACAAAGGTCCCTCCAGCAAACGAACATGGCACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

425

Amino Acids

47.23

Weight (kDa)

8.26

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 12 - 271 1e-91 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 2 cut(s) 96, 830
AccII CGCG 1 cut(s) 569
AccIII TCCGGA 1 cut(s) 1099
AciI CCGC 2 cut(s) 5, 203
AcsI RAATTY 4 cut(s) 496, 742, 1138, 1180
AcuI CTGAAG 2 cut(s) 455, 590
AdeI CACNNNGTG 1 cut(s) 1275
AfaI GTAC 4 cut(s) 465, 933, 985, 1125
AfiI CCNNNNNNNGG 4 cut(s) 383, 384, 1023, 1243
AflIII ACRYGT 2 cut(s) 567, 1203
AgsI TTSAA 2 cut(s) 616, 877
AjnI CCWGG 2 cut(s) 295, 378
AluBI AGCT 3 cut(s) 65, 245, 449
AluI AGCT 3 cut(s) 65, 245, 449
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 837
Aor13HI TCCGGA 1 cut(s) 1099
AoxI GGCC 2 cut(s) 292, 1111
ApeKI GCWGC 5 cut(s) 360, 449, 692, 728, 773
ApoI RAATTY 4 cut(s) 496, 742, 1138, 1180
AseI ATTAAT 1 cut(s) 173
AspS9I GGNCC 6 cut(s) 19, 157, 293, 1001, 1112, 1246
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 4 cut(s) 19, 157, 1001, 1246
BanI GGYRCC 2 cut(s) 96, 830
BanII GRGCYC 2 cut(s) 209, 349
BbsI GAAGAC 1 cut(s) 1149
BbvI GCAGC 5 cut(s) 347, 436, 679, 715, 760
BccI CCATC 5 cut(s) 218, 233, 485, 550, 1003
BceAI ACGGC 1 cut(s) 1001
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 2 cut(s) 297, 380
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 2 cut(s) 1086, 1272
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 208
BglII AGATCT 1 cut(s) 598
BisI GCNGC 5 cut(s) 361, 450, 693, 729, 774
BlsI GCNGC 5 cut(s) 362, 451, 694, 730, 775
Bme1390I CCNGG 3 cut(s) 161, 297, 380
Bme18I GGWCC 4 cut(s) 19, 157, 1001, 1246
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 6 cut(s) 19, 157, 293, 1001, 1112, 1246
BmiI GGNNCC 7 cut(s) 21, 98, 159, 208, 832, 1114, 1248
BmrFI CCNGG 3 cut(s) 161, 297, 380
BmsI GCATC 5 cut(s) 153, 715, 753, 1003, 1135
BpiI GAAGAC 1 cut(s) 1149
BpmI CTGGAG 1 cut(s) 1236
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 983
BsaJI CCNNGG 3 cut(s) 295, 296, 378
BsaWI WCCGGW 2 cut(s) 848, 1099
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 384, 1023, 1243
Bse1I ACTGG 7 cut(s) 325, 511, 706, 904, 1003, 1071, 1230
Bse3DI GCAATG 1 cut(s) 1155
BseAI TCCGGA 1 cut(s) 1099
BseBI CCWGG 2 cut(s) 297, 380
BseDI CCNNGG 3 cut(s) 295, 296, 378
BseGI GGATG 1 cut(s) 1018
BseLI CCNNNNNNNGG 4 cut(s) 383, 384, 1023, 1243
BseMI GCAATG 1 cut(s) 1155
BseMII CTCAG 2 cut(s) 23, 939
BseNI ACTGG 7 cut(s) 325, 511, 706, 904, 1003, 1071, 1230
BseXI GCAGC 5 cut(s) 347, 436, 679, 715, 760
BseYI CCCAGC 1 cut(s) 1116
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 294, 1113
BshNI GGYRCC 2 cut(s) 96, 830
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 3 cut(s) 161, 849, 1100
BslFI GGGAC 3 cut(s) 5, 143, 1232
BslI CCNNNNNNNGG 4 cut(s) 383, 384, 1023, 1243
BsmFI GGGAC 3 cut(s) 5, 143, 1232
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 2 cut(s) 294, 1113
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 209, 349
Bsp13I TCCGGA 1 cut(s) 1099
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 2 cut(s) 5, 203
BspANI GGCC 2 cut(s) 294, 1113
BspCNI CTCAG 2 cut(s) 24, 940
BspEI TCCGGA 1 cut(s) 1099
BspFNI CGCG 1 cut(s) 569
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 7 cut(s) 21, 98, 159, 208, 832, 1114, 1248
BspMI ACCTGC 1 cut(s) 208
BspT107I GGYRCC 2 cut(s) 96, 830
BsrDI GCAATG 1 cut(s) 1155
BsrI ACTGG 7 cut(s) 325, 511, 706, 904, 1003, 1071, 1230
BssECI CCNNGG 3 cut(s) 295, 296, 378
BssMI GATC 1 cut(s) 598
Bst2UI CCWGG 2 cut(s) 297, 380
Bst4CI ACNGT 3 cut(s) 58, 544, 898
BstAPI GCANNNNNTGC 2 cut(s) 449, 725
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 4 cut(s) 205, 407, 441, 1093
BstDEI CTNAG 2 cut(s) 32, 948
BstF5I GGATG 1 cut(s) 1018
BstFNI CGCG 1 cut(s) 569
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 3 cut(s) 449, 566, 725
BstNI CCWGG 2 cut(s) 297, 380
BstNSI RCATGY 2 cut(s) 360, 1207
BstSCI CCNGG 3 cut(s) 159, 295, 378
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 5 cut(s) 347, 436, 679, 715, 760
BstV2I GAAGAC 1 cut(s) 1149
BstX2I RGATCY 1 cut(s) 598
BstXI CCANNNNNNTGG 1 cut(s) 379
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 2 cut(s) 294, 1113
BtsCI GGATG 1 cut(s) 1018
BtsIMutI CAGTG 2 cut(s) 54, 1197
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 205, 407, 441, 1093
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 102
Cfr13I GGNCC 6 cut(s) 19, 157, 293, 1001, 1112, 1246
Csp6I GTAC 4 cut(s) 464, 932, 984, 1124
CviAII CATG 8 cut(s) 103, 282, 357, 863, 890, 923, 1204, 1265
CviQI GTAC 4 cut(s) 464, 932, 984, 1124
DdeI CTNAG 2 cut(s) 32, 948
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
DraIII CACNNNGTG 1 cut(s) 1275
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 2 cut(s) 209, 349
Eco47I GGWCC 4 cut(s) 19, 157, 1001, 1246
Eco57I CTGAAG 2 cut(s) 455, 590
Eco88I CYCGRG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 1246
EcoRII CCWGG 2 cut(s) 295, 378
EcoT22I ATGCAT 2 cut(s) 172, 796
EcoT38I GRGCYC 2 cut(s) 209, 349
FaeI CATG 8 cut(s) 106, 285, 360, 866, 893, 926, 1207, 1268
FalI AAGNNNNNCTT 2 cut(s) 1022, 1054
FaqI GGGAC 3 cut(s) 5, 143, 1232
FatI CATG 8 cut(s) 102, 281, 356, 862, 889, 922, 1203, 1264
FauI CCCGC 1 cut(s) 196
FauNDI CATATG 1 cut(s) 1198
Fnu4HI GCNGC 5 cut(s) 361, 450, 693, 729, 774
FokI GGATG 1 cut(s) 1025
FriOI GRGCYC 2 cut(s) 209, 349
Fsp4HI GCNGC 5 cut(s) 361, 450, 693, 729, 774
FspBI CTAG 2 cut(s) 1086, 1272
GluI GCNGC 5 cut(s) 361, 450, 693, 729, 774
GsaI CCCAGC 1 cut(s) 1120
GsuI CTGGAG 1 cut(s) 1236
HaeIII GGCC 2 cut(s) 294, 1113
HapII CCGG 3 cut(s) 161, 849, 1100
Hin1II CATG 8 cut(s) 106, 285, 360, 866, 893, 926, 1207, 1268
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 3 cut(s) 8, 14, 1130
HpaII CCGG 3 cut(s) 161, 849, 1100
HphI GGTGA 1 cut(s) 965
Hpy166II GTNNAC 1 cut(s) 901
Hpy188I TCNGA 6 cut(s) 13, 129, 351, 435, 1022, 1144
Hpy188III TCNNGA 5 cut(s) 103, 837, 839, 1004, 1100
Hpy8I GTNNAC 1 cut(s) 901
HpyAV CCTTC 2 cut(s) 348, 1017
HpyCH4III ACNGT 3 cut(s) 58, 544, 898
HpyCH4IV ACGT 1 cut(s) 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 566, 725
HpyF3I CTNAG 2 cut(s) 32, 948
HpySE526I ACGT 1 cut(s) 982
Hsp92II CATG 8 cut(s) 106, 285, 360, 866, 893, 926, 1207, 1268
Kpn2I TCCGGA 1 cut(s) 1099
Kzo9I GATC 1 cut(s) 598
LmnI GCTCC 2 cut(s) 62, 212
Lsp1109I GCAGC 5 cut(s) 347, 436, 679, 715, 760
LweI GCATC 5 cut(s) 153, 715, 753, 1003, 1135
MaeI CTAG 2 cut(s) 1086, 1272
MaeII ACGT 1 cut(s) 982
MaeIII GTNAC 4 cut(s) 454, 978, 1206, 1232
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 3 cut(s) 734, 1074, 1149
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 209, 349
MluCI AATT 7 cut(s) 106, 259, 496, 742, 872, 1138, 1180
MluI ACGCGT 1 cut(s) 567
MmeI TCCRAC 1 cut(s) 40
Mph1103I ATGCAT 2 cut(s) 172, 796
MroI TCCGGA 1 cut(s) 1099
MseI TTAA 3 cut(s) 173, 317, 869
MslI CAYNNNNRTG 3 cut(s) 152, 789, 927
MspI CCGG 3 cut(s) 161, 849, 1100
MspR9I CCNGG 3 cut(s) 161, 297, 380
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 2 cut(s) 297, 380
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 449, 566, 725
NciI CCSGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 1198
NdeII GATC 1 cut(s) 598
NlaIII CATG 8 cut(s) 106, 285, 360, 866, 893, 926, 1207, 1268
NlaIV GGNNCC 7 cut(s) 21, 98, 159, 208, 832, 1114, 1248
NmuCI GTSAC 2 cut(s) 978, 1206
NsiI ATGCAT 2 cut(s) 172, 796
NspI RCATGY 2 cut(s) 360, 1207
PaeR7I CTCGAG 1 cut(s) 837
PagI TCATGA 1 cut(s) 102
PasI CCCWGGG 1 cut(s) 296
PciI ACATGT 1 cut(s) 1203
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 3 cut(s) 8, 14, 1130
PkrI GCNGC 5 cut(s) 362, 451, 694, 730, 775
Ppu21I YACGTR 1 cut(s) 983
PpuMI RGGWCCY 1 cut(s) 1246
PscI ACATGT 1 cut(s) 1203
PshBI ATTAAT 1 cut(s) 173
PsiI TTATAA 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 1246
Psp6I CCWGG 2 cut(s) 295, 378
PspFI CCCAGC 1 cut(s) 1116
PspGI CCWGG 2 cut(s) 295, 378
PspN4I GGNNCC 7 cut(s) 21, 98, 159, 208, 832, 1114, 1248
PspPI GGNCC 6 cut(s) 19, 157, 293, 1001, 1112, 1246
PspPPI RGGWCCY 1 cut(s) 1246
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 4 cut(s) 465, 933, 985, 1125
RsaNI GTAC 4 cut(s) 464, 932, 984, 1124
RseI CAYNNNNRTG 3 cut(s) 152, 789, 927
SaqAI TTAA 3 cut(s) 173, 317, 869
SatI GCNGC 5 cut(s) 361, 450, 693, 729, 774
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 6 cut(s) 19, 157, 293, 1001, 1112, 1246
ScrFI CCNGG 3 cut(s) 161, 297, 380
SduI GDGCHC 2 cut(s) 209, 349
SfaNI GCATC 5 cut(s) 153, 715, 753, 1003, 1135
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 4 cut(s) 19, 157, 1001, 1246
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 3 cut(s) 152, 789, 927
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
Sse9I AATT 7 cut(s) 106, 259, 496, 742, 872, 1138, 1180
SsiI CCGC 2 cut(s) 5, 203
SspI AATATT 1 cut(s) 826
SspMI CTAG 2 cut(s) 1086, 1272
StyD4I CCNGG 3 cut(s) 159, 295, 378
TaaI ACNGT 3 cut(s) 58, 544, 898
TaiI ACGT 1 cut(s) 985
TaqI TCGA 2 cut(s) 554, 838
TaqII GACCGA 3 cut(s) 7, 770, 966
TasI AATT 7 cut(s) 106, 259, 496, 742, 872, 1138, 1180
TatI WGTACW 1 cut(s) 931
TfiI GAWTC 3 cut(s) 8, 14, 1130
Tru1I TTAA 3 cut(s) 173, 317, 869
Tru9I TTAA 3 cut(s) 173, 317, 869
TscAI CASTG 2 cut(s) 61, 1197
TseFI GTSAC 2 cut(s) 978, 1206
TseI GCWGC 5 cut(s) 360, 449, 692, 728, 773
Tsp45I GTSAC 2 cut(s) 978, 1206
TspDTI ATGAA 6 cut(s) 119, 255, 537, 622, 736, 1166
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 61, 1197
VpaK11BI GGWCC 4 cut(s) 19, 157, 1001, 1246
VspI ATTAAT 1 cut(s) 173
XapI RAATTY 4 cut(s) 496, 742, 1138, 1180
XceI RCATGY 2 cut(s) 360, 1207
XhoI CTCGAG 1 cut(s) 837
XspI CTAG 2 cut(s) 1086, 1272
Zsp2I ATGCAT 2 cut(s) 172, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.