Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004343.1

Orthogroup ID

OG0009384

Physical Location & Seq

Genomic Coordinates Forward (+)

43426 .. 47941

Gene Structure 4516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004343.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atggcggaatcggaatcggtcccaatctacctgagcattgttgcctttgtttgcactgttggagctattgctctggcagttatgcacatctacaggcacctcatgaattacaccgagccgacttatcagagatacattgtccgcatcatttttatggtcccggtatacgcattaatgtcgttcttatcccttgttatacctgcgggctccatctactttagttccatcagggaagtctatgaagcttgggtcatttacaattttctatcactgtgcttggcatgggttggtggcccagggtctgttgtcgtaagtttaactggtagggttataaagccttcgtgggctctgatgacatgctgcttccctcccatacccctggacgggcgttttatccgtaggtgcaagcaaggttgtttgcagtttgtgtttctgaagcctgcattagctgctgttactctcatactttacgcaaaagggaaatatgcagatggaaatttcagtccaaaccagtcatacctgtatctcactattatctatacagtttcatactcgatggctctttacgcgttggcattgttctatgtggcttgcagagatctgcttcagcctttcaaccctgttccaaagttcatcataatcaagtctgtcgttttccttacttattggcagggtgtgttggttttccttgctgcaaaaactggattgataaagaatgcagaagatgctgctcaatatcaaaatttcataatatgtgtggagatgctacttgctgctgtcggtcatctatatgcatttccttacaaggagtatgctggtgcaaatattggtgcctctcgagatctgaccggaagcctctctcatgccttaaaattgaatgacttttaccatgatactgtccaccagtttgccccgacttaccatgattatgtactctacaactctactgagggtgatgagggaaagaggaagtatcggtcacgtacctttgtgccgactggtccagagatggatgctgtcagaaggaacaagaacatctttggcaacaagatagatgacatacaactttccagtctatcatcttctagtgcaagcactccggaaaaatctggcccccagcctgtacctgattctgcaaattcagatgcaatgaagtcttccctgctcgttgatacctcaaattcctcatcagtgccatatgacatgtcacttattgacttggacttgtccagttaccccacaaaggtccctccagcaaacgaacatggcactaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

425

Amino Acids

47.25

Weight (kDa)

8.26

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05940 AT5G26740 AT5G26740 AT5G26740
fragaria_vesca	FvH4_6g08800 FvH4_6g08800
malus_domestica	MD04G1183500.v1.1 MD12G1196900.v1.1
prunus_persica	Prupe.6G302000_v2.0.a1
pyrus_communis	pycom04g16200 pycom12g18320
rosa_chinensis	RchiOBHm_Chr3g0459061
rosa_laevigata	RLG00000025122
rosa_multiflora	Rmu_sc0004343.1_g000013 Rmu_sc0033812.1_g000006
rosa_roxburghii	Rroxscaffold_6G00420540
rosa_rugosa	Rorug03G0033300
rosa_samantha	Rh3AG091200 Rh3BG094200 Rh3CG094700 Rh3DG094700
rosa_wichuraiana	Rw3G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	96, 830
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	569
AccIII	TCCGGA	1 cut(s)	1099
AciI	CCGC	3 cut(s)	5, 142, 203
AcsI	RAATTY	4 cut(s)	496, 742, 1138, 1180
AcuI	CTGAAG	2 cut(s)	455, 590
AdeI	CACNNNGTG	1 cut(s)	1275
AfaI	GTAC	3 cut(s)	933, 985, 1125
AfiI	CCNNNNNNNGG	3 cut(s)	383, 384, 1243
AflIII	ACRYGT	2 cut(s)	567, 1203
AgsI	TTSAA	2 cut(s)	616, 877
AjnI	CCWGG	2 cut(s)	295, 378
AluBI	AGCT	3 cut(s)	65, 245, 449
AluI	AGCT	3 cut(s)	65, 245, 449
AlwNI	CAGNNNCTG	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	837
Aor13HI	TCCGGA	1 cut(s)	1099
AoxI	GGCC	2 cut(s)	292, 1111
ApeKI	GCWGC	5 cut(s)	360, 449, 692, 728, 773
ApoI	RAATTY	4 cut(s)	496, 742, 1138, 1180
AseI	ATTAAT	1 cut(s)	173
AspS9I	GGNCC	6 cut(s)	19, 157, 293, 1001, 1112, 1246
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	965
AvaI	CYCGRG	1 cut(s)	837
AvaII	GGWCC	4 cut(s)	19, 157, 1001, 1246
BanI	GGYRCC	2 cut(s)	96, 830
BanII	GRGCYC	2 cut(s)	209, 349
BbsI	GAAGAC	1 cut(s)	1149
BbvI	GCAGC	5 cut(s)	347, 436, 679, 715, 760
BccI	CCATC	5 cut(s)	218, 233, 485, 550, 1003
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	2 cut(s)	297, 380
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	2 cut(s)	1086, 1272
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	2 cut(s)	598, 841
BisI	GCNGC	5 cut(s)	361, 450, 693, 729, 774
BlsI	GCNGC	5 cut(s)	362, 451, 694, 730, 775
Bme1390I	CCNGG	3 cut(s)	161, 297, 380
Bme18I	GGWCC	4 cut(s)	19, 157, 1001, 1246
BmeT110I	CYCGRG	1 cut(s)	837
BmgT120I	GGNCC	6 cut(s)	19, 157, 293, 1001, 1112, 1246
BmiI	GGNNCC	7 cut(s)	21, 98, 159, 208, 832, 1114, 1248
BmrFI	CCNGG	3 cut(s)	161, 297, 380
BmsI	GCATC	5 cut(s)	153, 715, 753, 1003, 1135
BpiI	GAAGAC	1 cut(s)	1149
BpmI	CTGGAG	1 cut(s)	1236
Bpu10I	CCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	983
BsaJI	CCNNGG	3 cut(s)	295, 296, 378
BsaWI	WCCGGW	2 cut(s)	848, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 384, 1243
Bse1I	ACTGG	7 cut(s)	325, 511, 706, 904, 1003, 1071, 1230
Bse3DI	GCAATG	1 cut(s)	1155
BseAI	TCCGGA	1 cut(s)	1099
BseBI	CCWGG	2 cut(s)	297, 380
BseDI	CCNNGG	3 cut(s)	295, 296, 378
BseGI	GGATG	1 cut(s)	1018
BseLI	CCNNNNNNNGG	3 cut(s)	383, 384, 1243
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	2 cut(s)	23, 939
BseNI	ACTGG	7 cut(s)	325, 511, 706, 904, 1003, 1071, 1230
BseXI	GCAGC	5 cut(s)	347, 436, 679, 715, 760
BseYI	CCCAGC	1 cut(s)	1116
Bsh1236I	CGCG	1 cut(s)	569
BshFI	GGCC	2 cut(s)	294, 1113
BshNI	GGYRCC	2 cut(s)	96, 830
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	3 cut(s)	161, 849, 1100
BslFI	GGGAC	3 cut(s)	5, 143, 1232
BslI	CCNNNNNNNGG	3 cut(s)	383, 384, 1243
BsmFI	GGGAC	3 cut(s)	5, 143, 1232
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	294, 1113
BsoBI	CYCGRG	1 cut(s)	837
Bsp1286I	GDGCHC	2 cut(s)	209, 349
Bsp13I	TCCGGA	1 cut(s)	1099
Bsp143I	GATC	2 cut(s)	598, 841
BspACI	CCGC	3 cut(s)	5, 142, 203
BspANI	GGCC	2 cut(s)	294, 1113
BspCNI	CTCAG	2 cut(s)	24, 940
BspEI	TCCGGA	1 cut(s)	1099
BspFNI	CGCG	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	7 cut(s)	21, 98, 159, 208, 832, 1114, 1248
BspMI	ACCTGC	1 cut(s)	208
BspT107I	GGYRCC	2 cut(s)	96, 830
BsrDI	GCAATG	1 cut(s)	1155
BsrI	ACTGG	7 cut(s)	325, 511, 706, 904, 1003, 1071, 1230
BssECI	CCNNGG	3 cut(s)	295, 296, 378
BssMI	GATC	2 cut(s)	598, 841
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	297, 380
Bst4CI	ACNGT	4 cut(s)	58, 273, 544, 898
BstAPI	GCANNNNNTGC	2 cut(s)	449, 725
BstBAI	YACGTR	1 cut(s)	983
BstC8I	GCNNGC	5 cut(s)	205, 407, 441, 592, 1093
BstDEI	CTNAG	2 cut(s)	32, 948
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	2 cut(s)	601, 844
BstMBI	GATC	2 cut(s)	598, 841
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 566, 725
BstNI	CCWGG	2 cut(s)	297, 380
BstNSI	RCATGY	2 cut(s)	360, 1207
BstSCI	CCNGG	3 cut(s)	159, 295, 378
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	5 cut(s)	347, 436, 679, 715, 760
BstV2I	GAAGAC	1 cut(s)	1149
BstX2I	RGATCY	2 cut(s)	598, 841
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	2 cut(s)	598, 841
BstZ17I	GTATAC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	294, 1113
BtsCI	GGATG	1 cut(s)	1018
BtsIMutI	CAGTG	3 cut(s)	54, 269, 1197
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	5 cut(s)	205, 407, 441, 592, 1093
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	102
Cfr13I	GGNCC	6 cut(s)	19, 157, 293, 1001, 1112, 1246
Csp6I	GTAC	3 cut(s)	932, 984, 1124
CviAII	CATG	8 cut(s)	103, 282, 357, 863, 890, 923, 1204, 1265
CviQI	GTAC	3 cut(s)	932, 984, 1124
DdeI	CTNAG	2 cut(s)	32, 948
DpnI	GATC	2 cut(s)	600, 843
DpnII	GATC	2 cut(s)	598, 841
DraIII	CACNNNGTG	1 cut(s)	1275
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	209, 349
Eco47I	GGWCC	4 cut(s)	19, 157, 1001, 1246
Eco57I	CTGAAG	2 cut(s)	455, 590
Eco88I	CYCGRG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	1246
EcoRII	CCWGG	2 cut(s)	295, 378
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	2 cut(s)	209, 349
FaeI	CATG	8 cut(s)	106, 285, 360, 866, 893, 926, 1207, 1268
FalI	AAGNNNNNCTT	2 cut(s)	1022, 1054
FaqI	GGGAC	3 cut(s)	5, 143, 1232
FatI	CATG	8 cut(s)	102, 281, 356, 862, 889, 922, 1203, 1264
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	1198
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	361, 450, 693, 729, 774
FokI	GGATG	1 cut(s)	1025
FriOI	GRGCYC	2 cut(s)	209, 349
Fsp4HI	GCNGC	5 cut(s)	361, 450, 693, 729, 774
FspBI	CTAG	2 cut(s)	1086, 1272
GluI	GCNGC	5 cut(s)	361, 450, 693, 729, 774
GsaI	CCCAGC	1 cut(s)	1120
GsuI	CTGGAG	1 cut(s)	1236
HaeIII	GGCC	2 cut(s)	294, 1113
HapII	CCGG	3 cut(s)	161, 849, 1100
Hin1II	CATG	8 cut(s)	106, 285, 360, 866, 893, 926, 1207, 1268
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	3 cut(s)	8, 14, 1130
HpaII	CCGG	3 cut(s)	161, 849, 1100
HphI	GGTGA	1 cut(s)	965
Hpy166II	GTNNAC	2 cut(s)	166, 901
Hpy188I	TCNGA	7 cut(s)	13, 129, 351, 435, 846, 1022, 1144
Hpy188III	TCNNGA	5 cut(s)	103, 837, 839, 1004, 1100
Hpy8I	GTNNAC	2 cut(s)	166, 901
HpyAV	CCTTC	2 cut(s)	348, 1017
HpyCH4III	ACNGT	4 cut(s)	58, 273, 544, 898
HpyCH4IV	ACGT	1 cut(s)	982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 566, 725
HpyF3I	CTNAG	2 cut(s)	32, 948
HpySE526I	ACGT	1 cut(s)	982
Hsp92II	CATG	8 cut(s)	106, 285, 360, 866, 893, 926, 1207, 1268
Kpn2I	TCCGGA	1 cut(s)	1099
Kzo9I	GATC	2 cut(s)	598, 841
LmnI	GCTCC	2 cut(s)	62, 212
Lsp1109I	GCAGC	5 cut(s)	347, 436, 679, 715, 760
LweI	GCATC	5 cut(s)	153, 715, 753, 1003, 1135
MaeI	CTAG	2 cut(s)	1086, 1272
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	4 cut(s)	454, 978, 1206, 1232
MalI	GATC	2 cut(s)	600, 843
MboI	GATC	2 cut(s)	598, 841
MboII	GAAGA	3 cut(s)	734, 1074, 1149
MflI	RGATCY	2 cut(s)	598, 841
MhlI	GDGCHC	2 cut(s)	209, 349
MluCI	AATT	7 cut(s)	106, 259, 496, 742, 872, 1138, 1180
MluI	ACGCGT	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	1099
MseI	TTAA	3 cut(s)	173, 317, 869
MslI	CAYNNNNRTG	3 cut(s)	152, 789, 927
MspI	CCGG	3 cut(s)	161, 849, 1100
MspR9I	CCNGG	3 cut(s)	161, 297, 380
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	2 cut(s)	297, 380
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	449, 566, 725
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	1198
NdeII	GATC	2 cut(s)	598, 841
NlaIII	CATG	8 cut(s)	106, 285, 360, 866, 893, 926, 1207, 1268
NlaIV	GGNNCC	7 cut(s)	21, 98, 159, 208, 832, 1114, 1248
NmuCI	GTSAC	2 cut(s)	978, 1206
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	2 cut(s)	360, 1207
PaeR7I	CTCGAG	1 cut(s)	837
PagI	TCATGA	1 cut(s)	102
PasI	CCCWGGG	1 cut(s)	296
PciI	ACATGT	1 cut(s)	1203
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	8, 14, 1130
PkrI	GCNGC	5 cut(s)	362, 451, 694, 730, 775
Ppu21I	YACGTR	1 cut(s)	983
PpuMI	RGGWCCY	1 cut(s)	1246
PscI	ACATGT	1 cut(s)	1203
PshBI	ATTAAT	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	1246
Psp6I	CCWGG	2 cut(s)	295, 378
PspFI	CCCAGC	1 cut(s)	1116
PspGI	CCWGG	2 cut(s)	295, 378
PspN4I	GGNNCC	7 cut(s)	21, 98, 159, 208, 832, 1114, 1248
PspPI	GGNCC	6 cut(s)	19, 157, 293, 1001, 1112, 1246
PspPPI	RGGWCCY	1 cut(s)	1246
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	598, 841
RsaI	GTAC	3 cut(s)	933, 985, 1125
RsaNI	GTAC	3 cut(s)	932, 984, 1124
RseI	CAYNNNNRTG	3 cut(s)	152, 789, 927
SaqAI	TTAA	3 cut(s)	173, 317, 869
SatI	GCNGC	5 cut(s)	361, 450, 693, 729, 774
Sau3AI	GATC	2 cut(s)	598, 841
Sau96I	GGNCC	6 cut(s)	19, 157, 293, 1001, 1112, 1246
ScrFI	CCNGG	3 cut(s)	161, 297, 380
SduI	GDGCHC	2 cut(s)	209, 349
SfaNI	GCATC	5 cut(s)	153, 715, 753, 1003, 1135
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	837
SinI	GGWCC	4 cut(s)	19, 157, 1001, 1246
SlaI	CTCGAG	1 cut(s)	837
SmiMI	CAYNNNNRTG	3 cut(s)	152, 789, 927
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
Sse9I	AATT	7 cut(s)	106, 259, 496, 742, 872, 1138, 1180
SsiI	CCGC	3 cut(s)	5, 142, 203
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	2 cut(s)	1086, 1272
StyD4I	CCNGG	3 cut(s)	159, 295, 378
TaaI	ACNGT	4 cut(s)	58, 273, 544, 898
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	2 cut(s)	554, 838
TaqII	GACCGA	3 cut(s)	7, 770, 966
TasI	AATT	7 cut(s)	106, 259, 496, 742, 872, 1138, 1180
TatI	WGTACW	1 cut(s)	931
TfiI	GAWTC	3 cut(s)	8, 14, 1130
Tru1I	TTAA	3 cut(s)	173, 317, 869
Tru9I	TTAA	3 cut(s)	173, 317, 869
TscAI	CASTG	3 cut(s)	61, 276, 1197
TseFI	GTSAC	2 cut(s)	978, 1206
TseI	GCWGC	5 cut(s)	360, 449, 692, 728, 773
Tsp45I	GTSAC	2 cut(s)	978, 1206
TspDTI	ATGAA	6 cut(s)	119, 255, 537, 622, 736, 1166
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	61, 276, 1197
VpaK11BI	GGWCC	4 cut(s)	19, 157, 1001, 1246
VspI	ATTAAT	1 cut(s)	173
XapI	RAATTY	4 cut(s)	496, 742, 1138, 1180
XceI	RCATGY	2 cut(s)	360, 1207
XhoI	CTCGAG	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	1086, 1272
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.