AT5G26740

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009384
Physical Location & Seq
Forward (+)
9291839 .. 9294860
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G26740.2

Sequence Viewer

Length: 1269 bp
ATGGCGGATTTGATACCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGTTGGAGCTATTGCTTTGGCGATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACCAACTTATCAGAGATATATTGTACGCATTATCTTCATGGTCCCGGTTTATGCCTTCATGTCATTCTTGTCTCTTGTGTTACCCAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATATGAAGCATGGGTTATCTACAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGATCAGTAGTGCTTAGTTTGAGTGGTCGTTCTTTAAAGCCATCATGGTCTCTTATGACATGTTGCTTTCCGCCTTTAACACTGGACGGGCGATTTATTCGACGATGCAAGCAGGGTTGTCTGCAATTTGTAATTCTGAAGCCTATCCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGGGAAGTACAAGGATGGAAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTATACCATATCCTACACAGTGGCTTTGTACGCACTTGTGCTGTTTTATATGGCATGCAGAGATCTACTTCAGCCATTCAATCCAGTCCCAAAGTTTGTGATCATAAAGTCTGTGGTCTTTCTAACCTATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAGTGCAGAGGCAGCAGCTCATTTTCAAAATTTTATAATATGTGTCGAGATGCTCATTGCTGCAGCATGTCATTTCTATGCTTTTCCATACAAGGAGTATGCTGGTGCCAATGTTGGTGGATCTGGCAGTTTCTCAGGAAGCTTATCACATGCTGTAAAACTAAATGACTTTTACCATGACACTGTTCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAAGATGGTGGTGACGAGGGGACAAAGAAGTACCGATCGAGAACCTTTGTGCCAACTGGCCAAGAGATGGATGCAATGAGAAAAAACAAACCTGTGTATGCAAACAAGATAGATGGTGTTTCAGTCTCAAGTAGTCTATCTTCAGAGGCAAGCTCACCTAAAAGCTCCAGCGTAACTTCTGATCCTGCACGCTCTGATGCTGTGAAATCTTCCTTGCTGGTGGATGCCTCAGATTCTCTTGAAACAATGTATGATATGTCGCTCATTGACATTGATCTATCTAGTTTCCCCAGCAATGTCCCATCTGCAAGTGAAAGTGGGCCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

422

Amino Acids

47.0

Weight (kDa)

8.23

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 11 - 269 5.1e-93 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 812
AccB7I CCANNNNNTGG 1 cut(s) 1006
AciI CCGC 2 cut(s) 5, 362
AclWI GGATC 3 cut(s) 301, 835, 1115
AcoI YGGCCR 1 cut(s) 997
AcsI RAATTY 2 cut(s) 490, 736
AcuI CTGAAG 3 cut(s) 449, 584, 1065
AfaI GTAC 5 cut(s) 49, 135, 479, 560, 971
AfiI CCNNNNNNNGG 1 cut(s) 1006
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 4 cut(s) 100, 610, 734, 1181
AjnI CCWGG 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 6 cut(s) 59, 201, 725, 849, 1092, 1104
AluI AGCT 6 cut(s) 59, 201, 725, 849, 1092, 1104
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 3 cut(s) 186, 345, 1069
AlwI GGATC 3 cut(s) 301, 835, 1115
AoxI GGCC 3 cut(s) 286, 997, 1259
ApeKI GCWGC 5 cut(s) 686, 719, 722, 767, 770
ApoI RAATTY 2 cut(s) 490, 736
AspS9I GGNCC 3 cut(s) 151, 287, 1259
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 887, 962, 1086
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 999
BanI GGYRCC 1 cut(s) 812
BarI GAAGNNNNNNTAC 2 cut(s) 1063, 1095
Bbv12I GWGCWC 1 cut(s) 930
BbvI GCAGC 5 cut(s) 673, 731, 734, 754, 782
BccI CCATC 8 cut(s) 340, 479, 533, 938, 945, 1000, 1046, 1249
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 502, 630
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 186, 345, 1069
BfaI CTAG 3 cut(s) 440, 1221, 1263
BfmI CTRYAG 2 cut(s) 85, 768
BglII AGATCT 1 cut(s) 592
BisI GCNGC 5 cut(s) 687, 720, 723, 768, 771
BlsI GCNGC 5 cut(s) 688, 721, 724, 769, 772
Bme1390I CCNGG 2 cut(s) 155, 291
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 3 cut(s) 151, 287, 1259
BmiI GGNNCC 3 cut(s) 111, 153, 814
BmrFI CCNGG 2 cut(s) 155, 291
BmsI GCATC 6 cut(s) 100, 386, 747, 1000, 1126, 1153
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
BpmI CTGGAG 1 cut(s) 1090
BpuEI CTTGAG 1 cut(s) 1051
BpuMI CCSGG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 1006
Bse1I ACTGG 4 cut(s) 378, 614, 898, 1000
Bse3DI GCAATG 3 cut(s) 762, 1020, 1240
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 490, 1015, 1168
BseLI CCNNNNNNNGG 1 cut(s) 1006
BseMI GCAATG 3 cut(s) 762, 1020, 1240
BseMII CTCAG 2 cut(s) 855, 1182
BseNI ACTGG 4 cut(s) 378, 614, 898, 1000
BseXI GCAGC 5 cut(s) 673, 731, 734, 754, 782
BseYI CCCAGC 1 cut(s) 1229
BsgI GTGCAG 2 cut(s) 732, 1110
Bsh1285I CGRYCG 1 cut(s) 977
BshFI GGCC 3 cut(s) 288, 999, 1261
BshNI GGYRCC 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 977
BsiHKAI GWGCWC 1 cut(s) 930
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 4 cut(s) 137, 602, 973, 1223
BslI CCNNNNNNNGG 1 cut(s) 1006
BsmAI GTCTC 3 cut(s) 186, 345, 1069
BsmFI GGGAC 4 cut(s) 137, 602, 973, 1223
BsnI GGCC 3 cut(s) 288, 999, 1261
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 930
Bsp143I GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
BspACI CCGC 2 cut(s) 5, 362
BspANI GGCC 3 cut(s) 288, 999, 1261
BspCNI CTCAG 2 cut(s) 854, 1181
BspLI GGNNCC 3 cut(s) 111, 153, 814
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 3 cut(s) 301, 835, 1115
BspT107I GGYRCC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 3 cut(s) 762, 1020, 1240
BsrI ACTGG 4 cut(s) 378, 614, 898, 1000
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 52, 550, 892
BstC8I GCNNGC 4 cut(s) 401, 586, 1090, 1129
BstDEI CTNAG 3 cut(s) 305, 841, 1168
BstF5I GGATG 3 cut(s) 490, 1015, 1168
BstKTI GATC 8 cut(s) 296, 505, 595, 633, 830, 977, 1123, 1216
BstMAI GTCTC 3 cut(s) 186, 345, 1069
BstMBI GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
BstMCI CGRYCG 1 cut(s) 977
BstMWI GCNNNNNNNGC 2 cut(s) 560, 719
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 4 cut(s) 354, 588, 777, 860
BstSCI CCNGG 2 cut(s) 153, 289
BstSFI CTRYAG 2 cut(s) 85, 768
BstV1I GCAGC 5 cut(s) 673, 731, 734, 754, 782
BstX2I RGATCY 2 cut(s) 592, 827
BstXI CCANNNNNNTGG 1 cut(s) 944
BstYI RGATCY 2 cut(s) 592, 827
BsuRI GGCC 3 cut(s) 288, 999, 1261
BtsCI GGATG 3 cut(s) 490, 1015, 1168
BtsIMutI CAGTG 3 cut(s) 371, 555, 888
Cac8I GCNNGC 4 cut(s) 401, 586, 1090, 1129
Cfr13I GGNCC 3 cut(s) 151, 287, 1259
Csp6I GTAC 5 cut(s) 48, 134, 478, 559, 970
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviQI GTAC 5 cut(s) 48, 134, 478, 559, 970
DdeI CTNAG 3 cut(s) 305, 841, 1168
DpnI GATC 8 cut(s) 295, 504, 594, 632, 829, 976, 1122, 1215
DpnII GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
DraI TTTAAA 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 997
EciI GGCGGA 2 cut(s) 20, 351
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 449, 584, 1065
EcoRII CCWGG 1 cut(s) 289
FaqI GGGAC 4 cut(s) 137, 602, 973, 1223
FbaI TGATCA 2 cut(s) 502, 630
Fnu4HI GCNGC 5 cut(s) 687, 720, 723, 768, 771
FokI GGATG 3 cut(s) 497, 1022, 1175
Fsp4HI GCNGC 5 cut(s) 687, 720, 723, 768, 771
FspBI CTAG 3 cut(s) 440, 1221, 1263
GluI GCNGC 5 cut(s) 687, 720, 723, 768, 771
GsaI CCCAGC 1 cut(s) 1233
GsuI CTGGAG 1 cut(s) 1090
HaeIII GGCC 3 cut(s) 288, 999, 1261
HapII CCGG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 3 cut(s) 215, 699, 1172
HpaII CCGG 1 cut(s) 155
HphI GGTGA 3 cut(s) 887, 962, 1086
Hpy166II GTNNAC 1 cut(s) 895
Hpy188I TCNGA 7 cut(s) 27, 123, 429, 1084, 1120, 1135, 1171
Hpy188III TCNNGA 7 cut(s) 696, 754, 843, 917, 941, 978, 1178
Hpy8I GTNNAC 1 cut(s) 895
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 3 cut(s) 52, 550, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 719
HpyF3I CTNAG 3 cut(s) 305, 841, 1168
Ksp22I TGATCA 2 cut(s) 502, 630
Kzo9I GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
LmnI GCTCC 3 cut(s) 56, 910, 1109
Lsp1109I GCAGC 5 cut(s) 673, 731, 734, 754, 782
LweI GCATC 6 cut(s) 100, 386, 747, 1000, 1126, 1153
MaeI CTAG 3 cut(s) 440, 1221, 1263
MaeIII GTNAC 4 cut(s) 189, 448, 950, 1111
MalI GATC 8 cut(s) 295, 504, 594, 632, 829, 976, 1122, 1215
MboI GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
MboII GAAGA 3 cut(s) 136, 1071, 1140
MflI RGATCY 2 cut(s) 592, 827
MhlI GDGCHC 1 cut(s) 930
MlsI TGGCCA 1 cut(s) 999
MluCI AATT 6 cut(s) 100, 253, 416, 423, 490, 736
MluNI TGGCCA 1 cut(s) 999
MmeI TCCRAC 2 cut(s) 34, 262
MnlI CCTC 5 cut(s) 278, 709, 949, 1078, 1177
Mox20I TGGCCA 1 cut(s) 999
MscI TGGCCA 1 cut(s) 999
MseI TTAA 3 cut(s) 326, 368, 495
MslI CAYNNNNRTG 4 cut(s) 455, 783, 921, 942
Msp20I TGGCCA 1 cut(s) 999
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 155, 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 560, 719
NciI CCSGG 1 cut(s) 155
NdeII GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
NlaIV GGNNCC 3 cut(s) 111, 153, 814
NmuCI GTSAC 2 cut(s) 448, 950
NspI RCATGY 4 cut(s) 354, 588, 777, 860
OliI CACNNNNGTG 1 cut(s) 455
PaeI GCATGC 1 cut(s) 588
PciI ACATGT 1 cut(s) 350
PfeI GAWTC 3 cut(s) 215, 699, 1172
PflMI CCANNNNNTGG 1 cut(s) 1006
PkrI GCNGC 5 cut(s) 688, 721, 724, 769, 772
Ple19I CGATCG 1 cut(s) 977
PscI ACATGT 1 cut(s) 350
PsiI TTATAA 1 cut(s) 743
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 1229
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 111, 153, 814
PspPI GGNCC 3 cut(s) 151, 287, 1259
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 2 cut(s) 592, 827
PvuI CGATCG 1 cut(s) 977
RsaI GTAC 5 cut(s) 49, 135, 479, 560, 971
RsaNI GTAC 5 cut(s) 48, 134, 478, 559, 970
RseI CAYNNNNRTG 4 cut(s) 455, 783, 921, 942
SaqAI TTAA 3 cut(s) 326, 368, 495
SatI GCNGC 5 cut(s) 687, 720, 723, 768, 771
Sau3AI GATC 8 cut(s) 293, 502, 592, 630, 827, 974, 1120, 1213
Sau96I GGNCC 3 cut(s) 151, 287, 1259
ScrFI CCNGG 2 cut(s) 155, 291
SduI GDGCHC 1 cut(s) 930
SfaNI GCATC 6 cut(s) 100, 386, 747, 1000, 1126, 1153
SfcI CTRYAG 2 cut(s) 85, 768
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 4 cut(s) 455, 783, 921, 942
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
SphI GCATGC 1 cut(s) 588
Sse9I AATT 6 cut(s) 100, 253, 416, 423, 490, 736
SsiI CCGC 2 cut(s) 5, 362
SspI AATATT 1 cut(s) 31
SspMI CTAG 3 cut(s) 440, 1221, 1263
StyD4I CCNGG 2 cut(s) 153, 289
TaaI ACNGT 3 cut(s) 52, 550, 892
TaqI TCGA 4 cut(s) 203, 391, 753, 977
TasI AATT 6 cut(s) 100, 253, 416, 423, 490, 736
TatI WGTACW 2 cut(s) 47, 477
TfiI GAWTC 3 cut(s) 215, 699, 1172
Tru1I TTAA 3 cut(s) 326, 368, 495
Tru9I TTAA 3 cut(s) 326, 368, 495
TscAI CASTG 3 cut(s) 378, 555, 895
TseFI GTSAC 2 cut(s) 448, 950
TseI GCWGC 5 cut(s) 686, 719, 722, 767, 770
Tsp45I GTSAC 2 cut(s) 448, 950
TspDTI ATGAA 5 cut(s) 68, 136, 157, 249, 691
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 3 cut(s) 378, 555, 895
Van91I CCANNNNNTGG 1 cut(s) 1006
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 2 cut(s) 490, 736
XceI RCATGY 4 cut(s) 354, 588, 777, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XspI CTAG 3 cut(s) 440, 1221, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.