Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009384

Physical Location & Seq

Genomic Coordinates Forward (+)

18959270 .. 18962331

Gene Structure 3062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGAGTCGACCCCAATCTACCTGAGCATTATTGCTTTTTTCTGTACTGTTGGAGCCATGGCTTTGGCCATTATGCACATCTACAGGCACCTCATGAATTACACTGAACCAACTTATCAGAGATACATTGTCCGCATCATCTTCATGGTCCCGGTATATGCATTGATGTCGTTCTTATCCCTTGTTAATCCTGCGGGTTCAATCTACTTTAATTCCATTAGAGAAGTCTATGAAGCTTGGGTCATTTATAATTTTTTATCGCTGTGCTTGGCATGGGTTGGCGGCCCAGGATCTGTTGTTGTAAGTCTCAGCGGTAGGGTTCTAAAGCCTTCCGTGGTTCTGATGACATGTTGCCTCCCTCCCATACCCCTGGATGGGCGCTTTATACGTAGGTGCAAACAAGGATGTTTGCAGTTTGTGATCCTGAAGCCTGTATTAGCTGTTGTTACCCTCATACTTTATGCTAAGGGGAAATATGCAGATGGAAATTTCAGTCCAAGACAGTCATACCTGTATCTCACTATTATCTACACTATCTCATACACAACAGCTCTCTATGCTTTGGCATTGTTTTACTTTGCTTGCAGAGATCTACTCCAGCCCTTCAATCCAGTTCCAAAGTTTATTATAATCAAATCTGTGGTTTTCCTCACTTATTGGCAGGGTGTGTTGGTCTTCCTTGCTGCGAAATCTGGGTTAATAAAGAATGCAGAGAATGCTGCTCAGTACCAAGATTTCATAATATGTGTTGAGATGCTTATTGCTGCTATTGGTCATTTATATGCATTCCCTTATAAGGAGTATGCTGGTGCAAATATTGGCGGGCCTCGAGGTCTGACTGGAAGCCTCTCACATGCCGTAAAGTTGAATGACTTTTACCATGATACAGTCCACCAGTTTGCCCCTACTTACCATGATTATGTACTCTACAACCCTAGTGAGGGTGACGAGGGAAAGAGGAAGTATCGGTCACGCACCTTTGTGCCGACTGGCCCAGAGATGGATACTGTCAGAAGAAACAAGAACATGTTTGGGAACAAGATAGATGACATACAGCTTTCAAGTCTTTCATCTTCTAGCTCAAGCACCCCGGATAGTTCTGGTCCAGTACCCGAGTCTGCGAGTTCAGATGCAATAAAGTCTTCCCTTCTTGTTGATACCTCAAATTCTGCATCAGTGCCGTATGACATGTCACTCATCGACTTAGACTTGAACAGTTACCCCGCGAAGGTTCCTTCAGCAAATGAAGGTGGCACTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

422

Amino Acids

46.72

Weight (kDa)

8.6

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05940 AT5G26740 AT5G26740 AT5G26740
fragaria_vesca	FvH4_6g08800 FvH4_6g08800
malus_domestica	MD04G1183500.v1.1 MD12G1196900.v1.1
prunus_persica	Prupe.6G302000_v2.0.a1
pyrus_communis	pycom04g16200 pycom12g18320
rosa_chinensis	RchiOBHm_Chr3g0459061
rosa_laevigata	RLG00000025122
rosa_multiflora	Rmu_sc0004343.1_g000013 Rmu_sc0033812.1_g000006
rosa_roxburghii	Rroxscaffold_6G00420540
rosa_rugosa	Rorug03G0033300
rosa_samantha	Rh3AG091200 Rh3BG094200 Rh3CG094700 Rh3DG094700
rosa_wichuraiana	Rw3G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	252, 632, 798
AbsI	CCTCGAGG	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	1229
AciI	CCGC	7 cut(s)	5, 136, 197, 285, 315, 825, 1227
AclWI	GGATC	2 cut(s)	301, 418
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	490, 1168
AcuI	CTGAAG	2 cut(s)	449, 1224
AdeI	CACNNNGTG	1 cut(s)	1263
AfaI	GTAC	4 cut(s)	49, 731, 927, 1113
AfiI	CCNNNNNNNGG	7 cut(s)	377, 378, 799, 943, 944, 1003, 1231
AflIII	ACRYGT	3 cut(s)	350, 1029, 1191
AgsI	TTSAA	5 cut(s)	204, 610, 871, 1065, 1216
AjnI	CCWGG	2 cut(s)	289, 372
AleI	CACNNNNGTG	1 cut(s)	983
AluBI	AGCT	5 cut(s)	239, 443, 554, 1060, 1083
AluI	AGCT	5 cut(s)	239, 443, 554, 1060, 1083
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	301, 418
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	2 cut(s)	831, 1115
AoxI	GGCC	4 cut(s)	69, 286, 827, 994
ApeKI	GCWGC	3 cut(s)	686, 722, 767
ApoI	RAATTY	2 cut(s)	490, 1168
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	5 cut(s)	151, 287, 827, 995, 1106
AsuC2I	CCSGG	2 cut(s)	155, 1094
AsuHPI	GGTGA	1 cut(s)	959
AvaI	CYCGRG	2 cut(s)	831, 1115
AvaII	GGWCC	2 cut(s)	151, 1106
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	670, 1137
BbvI	GCAGC	3 cut(s)	673, 709, 754
BccI	CCATC	3 cut(s)	371, 479, 997
BceAI	ACGGC	2 cut(s)	845, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BciT130I	CCWGG	2 cut(s)	291, 374
BciVI	GTATCC	1 cut(s)	1000
BcnI	CCSGG	2 cut(s)	155, 1094
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	3 cut(s)	939, 1080, 1260
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	1000
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	4 cut(s)	286, 687, 723, 768
BlsI	GCNGC	4 cut(s)	287, 688, 724, 769
Bme1390I	CCNGG	4 cut(s)	155, 291, 374, 1094
Bme18I	GGWCC	2 cut(s)	151, 1106
BmeT110I	CYCGRG	2 cut(s)	831, 1115
BmgT120I	GGNCC	5 cut(s)	151, 287, 827, 995, 1106
BmiI	GGNNCC	4 cut(s)	58, 92, 153, 1236
BmrFI	CCNGG	4 cut(s)	155, 291, 374, 1094
BmsI	GCATC	4 cut(s)	147, 747, 1123, 1184
BpiI	GAAGAC	2 cut(s)	670, 1137
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
BpmI	CTGGAG	1 cut(s)	584
Bpu10I	CCTNAGC	2 cut(s)	26, 468
BpuEI	CTTGAG	1 cut(s)	1069
BpuMI	CCSGG	2 cut(s)	155, 1094
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	60, 289, 336, 372, 1092
Bsc4I	CCNNNNNNNGG	7 cut(s)	377, 378, 799, 943, 944, 1003, 1231
Bse1I	ACTGG	5 cut(s)	614, 847, 898, 997, 1109
BseBI	CCWGG	2 cut(s)	291, 374
BseDI	CCNNGG	5 cut(s)	60, 289, 336, 372, 1092
BseGI	GGATG	2 cut(s)	382, 413
BseLI	CCNNNNNNNGG	7 cut(s)	377, 378, 799, 943, 944, 1003, 1231
BseMII	CTCAG	3 cut(s)	17, 325, 740
BseNI	ACTGG	5 cut(s)	614, 847, 898, 997, 1109
BseXI	GCAGC	3 cut(s)	673, 709, 754
Bsh1236I	CGCG	1 cut(s)	1229
BshFI	GGCC	4 cut(s)	71, 288, 829, 996
BshNI	GGYRCC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	831, 1115
BsiSI	CCGG	2 cut(s)	155, 1094
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	7 cut(s)	377, 378, 799, 943, 944, 1003, 1231
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	3 cut(s)	715, 724, 788
BsnI	GGCC	4 cut(s)	71, 288, 829, 996
BsoBI	CYCGRG	2 cut(s)	831, 1115
Bsp143I	GATC	3 cut(s)	293, 423, 592
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	7 cut(s)	5, 136, 197, 285, 315, 825, 1227
BspANI	GGCC	4 cut(s)	71, 288, 829, 996
BspCNI	CTCAG	3 cut(s)	18, 324, 739
BspFNI	CGCG	1 cut(s)	1229
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	4 cut(s)	58, 92, 153, 1236
BspPI	GGATC	2 cut(s)	301, 418
BspT107I	GGYRCC	1 cut(s)	90
BsrI	ACTGG	5 cut(s)	614, 847, 898, 997, 1109
BssECI	CCNNGG	5 cut(s)	60, 289, 336, 372, 1092
BssMI	GATC	3 cut(s)	293, 423, 592
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	291, 374
Bst4CI	ACNGT	5 cut(s)	52, 507, 892, 1012, 1220
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	586, 827
BstDEI	CTNAG	5 cut(s)	26, 311, 468, 726, 1207
BstDSI	CCRYGG	2 cut(s)	60, 336
BstF5I	GGATG	2 cut(s)	382, 413
BstFNI	CGCG	1 cut(s)	1229
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	3 cut(s)	296, 426, 595
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	3 cut(s)	293, 423, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	560, 719
BstNI	CCWGG	2 cut(s)	291, 374
BstNSI	RCATGY	4 cut(s)	354, 860, 1033, 1195
BstSCI	CCNGG	4 cut(s)	153, 289, 372, 1092
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	392
BstUI	CGCG	1 cut(s)	1229
BstV1I	GCAGC	3 cut(s)	673, 709, 754
BstV2I	GAAGAC	2 cut(s)	670, 1137
BstX2I	RGATCY	2 cut(s)	293, 592
BstXI	CCANNNNNNTGG	2 cut(s)	67, 373
BstYI	RGATCY	2 cut(s)	293, 592
BsuI	GTATCC	1 cut(s)	1000
BsuRI	GGCC	4 cut(s)	71, 288, 829, 996
BtgI	CCRYGG	2 cut(s)	60, 336
BtsCI	GGATG	2 cut(s)	382, 413
BtsIMutI	CAGTG	2 cut(s)	105, 1185
Cac8I	GCNNGC	2 cut(s)	586, 827
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	5 cut(s)	151, 287, 827, 995, 1106
Csp6I	GTAC	4 cut(s)	48, 730, 926, 1112
CviQI	GTAC	4 cut(s)	48, 730, 926, 1112
DdeI	CTNAG	5 cut(s)	26, 311, 468, 726, 1207
DpnI	GATC	3 cut(s)	295, 425, 594
DpnII	GATC	3 cut(s)	293, 423, 592
DraIII	CACNNNGTG	1 cut(s)	1263
EaeI	YGGCCR	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	20
Eco105I	TACGTA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	151, 1106
Eco57I	CTGAAG	2 cut(s)	449, 1224
Eco88I	CYCGRG	2 cut(s)	831, 1115
EcoRII	CCWGG	2 cut(s)	289, 372
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	166, 790
ErhI	CCWWGG	1 cut(s)	60
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	3 cut(s)	190, 818, 1234
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	4 cut(s)	286, 687, 723, 768
FokI	GGATG	2 cut(s)	389, 420
Fsp4HI	GCNGC	4 cut(s)	286, 687, 723, 768
FspBI	CTAG	3 cut(s)	939, 1080, 1260
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	4 cut(s)	286, 687, 723, 768
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	71, 288, 829, 996
HapII	CCGG	2 cut(s)	155, 1094
HhaI	GCGC	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	8, 1118
HpaII	CCGG	2 cut(s)	155, 1094
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	2 cut(s)	12, 895
Hpy188I	TCNGA	5 cut(s)	123, 345, 840, 1016, 1132
Hpy188III	TCNNGA	2 cut(s)	97, 427
Hpy8I	GTNNAC	2 cut(s)	12, 895
HpyAV	CCTTC	6 cut(s)	342, 616, 1160, 1225, 1244, 1248
HpyCH4III	ACNGT	5 cut(s)	52, 507, 892, 1012, 1220
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	560, 719
HpyF3I	CTNAG	5 cut(s)	26, 311, 468, 726, 1207
HpySE526I	ACGT	1 cut(s)	391
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	293, 423, 592
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	673, 709, 754
LweI	GCATC	4 cut(s)	147, 747, 1123, 1184
MaeI	CTAG	3 cut(s)	939, 1080, 1260
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	5 cut(s)	448, 947, 972, 1194, 1220
MalI	GATC	3 cut(s)	295, 425, 594
MboI	GATC	3 cut(s)	293, 423, 592
MboII	GAAGA	5 cut(s)	136, 670, 1029, 1068, 1137
MflI	RGATCY	2 cut(s)	293, 592
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	5 cut(s)	100, 214, 253, 490, 1168
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	17, 1127
MmeI	TCCRAC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	166, 790
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	3 cut(s)	189, 213, 701
MslI	CAYNNNNRTG	4 cut(s)	146, 783, 921, 983
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	155, 1094
MspR9I	CCNGG	4 cut(s)	155, 291, 374, 1094
Mva1269I	GAATGC	3 cut(s)	715, 724, 788
MvaI	CCWGG	2 cut(s)	291, 374
MvnI	CGCG	1 cut(s)	1229
MwoI	GCNNNNNNNGC	2 cut(s)	560, 719
NciI	CCSGG	2 cut(s)	155, 1094
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	293, 423, 592
NlaIV	GGNNCC	4 cut(s)	58, 92, 153, 1236
NmuCI	GTSAC	3 cut(s)	947, 972, 1194
NsiI	ATGCAT	2 cut(s)	166, 790
NspI	RCATGY	4 cut(s)	354, 860, 1033, 1195
OliI	CACNNNNGTG	1 cut(s)	983
PaeR7I	CTCGAG	1 cut(s)	831
PagI	TCATGA	1 cut(s)	96
PciI	ACATGT	3 cut(s)	350, 1029, 1191
PctI	GAATGC	3 cut(s)	715, 724, 788
PkrI	GCNGC	4 cut(s)	287, 688, 724, 769
PleI	GAGTC	2 cut(s)	16, 1126
PpsI	GAGTC	2 cut(s)	16, 1126
Ppu21I	YACGTR	1 cut(s)	392
PscI	ACATGT	3 cut(s)	350, 1029, 1191
PsiI	TTATAA	3 cut(s)	252, 632, 798
Psp6I	CCWGG	2 cut(s)	289, 372
PspGI	CCWGG	2 cut(s)	289, 372
PspN4I	GGNNCC	4 cut(s)	58, 92, 153, 1236
PspPI	GGNCC	5 cut(s)	151, 287, 827, 995, 1106
PspXI	VCTCGAGB	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	293, 592
RsaI	GTAC	4 cut(s)	49, 731, 927, 1113
RsaNI	GTAC	4 cut(s)	48, 730, 926, 1112
RseI	CAYNNNNRTG	4 cut(s)	146, 783, 921, 983
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	189, 213, 701
SatI	GCNGC	4 cut(s)	286, 687, 723, 768
Sau3AI	GATC	3 cut(s)	293, 423, 592
Sau96I	GGNCC	5 cut(s)	151, 287, 827, 995, 1106
SchI	GAGTC	2 cut(s)	17, 1127
ScrFI	CCNGG	4 cut(s)	155, 291, 374, 1094
SfaNI	GCATC	4 cut(s)	147, 747, 1123, 1184
SfcI	CTRYAG	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	151, 1106
SlaI	CTCGAG	1 cut(s)	831
SmiMI	CAYNNNNRTG	4 cut(s)	146, 783, 921, 983
SmlI	CTYRAG	2 cut(s)	831, 1084
SmoI	CTYRAG	2 cut(s)	831, 1084
SnaBI	TACGTA	1 cut(s)	392
Sse9I	AATT	5 cut(s)	100, 214, 253, 490, 1168
SsiI	CCGC	7 cut(s)	5, 136, 197, 285, 315, 825, 1227
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	3 cut(s)	939, 1080, 1260
StyD4I	CCNGG	4 cut(s)	153, 289, 372, 1092
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	5 cut(s)	52, 507, 892, 1012, 1220
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	3 cut(s)	11, 832, 1203
TaqII	GACCGA	1 cut(s)	960
TasI	AATT	5 cut(s)	100, 214, 253, 490, 1168
TatI	WGTACW	2 cut(s)	47, 925
TauI	GCSGC	1 cut(s)	288
Tru1I	TTAA	3 cut(s)	189, 213, 701
Tru9I	TTAA	3 cut(s)	189, 213, 701
TscAI	CASTG	2 cut(s)	112, 1185
TseFI	GTSAC	3 cut(s)	947, 972, 1194
TseI	GCWGC	3 cut(s)	686, 722, 767
Tsp45I	GTSAC	3 cut(s)	947, 972, 1194
TspDTI	ATGAA	6 cut(s)	113, 136, 249, 730, 1062, 1263
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	112, 1185
VpaK11BI	GGWCC	2 cut(s)	151, 1106
XapI	RAATTY	2 cut(s)	490, 1168
XceI	RCATGY	4 cut(s)	354, 860, 1033, 1195
XhoI	CTCGAG	1 cut(s)	831
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	3 cut(s)	939, 1080, 1260
Zsp2I	ATGCAT	2 cut(s)	166, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.