RLG00000025122

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009384
Physical Location & Seq
Forward (+)
42094531 .. 42100663
6133 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025122

Sequence Viewer

Length: 1572 bp
ATGTATGGCCTCCCAAACTTCCACCTCGGTTATATTTCTCCGAGAGTCGGATATTTCCTCCCGGGTCTTCCCAACCCGACATGGATTCCGGTTCGACCTGAATGCCCGCTTCACCGGCTTCCTTCTTCTTCGTCTTCATCCTCCTTTGATCTTATCGTTCCCGACGGTTTCACATCTTACGTTGGCAGATCGGTTTCCGTCGATTTTTTTCCCGATTCTTCCAGATTTTCCAGACTCCTAAGGGTCCCAATTTTAAAGGTTTTGCGAATTTCTGATTCCGATCAGGTATTCAGAATGGCGGAATCGGAATCGGTCCCAATCTACCTGAGCATTGTTGCCTTTGTTTGCACTGTTGGAGCTATTGCTCTGGCAGTTATGCACATCTACAGGCACCTCATGAATTACACCGAACCGACTTATCAGAGATACATTGTTCGCATCATTTTTATGGTCCCGGTATATGCATTAATGTCTTTCTTATCCCTTGTTATACCAGCGGGCTCCATCTACTTTAGTTCCATCAGGGAAGTCTATGAAGCTTGGGTCATTTACAATTTTCTATCGCTGTGCTTGGCATGGGTTGGTGGCCCAGGGTCTGTTGTCGTAAGTTTAACTGGTAGGGTTATAAAGCCTTCGTGGGCTCTGATGACATGCTGCTTCCCTCCCATACCCCTGGACGGGCGTTTTATCCGTAGGTGCAAGCAAGGTTGTTTGCAGTTTGTGTTTCTGAAGCCTGCATTAGCTGCTGTTACTCTCATACTTTACGCAAAAGGGAAATATGCAGATGGAAATTTCAGTCCAAACCAGTCATACCTGTATCTCACTATTATCTATACAGTCTCATACTCGATGGCTCTTTACGCGTTGGCATTGTTCTATGTGGCTTGCAGAGATCTGCTTCAGCCTTTCAACCCTGTTCCAAAGTTCATCATAATCAAGTCTGTCGTTTTCCTTACTTATTGGCAGGGTGTGTTGGTTTTCCTTGCTGCAAAAACTGGATTAATAAAGAATGCAGAAGATGCTGCTCAATATCAAAATTTCATAATATGTGTGGAGATGCTACTTGCTGCTGTCGGTCATCTATATGCATTTCCTTACAAGGAGTATGCTGGTGCAAATATTGGTGCCTCTCGAGATCTGACCGGAAGCCTCTCTCATGCCTTAAAATTGAATGACTTTTACCATGATACTGTCCACCAGTTTGCCCCGACTTACCATGATTATGTACTCTACAACTCTACTGAGGGTGATGAGGGAAAGAGGACGTATCGGTCACGCACCTTTGTGCCGACTGGTCCAGAGATGGATGCTGTCAGAAGGAACAAGAACATCTTTGGCAACAAGATAGATGACATACAACTTTCCAGTCTATCATCTTCTAGTGCAAGCACTCCGAAAAAATCTGGCCCCCAGCCTGTACCTGATTCTGCAAATTCAGATGCAATGAAATCTTCCCTACTCGTTGATACCTCAAATTCCTCATCAGTGCCATATGACATGTCACTTATTGACTTGGACTTGTCCAGTTACCCCACAAAGGTCCCTCCAGCAAACGAACATGGCACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

524

Amino Acids

58.26

Weight (kDa)

8.75

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 110 - 369 1.3e-91 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AasI GACNNNNNNGTC 1 cut(s) 1270
AccB1I GGYRCC 2 cut(s) 390, 1124
AccII CGCG 1 cut(s) 863
AciI CCGC 3 cut(s) 107, 299, 497
AcsI RAATTY 5 cut(s) 267, 790, 1036, 1432, 1474
AcuI CTGAAG 2 cut(s) 749, 884
AdeI CACNNNGTG 1 cut(s) 1569
AfaI GTAC 2 cut(s) 1227, 1419
AfiI CCNNNNNNNGG 4 cut(s) 47, 677, 678, 1537
AflIII ACRYGT 2 cut(s) 861, 1497
AgsI TTSAA 2 cut(s) 910, 1171
AjnI CCWGG 2 cut(s) 589, 672
AleI CACNNNNGTG 1 cut(s) 1283
AluBI AGCT 3 cut(s) 359, 539, 743
AluI AGCT 3 cut(s) 359, 539, 743
Alw26I GTCTC 1 cut(s) 844
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 2 cut(s) 61, 1131
AoxI GGCC 3 cut(s) 7, 586, 1405
ApeKI GCWGC 5 cut(s) 654, 743, 986, 1022, 1067
ApoI RAATTY 5 cut(s) 267, 790, 1036, 1432, 1474
AseI ATTAAT 2 cut(s) 467, 1001
AspS9I GGNCC 7 cut(s) 244, 313, 451, 587, 1295, 1406, 1540
AsuC2I CCSGG 3 cut(s) 62, 63, 455
AsuHPI GGTGA 2 cut(s) 104, 1259
AvaI CYCGRG 2 cut(s) 61, 1131
AvaII GGWCC 5 cut(s) 244, 313, 451, 1295, 1540
AxyI CCTNAGG 1 cut(s) 239
BanI GGYRCC 2 cut(s) 390, 1124
BanII GRGCYC 2 cut(s) 503, 643
BbsI GAAGAC 2 cut(s) 59, 126
BbvI GCAGC 5 cut(s) 641, 730, 973, 1009, 1054
BccI CCATC 5 cut(s) 512, 527, 779, 844, 1297
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 2 cut(s) 591, 674
BcnI CCSGG 3 cut(s) 62, 63, 455
BcoDI GTCTC 1 cut(s) 844
BfaI CTAG 2 cut(s) 1380, 1566
BfmI CTRYAG 1 cut(s) 385
BglII AGATCT 2 cut(s) 892, 1135
BisI GCNGC 5 cut(s) 655, 744, 987, 1023, 1068
BlsI GCNGC 5 cut(s) 656, 745, 988, 1024, 1069
Bme1390I CCNGG 5 cut(s) 62, 63, 455, 591, 674
Bme18I GGWCC 5 cut(s) 244, 313, 451, 1295, 1540
BmeT110I CYCGRG 2 cut(s) 61, 1131
BmgT120I GGNCC 7 cut(s) 244, 313, 451, 587, 1295, 1406, 1540
BmiI GGNNCC 9 cut(s) 245, 246, 315, 392, 453, 502, 1126, 1408, 1542
BmrFI CCNGG 5 cut(s) 62, 63, 455, 591, 674
BmsI GCATC 5 cut(s) 447, 1009, 1047, 1297, 1429
BpiI GAAGAC 2 cut(s) 59, 126
BpmI CTGGAG 1 cut(s) 1530
Bpu10I CCTNAGC 1 cut(s) 326
BpuMI CCSGG 3 cut(s) 62, 63, 455
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 5 cut(s) 25, 61, 589, 590, 672
BsaWI WCCGGW 2 cut(s) 88, 1142
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 677, 678, 1537
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 7 cut(s) 619, 805, 1000, 1198, 1297, 1365, 1524
Bse21I CCTNAGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 1449
Bse8I GATNNNNATC 1 cut(s) 279
BseBI CCWGG 2 cut(s) 591, 674
BseDI CCNNGG 5 cut(s) 25, 61, 589, 590, 672
BseGI GGATG 2 cut(s) 137, 1312
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 4 cut(s) 47, 677, 678, 1537
BseMI GCAATG 1 cut(s) 1449
BseMII CTCAG 2 cut(s) 317, 1233
BseNI ACTGG 7 cut(s) 619, 805, 1000, 1198, 1297, 1365, 1524
BseXI GCAGC 5 cut(s) 641, 730, 973, 1009, 1054
BseYI CCCAGC 1 cut(s) 1410
Bsh1236I CGCG 1 cut(s) 863
BshFI GGCC 3 cut(s) 9, 588, 1407
BshNI GGYRCC 2 cut(s) 390, 1124
BsiHKCI CYCGRG 2 cut(s) 61, 1131
BsiSI CCGG 5 cut(s) 62, 89, 115, 455, 1143
BslFI GGGAC 4 cut(s) 230, 299, 437, 1526
BslI CCNNNNNNNGG 4 cut(s) 47, 677, 678, 1537
BsmAI GTCTC 1 cut(s) 844
BsmFI GGGAC 4 cut(s) 230, 299, 437, 1526
BsmI GAATGC 2 cut(s) 107, 1015
BsnI GGCC 3 cut(s) 9, 588, 1407
BsoBI CYCGRG 2 cut(s) 61, 1131
Bsp1286I GDGCHC 2 cut(s) 503, 643
Bsp143I GATC 5 cut(s) 148, 188, 280, 892, 1135
BspACI CCGC 3 cut(s) 107, 299, 497
BspANI GGCC 3 cut(s) 9, 588, 1407
BspCNI CTCAG 2 cut(s) 318, 1234
BspFNI CGCG 1 cut(s) 863
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 9 cut(s) 245, 246, 315, 392, 453, 502, 1126, 1408, 1542
BspT107I GGYRCC 2 cut(s) 390, 1124
BsrDI GCAATG 1 cut(s) 1449
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 7 cut(s) 619, 805, 1000, 1198, 1297, 1365, 1524
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 5 cut(s) 25, 61, 589, 590, 672
BssMI GATC 5 cut(s) 148, 188, 280, 892, 1135
Bst2UI CCWGG 2 cut(s) 591, 674
Bst4CI ACNGT 4 cut(s) 167, 352, 838, 1192
BstAPI GCANNNNNTGC 2 cut(s) 743, 1019
BstC8I GCNNGC 6 cut(s) 107, 499, 701, 735, 886, 1387
BstDEI CTNAG 3 cut(s) 239, 326, 1242
BstF5I GGATG 2 cut(s) 137, 1312
BstFNI CGCG 1 cut(s) 863
BstKTI GATC 5 cut(s) 151, 191, 283, 895, 1138
BstMAI GTCTC 1 cut(s) 844
BstMBI GATC 5 cut(s) 148, 188, 280, 892, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 115, 743, 860, 1019
BstNI CCWGG 2 cut(s) 591, 674
BstNSI RCATGY 2 cut(s) 654, 1501
BstSCI CCNGG 5 cut(s) 60, 61, 453, 589, 672
BstSFI CTRYAG 1 cut(s) 385
BstUI CGCG 1 cut(s) 863
BstV1I GCAGC 5 cut(s) 641, 730, 973, 1009, 1054
BstV2I GAAGAC 2 cut(s) 59, 126
BstX2I RGATCY 2 cut(s) 892, 1135
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 2 cut(s) 892, 1135
Bsu36I CCTNAGG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 9, 588, 1407
BtsCI GGATG 2 cut(s) 137, 1312
BtsIMutI CAGTG 2 cut(s) 348, 1491
Cac8I GCNNGC 6 cut(s) 107, 499, 701, 735, 886, 1387
CaiI CAGNNNCTG 1 cut(s) 596
CciI TCATGA 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 7 cut(s) 244, 313, 451, 587, 1295, 1406, 1540
Cfr9I CCCGGG 1 cut(s) 61
Csp6I GTAC 2 cut(s) 1226, 1418
CviAII CATG 9 cut(s) 81, 397, 576, 651, 1157, 1184, 1217, 1498, 1559
CviQI GTAC 2 cut(s) 1226, 1418
DdeI CTNAG 3 cut(s) 239, 326, 1242
DpnI GATC 5 cut(s) 150, 190, 282, 894, 1137
DpnII GATC 5 cut(s) 148, 188, 280, 892, 1135
DraI TTTAAA 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 1569
DrdI GACNNNNNNGTC 1 cut(s) 1270
DseDI GACNNNNNNGTC 1 cut(s) 1270
EciI GGCGGA 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 503, 643
Eco47I GGWCC 5 cut(s) 244, 313, 451, 1295, 1540
Eco57I CTGAAG 2 cut(s) 749, 884
Eco81I CCTNAGG 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 61, 1131
EcoO109I RGGNCCY 2 cut(s) 244, 1540
EcoRII CCWGG 2 cut(s) 589, 672
EcoT22I ATGCAT 2 cut(s) 466, 1090
EcoT38I GRGCYC 2 cut(s) 503, 643
FaeI CATG 9 cut(s) 84, 400, 579, 654, 1160, 1187, 1220, 1501, 1562
FalI AAGNNNNNCTT 2 cut(s) 1316, 1348
FaqI GGGAC 4 cut(s) 230, 299, 437, 1526
FatI CATG 9 cut(s) 80, 396, 575, 650, 1156, 1183, 1216, 1497, 1558
FauI CCCGC 2 cut(s) 114, 490
FauNDI CATATG 1 cut(s) 1492
Fnu4HI GCNGC 5 cut(s) 655, 744, 987, 1023, 1068
FokI GGATG 2 cut(s) 124, 1319
FriOI GRGCYC 2 cut(s) 503, 643
Fsp4HI GCNGC 5 cut(s) 655, 744, 987, 1023, 1068
FspBI CTAG 2 cut(s) 1380, 1566
GluI GCNGC 5 cut(s) 655, 744, 987, 1023, 1068
GsaI CCCAGC 1 cut(s) 1414
GsuI CTGGAG 1 cut(s) 1530
HaeIII GGCC 3 cut(s) 9, 588, 1407
HapII CCGG 5 cut(s) 62, 89, 115, 455, 1143
Hin1II CATG 9 cut(s) 84, 400, 579, 654, 1160, 1187, 1220, 1501, 1562
HindIII AAGCTT 1 cut(s) 537
HinfI GANTC 8 cut(s) 45, 85, 215, 234, 275, 302, 308, 1424
HpaII CCGG 5 cut(s) 62, 89, 115, 455, 1143
HphI GGTGA 2 cut(s) 104, 1259
Hpy166II GTNNAC 1 cut(s) 1195
Hpy188III TCNNGA 8 cut(s) 161, 212, 222, 231, 397, 1131, 1133, 1298
Hpy8I GTNNAC 1 cut(s) 1195
Hpy99I CGWCG 2 cut(s) 167, 203
HpyAV CCTTC 3 cut(s) 132, 642, 1311
HpyCH4III ACNGT 4 cut(s) 167, 352, 838, 1192
HpyCH4IV ACGT 2 cut(s) 180, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 743, 860, 1019
HpyF3I CTNAG 3 cut(s) 239, 326, 1242
HpySE526I ACGT 2 cut(s) 180, 1265
Hsp92II CATG 9 cut(s) 84, 400, 579, 654, 1160, 1187, 1220, 1501, 1562
KflI GGGWCCC 1 cut(s) 244
Kzo9I GATC 5 cut(s) 148, 188, 280, 892, 1135
LmnI GCTCC 2 cut(s) 356, 506
Lsp1109I GCAGC 5 cut(s) 641, 730, 973, 1009, 1054
LweI GCATC 5 cut(s) 447, 1009, 1047, 1297, 1429
MaeI CTAG 2 cut(s) 1380, 1566
MaeII ACGT 2 cut(s) 180, 1265
MaeIII GTNAC 4 cut(s) 748, 1272, 1500, 1526
MalI GATC 5 cut(s) 150, 190, 282, 894, 1137
MboI GATC 5 cut(s) 148, 188, 280, 892, 1135
MboII GAAGA 8 cut(s) 59, 117, 120, 126, 210, 1028, 1368, 1443
MflI RGATCY 2 cut(s) 892, 1135
MhlI GDGCHC 2 cut(s) 503, 643
MluCI AATT 9 cut(s) 249, 267, 400, 553, 790, 1036, 1166, 1432, 1474
MluI ACGCGT 1 cut(s) 861
MlyI GAGTC 2 cut(s) 54, 228
MmeI TCCRAC 2 cut(s) 28, 334
Mph1103I ATGCAT 2 cut(s) 466, 1090
MseI TTAA 5 cut(s) 254, 467, 611, 1001, 1163
MslI CAYNNNNRTG 4 cut(s) 446, 1083, 1221, 1283
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 5 cut(s) 62, 89, 115, 455, 1143
MspR9I CCNGG 5 cut(s) 62, 63, 455, 591, 674
Mva1269I GAATGC 2 cut(s) 107, 1015
MvaI CCWGG 2 cut(s) 591, 674
MvnI CGCG 1 cut(s) 863
MwoI GCNNNNNNNGC 4 cut(s) 115, 743, 860, 1019
NciI CCSGG 3 cut(s) 62, 63, 455
NdeI CATATG 1 cut(s) 1492
NdeII GATC 5 cut(s) 148, 188, 280, 892, 1135
NlaIII CATG 9 cut(s) 84, 400, 579, 654, 1160, 1187, 1220, 1501, 1562
NlaIV GGNNCC 9 cut(s) 245, 246, 315, 392, 453, 502, 1126, 1408, 1542
NmuCI GTSAC 2 cut(s) 1272, 1500
NsiI ATGCAT 2 cut(s) 466, 1090
NspI RCATGY 2 cut(s) 654, 1501
OliI CACNNNNGTG 1 cut(s) 1283
PaeR7I CTCGAG 1 cut(s) 1131
PagI TCATGA 1 cut(s) 396
PasI CCCWGGG 1 cut(s) 590
PciI ACATGT 1 cut(s) 1497
PctI GAATGC 2 cut(s) 107, 1015
PfeI GAWTC 6 cut(s) 85, 215, 275, 302, 308, 1424
PkrI GCNGC 5 cut(s) 656, 745, 988, 1024, 1069
PleI GAGTC 2 cut(s) 53, 228
PpsI GAGTC 2 cut(s) 53, 228
PpuMI RGGWCCY 2 cut(s) 244, 1540
PscI ACATGT 1 cut(s) 1497
PshBI ATTAAT 2 cut(s) 467, 1001
PsiI TTATAA 1 cut(s) 626
Psp5II RGGWCCY 2 cut(s) 244, 1540
Psp6I CCWGG 2 cut(s) 589, 672
PspFI CCCAGC 1 cut(s) 1410
PspGI CCWGG 2 cut(s) 589, 672
PspN4I GGNNCC 9 cut(s) 245, 246, 315, 392, 453, 502, 1126, 1408, 1542
PspPI GGNCC 7 cut(s) 244, 313, 451, 587, 1295, 1406, 1540
PspPPI RGGWCCY 2 cut(s) 244, 1540
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 2 cut(s) 892, 1135
RsaI GTAC 2 cut(s) 1227, 1419
RsaNI GTAC 2 cut(s) 1226, 1418
RseI CAYNNNNRTG 4 cut(s) 446, 1083, 1221, 1283
SaqAI TTAA 5 cut(s) 254, 467, 611, 1001, 1163
SatI GCNGC 5 cut(s) 655, 744, 987, 1023, 1068
Sau3AI GATC 5 cut(s) 148, 188, 280, 892, 1135
Sau96I GGNCC 7 cut(s) 244, 313, 451, 587, 1295, 1406, 1540
SchI GAGTC 2 cut(s) 54, 228
ScrFI CCNGG 5 cut(s) 62, 63, 455, 591, 674
SduI GDGCHC 2 cut(s) 503, 643
SfaNI GCATC 5 cut(s) 447, 1009, 1047, 1297, 1429
SfcI CTRYAG 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 1131
SinI GGWCC 5 cut(s) 244, 313, 451, 1295, 1540
SlaI CTCGAG 1 cut(s) 1131
SmaI CCCGGG 1 cut(s) 63
SmiMI CAYNNNNRTG 4 cut(s) 446, 1083, 1221, 1283
SmlI CTYRAG 1 cut(s) 1131
SmoI CTYRAG 1 cut(s) 1131
Sse9I AATT 9 cut(s) 249, 267, 400, 553, 790, 1036, 1166, 1432, 1474
SsiI CCGC 3 cut(s) 107, 299, 497
SspI AATATT 1 cut(s) 1120
SspMI CTAG 2 cut(s) 1380, 1566
StyD4I CCNGG 5 cut(s) 60, 61, 453, 589, 672
TaaI ACNGT 4 cut(s) 167, 352, 838, 1192
TaiI ACGT 2 cut(s) 183, 1268
TaqI TCGA 4 cut(s) 94, 201, 848, 1132
TaqII GACCGA 3 cut(s) 301, 1064, 1260
TasI AATT 9 cut(s) 249, 267, 400, 553, 790, 1036, 1166, 1432, 1474
TatI WGTACW 1 cut(s) 1225
TfiI GAWTC 6 cut(s) 85, 215, 275, 302, 308, 1424
Tru1I TTAA 5 cut(s) 254, 467, 611, 1001, 1163
Tru9I TTAA 5 cut(s) 254, 467, 611, 1001, 1163
TscAI CASTG 2 cut(s) 355, 1491
TseFI GTSAC 2 cut(s) 1272, 1500
TseI GCWGC 5 cut(s) 654, 743, 986, 1022, 1067
Tsp45I GTSAC 2 cut(s) 1272, 1500
TspDTI ATGAA 6 cut(s) 126, 413, 549, 916, 1030, 1460
TspGWI ACGGA 2 cut(s) 187, 680
TspMI CCCGGG 1 cut(s) 61
TspRI CASTG 2 cut(s) 355, 1491
VpaK11BI GGWCC 5 cut(s) 244, 313, 451, 1295, 1540
VspI ATTAAT 2 cut(s) 467, 1001
XapI RAATTY 5 cut(s) 267, 790, 1036, 1432, 1474
XceI RCATGY 2 cut(s) 654, 1501
XhoI CTCGAG 1 cut(s) 1131
XmaI CCCGGG 1 cut(s) 61
XspI CTAG 2 cut(s) 1380, 1566
Zsp2I ATGCAT 2 cut(s) 466, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.