Rh3CG094700

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009384
Physical Location & Seq
Reverse (-)
7488319 .. 7493861
5543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG094700.1

Sequence Viewer

Length: 927 bp
ATGACATGCTGCTTCCCTCCCATACCCCTGGACGGGCGTTTTATCCGTAGGTGCAAGCAAGGTTGTTTGCAGTTTGTGTTTCTGAAGCCTGCATTAGCTGCTGTTACTCTCGTACTTTACGCAAAAGGGAAATATGCAGATGGAAATTTCAGTCCAAACCAGTCATACCTGTATCTCACTATTATCTATACAGTCTCATACTCGATGGCTCTTTACGCATTGGCATTGTTCTATGTGGCTTGCAGAGATCTGCTTCAGCCTTTCAACCCTGTTCCAAAGTTCATCATAATCAAGTCTGTCGTTTTCCTTACTTATTGGCAGGGTGTGTTGGTTTTCCTTGCTGCAAAAACTGGATTAATAAAGAATGCAGAAGATGCTGCTCAATATCAAAATTTCATAATATGTGTGGAGATGCTACTTGCTGCTGTCGGTCATCTATATGCATTTCCTTACAAGGAGTATGCTGGTGCAAATATTGGTGCCTCTCGAGATCTGACCGGAAGCCTCTCTCATGCCTTAAAATTGAATGACTTTTACCATGATACTGTCCACCAGTTTGCCCCGACTTACCATGATTATGTACTCTACAACTCTACTGAGGGTGATGAGGGAAAGAGGAAGTATCGGTCACGTACCTTTGTGCCGACTGGTCCAGAGATGGATGCTGTCAGAAGGAACAAGAACATCTTTGGCAACAAGATAGATGACATACAACTTTCCAGTCTATCATCTTCTAGTGCAAGCACTCCGAAAAAATCTGGCCCCCAGCCTGTACCTGATTCTGCAAATTCAGATGCAATGAAGTCTTCCCTGCTCGTTGATACCTCAAATTCCTCATCAGTGCCATATGACATGTCACTTATTGACTTGGACTTGTCCAGTTACCCCACAAAGGTCCCTCCAGCAAACGAACATGGCACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

308

Amino Acids

34.15

Weight (kDa)

8.58

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 2 - 154 1.1e-53 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AcsI RAATTY 4 cut(s) 145, 391, 787, 829
AcuI CTGAAG 2 cut(s) 104, 239
AdeI CACNNNGTG 1 cut(s) 924
AfaI GTAC 4 cut(s) 114, 582, 634, 774
AfiI CCNNNNNNNGG 3 cut(s) 32, 33, 892
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 265, 526
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 1 cut(s) 760
ApeKI GCWGC 5 cut(s) 9, 98, 341, 377, 422
ApoI RAATTY 4 cut(s) 145, 391, 787, 829
AseI ATTAAT 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 650, 761, 895
AsuHPI GGTGA 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 2 cut(s) 650, 895
BanI GGYRCC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 798
BbvI GCAGC 4 cut(s) 85, 328, 364, 409
BccI CCATC 3 cut(s) 134, 199, 652
BciT130I CCWGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 2 cut(s) 735, 921
BglII AGATCT 2 cut(s) 247, 490
BisI GCNGC 5 cut(s) 10, 99, 342, 378, 423
BlsI GCNGC 5 cut(s) 11, 100, 343, 379, 424
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 650, 895
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 3 cut(s) 650, 761, 895
BmiI GGNNCC 3 cut(s) 481, 763, 897
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 4 cut(s) 364, 402, 652, 784
BpiI GAAGAC 1 cut(s) 798
BpmI CTGGAG 1 cut(s) 885
BsaAI YACGTR 1 cut(s) 632
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 33, 892
Bse1I ACTGG 6 cut(s) 160, 355, 553, 652, 720, 879
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 667
BseLI CCNNNNNNNGG 3 cut(s) 32, 33, 892
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 6 cut(s) 160, 355, 553, 652, 720, 879
BseXI GCAGC 4 cut(s) 85, 328, 364, 409
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 1 cut(s) 762
BshNI GGYRCC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 3 cut(s) 32, 33, 892
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 881
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 762
BsoBI CYCGRG 1 cut(s) 486
Bsp143I GATC 2 cut(s) 247, 490
BspANI GGCC 1 cut(s) 762
BspCNI CTCAG 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 481, 763, 897
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 6 cut(s) 160, 355, 553, 652, 720, 879
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 247, 490
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 193, 547
BstAPI GCANNNNNTGC 2 cut(s) 98, 374
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 4 cut(s) 56, 90, 241, 742
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 667
BstKTI GATC 2 cut(s) 250, 493
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 247, 490
BstMWI GCNNNNNNNGC 3 cut(s) 98, 215, 374
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 9, 856
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 4 cut(s) 85, 328, 364, 409
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 247, 490
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 2 cut(s) 247, 490
BsuRI GGCC 1 cut(s) 762
BtsCI GGATG 1 cut(s) 667
BtsIMutI CAGTG 1 cut(s) 846
Cac8I GCNNGC 4 cut(s) 56, 90, 241, 742
Cfr13I GGNCC 3 cut(s) 650, 761, 895
Csp6I GTAC 4 cut(s) 113, 581, 633, 773
CviAII CATG 6 cut(s) 6, 512, 539, 572, 853, 914
CviJI RGCY 8 cut(s) 88, 98, 209, 239, 259, 504, 762, 769
CviKI_1 RGCY 8 cut(s) 88, 98, 209, 239, 259, 504, 762, 769
CviQI GTAC 4 cut(s) 113, 581, 633, 773
DdeI CTNAG 1 cut(s) 597
DpnI GATC 2 cut(s) 249, 492
DpnII GATC 2 cut(s) 247, 490
DraIII CACNNNGTG 1 cut(s) 924
Eco47I GGWCC 2 cut(s) 650, 895
Eco57I CTGAAG 2 cut(s) 104, 239
Eco88I CYCGRG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 895
EcoRII CCWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 445
FaeI CATG 6 cut(s) 9, 515, 542, 575, 856, 917
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 1 cut(s) 881
FatI CATG 6 cut(s) 5, 511, 538, 571, 852, 913
FauNDI CATATG 1 cut(s) 847
Fnu4HI GCNGC 5 cut(s) 10, 99, 342, 378, 423
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 5 cut(s) 10, 99, 342, 378, 423
FspBI CTAG 2 cut(s) 735, 921
GluI GCNGC 5 cut(s) 10, 99, 342, 378, 423
GsaI CCCAGC 1 cut(s) 769
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 1 cut(s) 762
HapII CCGG 1 cut(s) 498
Hin1II CATG 6 cut(s) 9, 515, 542, 575, 856, 917
HinfI GANTC 1 cut(s) 779
HpaII CCGG 1 cut(s) 498
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 5 cut(s) 84, 495, 671, 750, 793
Hpy188III TCNNGA 3 cut(s) 486, 488, 653
Hpy8I GTNNAC 1 cut(s) 550
HpyAV CCTTC 1 cut(s) 666
HpyCH4III ACNGT 2 cut(s) 193, 547
HpyCH4IV ACGT 1 cut(s) 631
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 215, 374
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 6 cut(s) 9, 515, 542, 575, 856, 917
Kzo9I GATC 2 cut(s) 247, 490
Lsp1109I GCAGC 4 cut(s) 85, 328, 364, 409
LweI GCATC 4 cut(s) 364, 402, 652, 784
MaeI CTAG 2 cut(s) 735, 921
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 4 cut(s) 103, 627, 855, 881
MalI GATC 2 cut(s) 249, 492
MboI GATC 2 cut(s) 247, 490
MboII GAAGA 3 cut(s) 383, 723, 798
MflI RGATCY 2 cut(s) 247, 490
MluCI AATT 5 cut(s) 145, 391, 521, 787, 829
MnlI CCTC 9 cut(s) 27, 493, 515, 592, 601, 609, 835, 844, 909
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 2 cut(s) 356, 518
MslI CAYNNNNRTG 2 cut(s) 438, 576
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 98, 215, 374
NdeI CATATG 1 cut(s) 847
NdeII GATC 2 cut(s) 247, 490
NlaIII CATG 6 cut(s) 9, 515, 542, 575, 856, 917
NlaIV GGNNCC 3 cut(s) 481, 763, 897
NmuCI GTSAC 2 cut(s) 627, 855
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 2 cut(s) 9, 856
PaeR7I CTCGAG 1 cut(s) 486
PciI ACATGT 1 cut(s) 852
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 779
PkrI GCNGC 5 cut(s) 11, 100, 343, 379, 424
Ppu21I YACGTR 1 cut(s) 632
PpuMI RGGWCCY 1 cut(s) 895
PscI ACATGT 1 cut(s) 852
PshBI ATTAAT 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 895
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 3 cut(s) 481, 763, 897
PspPI GGNCC 3 cut(s) 650, 761, 895
PspPPI RGGWCCY 1 cut(s) 895
PsuI RGATCY 2 cut(s) 247, 490
RsaI GTAC 4 cut(s) 114, 582, 634, 774
RsaNI GTAC 4 cut(s) 113, 581, 633, 773
RseI CAYNNNNRTG 2 cut(s) 438, 576
SaqAI TTAA 2 cut(s) 356, 518
SatI GCNGC 5 cut(s) 10, 99, 342, 378, 423
Sau3AI GATC 2 cut(s) 247, 490
Sau96I GGNCC 3 cut(s) 650, 761, 895
ScrFI CCNGG 1 cut(s) 29
SfaNI GCATC 4 cut(s) 364, 402, 652, 784
Sfr274I CTCGAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 650, 895
SlaI CTCGAG 1 cut(s) 486
SmiMI CAYNNNNRTG 2 cut(s) 438, 576
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 5 cut(s) 145, 391, 521, 787, 829
SspI AATATT 1 cut(s) 475
SspMI CTAG 2 cut(s) 735, 921
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 193, 547
TaiI ACGT 1 cut(s) 634
TaqI TCGA 2 cut(s) 203, 487
TaqII GACCGA 2 cut(s) 419, 615
TasI AATT 5 cut(s) 145, 391, 521, 787, 829
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 2 cut(s) 356, 518
Tru9I TTAA 2 cut(s) 356, 518
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 2 cut(s) 627, 855
TseI GCWGC 5 cut(s) 9, 98, 341, 377, 422
Tsp45I GTSAC 2 cut(s) 627, 855
TspDTI ATGAA 3 cut(s) 271, 385, 815
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 846
VpaK11BI GGWCC 2 cut(s) 650, 895
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 4 cut(s) 145, 391, 787, 829
XceI RCATGY 2 cut(s) 9, 856
XhoI CTCGAG 1 cut(s) 486
XspI CTAG 2 cut(s) 735, 921
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.