FvH4_6g08800

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009384
Physical Location & Seq
Reverse (-)
5228213 .. 5233952
5740 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08800.t2

Sequence Viewer

Length: 1272 bp
ATGGCGGAATCGGTCCCAATCTACCTGAGCATTGTTGCCTTTATCTGCACTGTTGGAGCTATTGCTTTGGCGGTTTTGCATATCTACAGGCATCTCATGAACTACACCGAACCGACTTATCAGAGATACATTGTTCGCATCATTTTTATGGTCCCGGTATACGCATTAATGTCTTTCTTATCCCTCGTTATACCTGCGGGCTCCATCTACTTTAGTTCCATCAGGGAAGTCTATGAAGCTTGGGTCATTTACAATTTTCTGTCGCTGTGTTTAGCATGGGTTGGTGGTCCAGGATCTGTCGTAATAAGTTTAACTGGTAGGGTTATAAAGCCTTCTTGGGCTCTGATGACGTGCTGCTTCCCTCCCATACCCCTGGACGGGCGTTTTATACGTAGGTGCAAGCAAGGTTGTTTGCAGTTTGTATTTCTGAAACCTGCATTAGCTGCTGTTACTCTGATACTTTACGCAAAAGGGAAATATGCAGATGGAAATTTCAGTCCAAACCAGTCATACCTGTATCTCACTATTATCTATACAGTCTCATACTCGATGGCTCTTTACGCATTGGCATTGTTCTATGTGGCTTGTAGAGATCTGCTTCAGCCTTTCAATCCTGTTCCAAAGTTCATCATAATCAAGTCTGTCGTTTTTCTTACTTATTGGCAGGGTGTGTTGGTTTTCCTTGCTGCGAAGACTGGATTAATAAAGAATGCAGAAGATGCTGCTCAATTTCAAAATTTCATAATATGTGTGGAGATGCTACTTGCTGCTGTGGGTCATCTATATGCATTTCCTTACAAGGAGTATGCTGGTGCTAATATTGGTGCCTCTGGAGATCTCACGGGAAGCCTTGCTCATGCTGTAAAATTAAATGATTTTTACCATGATACTGTCCACCAGTTTGCCCCGACTTACCATGATTATGTACTCTACAACTCTTCTGAGGGTGACGAGGGAAAGAGAAAGTATCGATCACGCACATTTGTACCGACTGGTCCAGAGATGGATGCTGTCAGAAGGAACAAGAACATCTTTGGCAACAAGCTAGATGAGATACAGCTTTCCAGTCTCTCATCTTCTAGTACAAGCACTCCCAATGATTCTGGCCGGATGCCTGTGCCTGTGCCACCTCCAAACTCAGATGCAATGAACTCTTCCCTGCTCCTTGATACCTCAAATTCCTCGTCAGTGCCATATGACATGTCACTTATCGACTTGGACTTGTCCAGTTATCCCACAAAGGTTCTTCCAGCAAATGAAGGCACTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

424

Amino Acids

46.96

Weight (kDa)

8.28

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 10 - 269 1.5e-91 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
Acc36I ACCTGC 2 cut(s) 202, 442
AccB1I GGYRCC 1 cut(s) 824
AccI GTMKAC 1 cut(s) 159
AciI CCGC 3 cut(s) 5, 71, 197
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 3 cut(s) 490, 736, 1177
AcuI CTGAAG 1 cut(s) 584
AdeI CACNNNGTG 1 cut(s) 1269
AfaI GTAC 3 cut(s) 927, 987, 1084
AfiI CCNNNNNNNGG 2 cut(s) 377, 378
AflIII ACRYGT 1 cut(s) 1200
AgsI TTSAA 2 cut(s) 610, 734
AjiI CACGTC 1 cut(s) 351
AjnI CCWGG 2 cut(s) 289, 372
AluBI AGCT 5 cut(s) 59, 239, 443, 1045, 1060
AluI AGCT 5 cut(s) 59, 239, 443, 1045, 1060
Alw26I GTCTC 2 cut(s) 544, 1073
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 1105
ApeKI GCWGC 5 cut(s) 354, 443, 686, 722, 767
ApoI RAATTY 3 cut(s) 490, 736, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 1169, 1201
AseI ATTAAT 2 cut(s) 167, 701
AspS9I GGNCC 4 cut(s) 13, 151, 287, 995
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 959
AvaII GGWCC 4 cut(s) 13, 151, 287, 995
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BanI GGYRCC 1 cut(s) 824
BanII GRGCYC 2 cut(s) 203, 343
BbsI GAAGAC 1 cut(s) 698
BbvI GCAGC 5 cut(s) 341, 430, 673, 709, 754
BccI CCATC 5 cut(s) 212, 227, 479, 544, 997
BciT130I CCWGG 2 cut(s) 291, 374
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 544, 1073
BfaI CTAG 3 cut(s) 1046, 1080, 1266
BfmI CTRYAG 1 cut(s) 85
BfuAI ACCTGC 2 cut(s) 202, 442
BglII AGATCT 2 cut(s) 592, 835
BisI GCNGC 5 cut(s) 355, 444, 687, 723, 768
BlsI GCNGC 5 cut(s) 356, 445, 688, 724, 769
Bme1390I CCNGG 3 cut(s) 155, 291, 374
Bme18I GGWCC 4 cut(s) 13, 151, 287, 995
BmgBI CACGTC 1 cut(s) 351
BmgT120I GGNCC 4 cut(s) 13, 151, 287, 995
BmiI GGNNCC 4 cut(s) 15, 153, 202, 826
BmrFI CCNGG 3 cut(s) 155, 291, 374
BmsI GCATC 7 cut(s) 100, 147, 709, 747, 997, 1101, 1132
BpiI GAAGAC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 852
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 970
BsaAI YACGTR 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 1075, 1105
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 378
Bse1I ACTGG 7 cut(s) 319, 505, 700, 898, 997, 1065, 1227
Bse3DI GCAATG 1 cut(s) 1152
BseBI CCWGG 2 cut(s) 291, 374
BseCI ATCGAT 1 cut(s) 970
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 1012, 1116
BseLI CCNNNNNNNGG 2 cut(s) 377, 378
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 3 cut(s) 17, 933, 1152
BseNI ACTGG 7 cut(s) 319, 505, 700, 898, 997, 1065, 1227
BseXI GCAGC 5 cut(s) 341, 430, 673, 709, 754
BsgI GTGCAG 1 cut(s) 31
BshFI GGCC 1 cut(s) 1107
BshNI GGYRCC 1 cut(s) 824
BshVI ATCGAT 1 cut(s) 970
BsiSI CCGG 2 cut(s) 155, 1108
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 377, 378
BsmAI GTCTC 2 cut(s) 544, 1073
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 1 cut(s) 1107
Bsp1286I GDGCHC 2 cut(s) 203, 343
Bsp143I GATC 4 cut(s) 293, 592, 835, 971
BspACI CCGC 3 cut(s) 5, 71, 197
BspANI GGCC 1 cut(s) 1107
BspCNI CTCAG 3 cut(s) 18, 934, 1151
BspDI ATCGAT 1 cut(s) 970
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 15, 153, 202, 826
BspMI ACCTGC 2 cut(s) 202, 442
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 1152
BsrI ACTGG 7 cut(s) 319, 505, 700, 898, 997, 1065, 1227
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 4 cut(s) 293, 592, 835, 971
BssNAI GTATAC 1 cut(s) 160
Bst1107I GTATAC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 291, 374
Bst4CI ACNGT 3 cut(s) 52, 538, 892
Bst6I CTCTTC 2 cut(s) 943, 1159
BstAPI GCANNNNNTGC 2 cut(s) 443, 719
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 199, 401
BstDEI CTNAG 3 cut(s) 26, 942, 1138
BstF5I GGATG 2 cut(s) 1012, 1116
BstKTI GATC 4 cut(s) 296, 595, 838, 974
BstMAI GTCTC 2 cut(s) 544, 1073
BstMBI GATC 4 cut(s) 293, 592, 835, 971
BstMWI GCNNNNNNNGC 3 cut(s) 443, 560, 719
BstNI CCWGG 2 cut(s) 291, 374
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 3 cut(s) 153, 289, 372
BstSFI CTRYAG 1 cut(s) 85
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 5 cut(s) 341, 430, 673, 709, 754
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 3 cut(s) 293, 592, 835
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 3 cut(s) 293, 592, 835
BstZ17I GTATAC 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 970
BsuRI GGCC 1 cut(s) 1107
BsuTUI ATCGAT 1 cut(s) 970
BtrI CACGTC 1 cut(s) 351
BtsCI GGATG 2 cut(s) 1012, 1116
BtsIMutI CAGTG 2 cut(s) 48, 1194
BveI ACCTGC 2 cut(s) 202, 442
Cac8I GCNNGC 2 cut(s) 199, 401
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 4 cut(s) 13, 151, 287, 995
ClaI ATCGAT 1 cut(s) 970
Csp6I GTAC 3 cut(s) 926, 986, 1083
CviAII CATG 6 cut(s) 97, 276, 857, 884, 917, 1201
CviQI GTAC 3 cut(s) 926, 986, 1083
DdeI CTNAG 3 cut(s) 26, 942, 1138
DpnI GATC 4 cut(s) 295, 594, 837, 973
DpnII GATC 4 cut(s) 293, 592, 835, 971
DraIII CACNNNGTG 1 cut(s) 1269
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 2 cut(s) 943, 1159
EarI CTCTTC 2 cut(s) 943, 1159
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 392
Eco24I GRGCYC 2 cut(s) 203, 343
Eco47I GGWCC 4 cut(s) 13, 151, 287, 995
Eco57I CTGAAG 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 289, 372
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 203, 343
FaeI CATG 6 cut(s) 100, 279, 860, 887, 920, 1204
FalI AAGNNNNNCTT 2 cut(s) 1016, 1048
FaqI GGGAC 1 cut(s) 137
FatI CATG 6 cut(s) 96, 275, 856, 883, 916, 1200
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 355, 444, 687, 723, 768
FokI GGATG 2 cut(s) 1019, 1123
FriOI GRGCYC 2 cut(s) 203, 343
Fsp4HI GCNGC 5 cut(s) 355, 444, 687, 723, 768
FspBI CTAG 3 cut(s) 1046, 1080, 1266
GluI GCNGC 5 cut(s) 355, 444, 687, 723, 768
GsuI CTGGAG 1 cut(s) 852
HaeIII GGCC 1 cut(s) 1107
HapII CCGG 2 cut(s) 155, 1108
Hin1II CATG 6 cut(s) 100, 279, 860, 887, 920, 1204
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 2 cut(s) 8, 1100
HpaII CCGG 2 cut(s) 155, 1108
HphI GGTGA 1 cut(s) 959
Hpy166II GTNNAC 2 cut(s) 160, 895
Hpy188I TCNGA 7 cut(s) 123, 345, 429, 456, 943, 1016, 1141
Hpy188III TCNNGA 3 cut(s) 97, 831, 998
Hpy8I GTNNAC 2 cut(s) 160, 895
HpyAV CCTTC 3 cut(s) 342, 1011, 1253
HpyCH4III ACNGT 3 cut(s) 52, 538, 892
HpyCH4IV ACGT 2 cut(s) 350, 391
HpyCH4V TGCA 9 cut(s) 48, 79, 399, 415, 437, 482, 713, 788, 1145
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 560, 719
HpyF3I CTNAG 3 cut(s) 26, 942, 1138
HpySE526I ACGT 2 cut(s) 350, 391
Hsp92II CATG 6 cut(s) 100, 279, 860, 887, 920, 1204
Kzo9I GATC 4 cut(s) 293, 592, 835, 971
LmnI GCTCC 3 cut(s) 56, 206, 1167
Lsp1109I GCAGC 5 cut(s) 341, 430, 673, 709, 754
LweI GCATC 7 cut(s) 100, 147, 709, 747, 997, 1101, 1132
MaeI CTAG 3 cut(s) 1046, 1080, 1266
MaeII ACGT 2 cut(s) 350, 391
MaeIII GTNAC 3 cut(s) 448, 947, 1203
MalI GATC 4 cut(s) 295, 594, 837, 973
MboI GATC 4 cut(s) 293, 592, 835, 971
MboII GAAGA 6 cut(s) 703, 728, 930, 1068, 1146, 1238
MflI RGATCY 3 cut(s) 293, 592, 835
MhlI GDGCHC 2 cut(s) 203, 343
MluCI AATT 6 cut(s) 253, 490, 728, 736, 866, 1177
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 8 cut(s) 194, 372, 838, 937, 946, 1140, 1183, 1192
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 4 cut(s) 167, 311, 701, 869
MslI CAYNNNNRTG 3 cut(s) 146, 783, 921
MspI CCGG 2 cut(s) 155, 1108
MspR9I CCNGG 3 cut(s) 155, 291, 374
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 2 cut(s) 291, 374
MwoI GCNNNNNNNGC 3 cut(s) 443, 560, 719
NciI CCSGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 1195
NdeII GATC 4 cut(s) 293, 592, 835, 971
NlaIII CATG 6 cut(s) 100, 279, 860, 887, 920, 1204
NlaIV GGNNCC 4 cut(s) 15, 153, 202, 826
NmuCI GTSAC 2 cut(s) 947, 1203
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 1 cut(s) 1204
PagI TCATGA 1 cut(s) 96
PciI ACATGT 1 cut(s) 1200
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 2 cut(s) 8, 1100
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 5 cut(s) 356, 445, 688, 724, 769
Ppu21I YACGTR 1 cut(s) 392
PscI ACATGT 1 cut(s) 1200
PshBI ATTAAT 2 cut(s) 167, 701
PsiI TTATAA 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 289, 372
PspGI CCWGG 2 cut(s) 289, 372
PspN4I GGNNCC 4 cut(s) 15, 153, 202, 826
PspPI GGNCC 4 cut(s) 13, 151, 287, 995
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 3 cut(s) 293, 592, 835
RsaI GTAC 3 cut(s) 927, 987, 1084
RsaNI GTAC 3 cut(s) 926, 986, 1083
RseI CAYNNNNRTG 3 cut(s) 146, 783, 921
SaqAI TTAA 4 cut(s) 167, 311, 701, 869
SatI GCNGC 5 cut(s) 355, 444, 687, 723, 768
Sau3AI GATC 4 cut(s) 293, 592, 835, 971
Sau96I GGNCC 4 cut(s) 13, 151, 287, 995
ScrFI CCNGG 3 cut(s) 155, 291, 374
SduI GDGCHC 2 cut(s) 203, 343
SfaNI GCATC 7 cut(s) 100, 147, 709, 747, 997, 1101, 1132
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 4 cut(s) 13, 151, 287, 995
SmiMI CAYNNNNRTG 3 cut(s) 146, 783, 921
SnaBI TACGTA 1 cut(s) 392
Sse9I AATT 6 cut(s) 253, 490, 728, 736, 866, 1177
SsiI CCGC 3 cut(s) 5, 71, 197
SspI AATATT 1 cut(s) 820
SspMI CTAG 3 cut(s) 1046, 1080, 1266
StyD4I CCNGG 3 cut(s) 153, 289, 372
TaaI ACNGT 3 cut(s) 52, 538, 892
TaiI ACGT 2 cut(s) 353, 394
TaqI TCGA 3 cut(s) 548, 970, 1212
TasI AATT 6 cut(s) 253, 490, 728, 736, 866, 1177
TatI WGTACW 2 cut(s) 925, 1082
TfiI GAWTC 2 cut(s) 8, 1100
Tru1I TTAA 4 cut(s) 167, 311, 701, 869
Tru9I TTAA 4 cut(s) 167, 311, 701, 869
TscAI CASTG 2 cut(s) 55, 1194
TseFI GTSAC 2 cut(s) 947, 1203
TseI GCWGC 5 cut(s) 354, 443, 686, 722, 767
Tsp45I GTSAC 2 cut(s) 947, 1203
TspDTI ATGAA 6 cut(s) 113, 249, 616, 730, 1163, 1272
TspRI CASTG 2 cut(s) 55, 1194
VpaK11BI GGWCC 4 cut(s) 13, 151, 287, 995
VspI ATTAAT 2 cut(s) 167, 701
XapI RAATTY 3 cut(s) 490, 736, 1177
XceI RCATGY 1 cut(s) 1204
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 1046, 1080, 1266
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.