Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009384

Physical Location & Seq

Genomic Coordinates Forward (+)

27409037 .. 27413177

Gene Structure 4141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGCATCGGTCCCAATCTACCTGAGCATTGTCGCTTTTTTCTGCACTGTTGGAGCCATAGCTTTGGCCATTTCGCACATCTACAGGCACCTCATGAATTACACAGAACCTACTTATCAGAGATACATTGTCCGCATTATCTTTATGGTCCCAATATATGCATTGATGTCTTTCTTATCCCTTGTTTTACCTGGGAGCTCAATCTACTTTAATTCCATCAGGGAAGTTTATGAAGCGTGGGTCATTTATAATTTTCTGTCGCTGTGCTTGGCATGGGTTGGTGGCCCAGGATCCGTTGTCCTAAGTTTAAGTGGTAGGATTCTAAAGCCTTCGTGGGTTCTGATGACATGTTGCCTCCCTCCCATACCTCTTGATGGGCGCTTTATACGTAGGTGCAAGCAAGGCTGTTTGCAGTTTGTTATACTGAAGCCCATATTAGTTGCCGTTACACTCATACTTTATGCAAAAGGGAAATATGCAGATGGAAATTTCAGTCCAAATCAGTCGTACCTGTATCTCACTATTATCTATACAATCTCATACACGATGGCTCTTTATGCTTTGGCATTGTTTTATGTGGCTTGCAGAGATCTGCTTCAGCCATTCAATCCAGTTCCAAAGTTTATTATAATCAAATCTGTTGTTTTCCTCACTTATTGGCAGGGTGTGTTGGTTTTCCTTGCTGCCAAATCTGGATTAATAAAGAATGCAGAGGATGCTGCTCAATATCAAAATTTCATAATATGTGTTGAGATGCTAATTGCTGCTGTTGGTCATCTATATGCATTTCCCTACAAGGAGTATGCTGGTGCAAATATTGGCGAGCCTCGAGGTCTGACTGGAAGCCTTGCACATGCCTTAAAATTGAATGACTTTTACCATGATACAGTCCACCAGTTTGCCCCTACCTATCATGATTATGTACTCTACAACCATAGTGAGGGTGATGAGGGAAAGAGGAAGTATCGGTCACGCACCTTTGTGCCGACTGGCCCAGAGATGGATGCTGTCAGAAGGAACAAGCACATGTTTGGGAACAAGATAGATGACATACAGCTTTCCAGTCTCTCATCTTCTAGTTCAAGCACTCCCAATAACTCTGGCCCAGTCCCTGATTCTGCAAATTCAGATGCAATGAAGTCTTCCCTGCTTGTTGATACCTCAAATGCTTCATCAGTGCCATATGACATGTCACTTATTGACTTGGACTTGACCAGCTACCCCGCAAAGGTTCCTTCAGCAAATGGAGGTGGTACTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

422

Amino Acids

46.75

Weight (kDa)

8.72

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05940 AT5G26740 AT5G26740 AT5G26740
fragaria_vesca	FvH4_6g08800 FvH4_6g08800
malus_domestica	MD04G1183500.v1.1 MD12G1196900.v1.1
prunus_persica	Prupe.6G302000_v2.0.a1
pyrus_communis	pycom04g16200 pycom12g18320
rosa_chinensis	RchiOBHm_Chr3g0459061
rosa_laevigata	RLG00000025122
rosa_multiflora	Rmu_sc0004343.1_g000013 Rmu_sc0033812.1_g000006
rosa_roxburghii	Rroxscaffold_6G00420540
rosa_rugosa	Rorug03G0033300
rosa_samantha	Rh3AG091200 Rh3BG094200 Rh3CG094700 Rh3DG094700
rosa_wichuraiana	Rw3G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	252, 632
AbsI	CCTCGAGG	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	3 cut(s)	5, 136, 1227
AclWI	GGATC	2 cut(s)	288, 301
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	3 cut(s)	490, 736, 1126
AcuI	CTGAAG	3 cut(s)	449, 584, 1224
AfaI	GTAC	3 cut(s)	512, 927, 1258
AfiI	CCNNNNNNNGG	4 cut(s)	377, 943, 1003, 1231
AflIII	ACRYGT	3 cut(s)	350, 1029, 1191
AgsI	TTSAA	3 cut(s)	610, 871, 1086
AjnI	CCWGG	2 cut(s)	193, 289
AleI	CACNNNNGTG	1 cut(s)	983
AluBI	AGCT	4 cut(s)	65, 201, 1060, 1221
AluI	AGCT	4 cut(s)	65, 201, 1060, 1221
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	1073
AlwI	GGATC	2 cut(s)	288, 301
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	4 cut(s)	69, 286, 994, 1105
ApeKI	GCWGC	3 cut(s)	686, 722, 767
ApoI	RAATTY	3 cut(s)	490, 736, 1126
AseI	ATTAAT	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	5 cut(s)	13, 151, 287, 995, 1106
AsuHPI	GGTGA	1 cut(s)	959
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	13, 151
BalI	TGGCCA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	1137
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	673, 709, 754
BccI	CCATC	5 cut(s)	227, 371, 479, 544, 997
BceAI	ACGGC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	195, 291
BcoDI	GTCTC	1 cut(s)	1073
BfaI	CTAG	2 cut(s)	1080, 1260
BfmI	CTRYAG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	385
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	4 cut(s)	6, 687, 723, 768
BlsI	GCNGC	4 cut(s)	7, 688, 724, 769
Bme1390I	CCNGG	2 cut(s)	195, 291
Bme18I	GGWCC	2 cut(s)	13, 151
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	5 cut(s)	13, 151, 287, 995, 1106
BmiI	GGNNCC	6 cut(s)	15, 58, 92, 153, 295, 1236
BmrFI	CCNGG	2 cut(s)	195, 291
BmrI	ACTGGG	1 cut(s)	1103
BmsI	GCATC	5 cut(s)	17, 709, 747, 997, 1123
BmuI	ACTGGG	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	1137
Bpu10I	CCTNAGC	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	194, 289
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 943, 1003, 1231
Bse1I	ACTGG	6 cut(s)	614, 847, 898, 997, 1065, 1109
Bse3DI	GCAATG	1 cut(s)	1143
BseBI	CCWGG	2 cut(s)	195, 291
BseDI	CCNNGG	2 cut(s)	194, 289
BseGI	GGATG	2 cut(s)	724, 1012
BseLI	CCNNNNNNNGG	4 cut(s)	377, 943, 1003, 1231
BseMI	GCAATG	1 cut(s)	1143
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	6 cut(s)	614, 847, 898, 997, 1065, 1109
BseXI	GCAGC	3 cut(s)	673, 709, 754
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	71, 288, 996, 1107
BshNI	GGYRCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	831
BslFI	GGGAC	2 cut(s)	137, 1097
BslI	CCNNNNNNNGG	4 cut(s)	377, 943, 1003, 1231
BsmAI	GTCTC	1 cut(s)	1073
BsmFI	GGGAC	2 cut(s)	137, 1097
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	4 cut(s)	71, 288, 996, 1107
BsoBI	CYCGRG	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	293, 592
BspACI	CCGC	3 cut(s)	5, 136, 1227
BspANI	GGCC	4 cut(s)	71, 288, 996, 1107
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	2 cut(s)	96, 916
BspLI	GGNNCC	6 cut(s)	15, 58, 92, 153, 295, 1236
BspPI	GGATC	2 cut(s)	288, 301
BspT107I	GGYRCC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	1143
BsrI	ACTGG	6 cut(s)	614, 847, 898, 997, 1065, 1109
BssECI	CCNNGG	2 cut(s)	194, 289
BssMI	GATC	2 cut(s)	293, 592
Bst2UI	CCWGG	2 cut(s)	195, 291
Bst4CI	ACNGT	2 cut(s)	52, 892
BstAPI	GCANNNNNTGC	1 cut(s)	719
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	401, 586, 827
BstDEI	CTNAG	2 cut(s)	26, 305
BstF5I	GGATG	2 cut(s)	724, 1012
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	296, 595
BstMAI	GTCTC	1 cut(s)	1073
BstMBI	GATC	2 cut(s)	293, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	405, 560, 719
BstNI	CCWGG	2 cut(s)	195, 291
BstNSI	RCATGY	4 cut(s)	354, 860, 1033, 1195
BstSCI	CCNGG	2 cut(s)	193, 289
BstSFI	CTRYAG	1 cut(s)	85
BstSNI	TACGTA	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	673, 709, 754
BstV2I	GAAGAC	1 cut(s)	1137
BstX2I	RGATCY	2 cut(s)	293, 592
BstXI	CCANNNNNNTGG	1 cut(s)	67
BstYI	RGATCY	2 cut(s)	293, 592
BsuRI	GGCC	4 cut(s)	71, 288, 996, 1107
BtsCI	GGATG	2 cut(s)	724, 1012
BtsIMutI	CAGTG	2 cut(s)	48, 1185
Cac8I	GCNNGC	3 cut(s)	401, 586, 827
CaiI	CAGNNNCTG	1 cut(s)	1115
CciI	TCATGA	2 cut(s)	96, 916
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	5 cut(s)	13, 151, 287, 995, 1106
Csp6I	GTAC	3 cut(s)	511, 926, 1257
CviAII	CATG	8 cut(s)	97, 276, 351, 857, 884, 917, 1030, 1192
CviQI	GTAC	3 cut(s)	511, 926, 1257
DdeI	CTNAG	2 cut(s)	26, 305
DpnI	GATC	2 cut(s)	295, 594
DpnII	GATC	2 cut(s)	293, 592
EaeI	YGGCCR	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	201
Eco105I	TACGTA	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	13, 151
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	3 cut(s)	449, 584, 1224
Eco88I	CYCGRG	1 cut(s)	831
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	193, 289
EcoT22I	ATGCAT	2 cut(s)	166, 790
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	8 cut(s)	100, 279, 354, 860, 887, 920, 1033, 1195
FaqI	GGGAC	2 cut(s)	137, 1097
FatI	CATG	8 cut(s)	96, 275, 350, 856, 883, 916, 1029, 1191
FauI	CCCGC	1 cut(s)	1234
FauNDI	CATATG	1 cut(s)	1186
Fnu4HI	GCNGC	4 cut(s)	6, 687, 723, 768
FokI	GGATG	2 cut(s)	731, 1019
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	6, 687, 723, 768
FspBI	CTAG	2 cut(s)	1080, 1260
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	4 cut(s)	6, 687, 723, 768
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	71, 288, 996, 1107
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	8 cut(s)	100, 279, 354, 860, 887, 920, 1033, 1195
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	322, 1118
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188I	TCNGA	5 cut(s)	123, 345, 840, 1016, 1132
Hpy188III	TCNNGA	4 cut(s)	97, 374, 696, 917
Hpy8I	GTNNAC	1 cut(s)	895
HpyAV	CCTTC	3 cut(s)	342, 1011, 1248
HpyCH4III	ACNGT	2 cut(s)	52, 892
HpyCH4IV	ACGT	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	405, 560, 719
HpyF3I	CTNAG	2 cut(s)	26, 305
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	8 cut(s)	100, 279, 354, 860, 887, 920, 1033, 1195
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	293, 592
LmnI	GCTCC	2 cut(s)	56, 198
Lsp1109I	GCAGC	3 cut(s)	673, 709, 754
LweI	GCATC	5 cut(s)	17, 709, 747, 997, 1123
MaeI	CTAG	2 cut(s)	1080, 1260
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	3 cut(s)	448, 972, 1194
MalI	GATC	2 cut(s)	295, 594
MboI	GATC	2 cut(s)	293, 592
MboII	GAAGA	2 cut(s)	1068, 1137
MflI	RGATCY	2 cut(s)	293, 592
MhlI	GDGCHC	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	8 cut(s)	100, 214, 253, 490, 736, 762, 866, 1126
MluNI	TGGCCA	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	34
Mox20I	TGGCCA	1 cut(s)	71
Mph1103I	ATGCAT	2 cut(s)	166, 790
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	4 cut(s)	213, 311, 701, 863
MslI	CAYNNNNRTG	3 cut(s)	783, 921, 983
Msp20I	TGGCCA	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	195, 291
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	2 cut(s)	195, 291
MwoI	GCNNNNNNNGC	3 cut(s)	405, 560, 719
NdeI	CATATG	1 cut(s)	1186
NdeII	GATC	2 cut(s)	293, 592
NlaIII	CATG	8 cut(s)	100, 279, 354, 860, 887, 920, 1033, 1195
NlaIV	GGNNCC	6 cut(s)	15, 58, 92, 153, 295, 1236
NmuCI	GTSAC	2 cut(s)	972, 1194
NsiI	ATGCAT	2 cut(s)	166, 790
NspI	RCATGY	4 cut(s)	354, 860, 1033, 1195
OliI	CACNNNNGTG	1 cut(s)	983
PaeR7I	CTCGAG	1 cut(s)	831
PagI	TCATGA	2 cut(s)	96, 916
PciI	ACATGT	3 cut(s)	350, 1029, 1191
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	322, 1118
PkrI	GCNGC	4 cut(s)	7, 688, 724, 769
Ppu21I	YACGTR	1 cut(s)	392
PscI	ACATGT	3 cut(s)	350, 1029, 1191
PshBI	ATTAAT	1 cut(s)	701
PsiI	TTATAA	2 cut(s)	252, 632
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	193, 289
PspGI	CCWGG	2 cut(s)	193, 289
PspN4I	GGNNCC	6 cut(s)	15, 58, 92, 153, 295, 1236
PspPI	GGNCC	5 cut(s)	13, 151, 287, 995, 1106
PspXI	VCTCGAGB	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	2 cut(s)	293, 592
RsaI	GTAC	3 cut(s)	512, 927, 1258
RsaNI	GTAC	3 cut(s)	511, 926, 1257
RseI	CAYNNNNRTG	3 cut(s)	783, 921, 983
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	213, 311, 701, 863
SatI	GCNGC	4 cut(s)	6, 687, 723, 768
Sau3AI	GATC	2 cut(s)	293, 592
Sau96I	GGNCC	5 cut(s)	13, 151, 287, 995, 1106
ScrFI	CCNGG	2 cut(s)	195, 291
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	5 cut(s)	17, 709, 747, 997, 1123
SfcI	CTRYAG	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	831
SinI	GGWCC	2 cut(s)	13, 151
SlaI	CTCGAG	1 cut(s)	831
SmiMI	CAYNNNNRTG	3 cut(s)	783, 921, 983
SmlI	CTYRAG	1 cut(s)	831
SmoI	CTYRAG	1 cut(s)	831
SnaBI	TACGTA	1 cut(s)	392
Sse9I	AATT	8 cut(s)	100, 214, 253, 490, 736, 762, 866, 1126
SsiI	CCGC	3 cut(s)	5, 136, 1227
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	2 cut(s)	1080, 1260
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	193, 289
TaaI	ACNGT	2 cut(s)	52, 892
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	832
TaqII	GACCGA	1 cut(s)	960
TasI	AATT	8 cut(s)	100, 214, 253, 490, 736, 762, 866, 1126
TatI	WGTACW	1 cut(s)	925
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	322, 1118
Tru1I	TTAA	4 cut(s)	213, 311, 701, 863
Tru9I	TTAA	4 cut(s)	213, 311, 701, 863
TscAI	CASTG	2 cut(s)	55, 1185
TseFI	GTSAC	2 cut(s)	972, 1194
TseI	GCWGC	3 cut(s)	686, 722, 767
Tsp45I	GTSAC	2 cut(s)	972, 1194
TspDTI	ATGAA	5 cut(s)	113, 249, 730, 1154, 1164
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	55, 1185
VpaK11BI	GGWCC	2 cut(s)	13, 151
VspI	ATTAAT	1 cut(s)	701
XapI	RAATTY	3 cut(s)	490, 736, 1126
XceI	RCATGY	4 cut(s)	354, 860, 1033, 1195
XhoI	CTCGAG	1 cut(s)	831
XspI	CTAG	2 cut(s)	1080, 1260
Zsp2I	ATGCAT	2 cut(s)	166, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.