AT3G06590

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009174
Physical Location & Seq
Reverse (-)
2052693 .. 2055666
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06590.3

Sequence Viewer

Length: 666 bp
ATGGCGTCTCTGATCTCAGATATTGAACCGCCGACGAGTACTACTTCAGATCTCGTTCGGAGAAAGAAGAGATCCTCTGCTTCATCCGCCGCATCGTCTCGTTCAAGCGCATCTTCCGTCTCCGGTGAGATTCACGCGCGATGGCGATCGGAGAAGCAACAACGGATCTACTCAGCCAAACTGTTCCAAGCGCTCCAACAAGTCCGCCTCAACTCTTCCGCCTCAACATCATCATCTCCAACGGCTCAGAAACGAGGAAAGGCCGTCCGTGAAGCCGCCGATCGAGCTCTTGCCGTTTCCGCTCGGGGAAGAACACTCTGGAGCAGAGCGATCTTAGCTAATCGGATCAAACTGAAATTTCGTAAACAGAGACGTCCTCGAGCTACGATGGCGATTCCGGCCATGACTACGGTGGTTAGTAGCAGCAGCAACAGATCGAGAAAACGGAGAGTGTCGGTGTTGAGATTGAATAAGAAGAGTATACCGGATGTTAACCGGAAAGTACGTGTTCTAGGCCGGTTAGTTCCCGGTTGCGGTAAACAATCCGTACCGGTGATTCTAGAAGAAGCAACTGATTATATTCAGGCTCTGGAGATGCAAGTGAGAGCCATGAACTCTTTAGTTCAGCTTCTCTCCTCCTACGGCTCAGCTCCTCCACCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.26

Weight (kDa)

11.83

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 115 9e-14 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 481
AccII CGCG 2 cut(s) 137, 139
AciI CCGC 8 cut(s) 29, 87, 90, 205, 219, 276, 300, 534
AclWI GGATC 3 cut(s) 66, 173, 353
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 5, 373
AfaI GTAC 3 cut(s) 40, 504, 549
AfeI AGCGCT 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 1 cut(s) 505
AgeI ACCGGT 1 cut(s) 550
AgsI TTSAA 3 cut(s) 26, 105, 469
AluBI AGCT 5 cut(s) 287, 338, 383, 628, 650
AluI AGCT 5 cut(s) 287, 338, 383, 628, 650
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 4 cut(s) 12, 102, 124, 364
AlwI GGATC 3 cut(s) 66, 173, 353
AlwNI CAGNNNCTG 1 cut(s) 589
Ama87I CYCGRG 2 cut(s) 303, 378
Aor51HI AGCGCT 1 cut(s) 192
AoxI GGCC 3 cut(s) 261, 399, 514
ApeKI GCWGC 2 cut(s) 423, 426
ApoI RAATTY 1 cut(s) 356
AsiGI ACCGGT 1 cut(s) 550
AspLEI GCGC 3 cut(s) 110, 139, 193
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 2 cut(s) 137, 565
AvaI CYCGRG 2 cut(s) 303, 378
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 435, 438
BccI CCATC 2 cut(s) 135, 382
BceAI ACGGC 4 cut(s) 248, 258, 278, 658
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 12, 102, 124, 364
BfaI CTAG 2 cut(s) 512, 560
BfoI RGCGCY 1 cut(s) 194
BglII AGATCT 1 cut(s) 49
BisI GCNGC 4 cut(s) 90, 276, 424, 427
BlpI GCTNAGC 1 cut(s) 646
BlsI GCNGC 4 cut(s) 91, 277, 425, 428
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 528
BmeT110I CYCGRG 2 cut(s) 303, 378
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 3 cut(s) 101, 119, 585
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpmI CTGGAG 2 cut(s) 340, 611
Bpu1102I GCTNAGC 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 145
BsaHI GRCGYC 2 cut(s) 5, 373
BsaWI WCCGGW 4 cut(s) 122, 484, 495, 550
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 2 cut(s) 516, 550
Bse8I GATNNNNATC 1 cut(s) 145
BseGI GGATG 2 cut(s) 83, 493
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 4 cut(s) 30, 186, 260, 660
BseRI GAGGAG 2 cut(s) 625, 642
BseXI GCAGC 2 cut(s) 435, 438
Bsh1236I CGCG 2 cut(s) 137, 139
Bsh1285I CGRYCG 2 cut(s) 149, 283
BshFI GGCC 3 cut(s) 263, 401, 516
BshTI ACCGGT 1 cut(s) 550
BsiEI CGRYCG 2 cut(s) 149, 283
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 2 cut(s) 303, 378
BsiSI CCGG 7 cut(s) 123, 398, 485, 496, 517, 528, 551
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 4 cut(s) 12, 102, 124, 364
BsmBI CGTCTC 4 cut(s) 12, 102, 124, 364
BsnI GGCC 3 cut(s) 263, 401, 516
BsoBI CYCGRG 2 cut(s) 303, 378
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
Bsp1720I GCTNAGC 1 cut(s) 646
BspACI CCGC 8 cut(s) 29, 87, 90, 205, 219, 276, 300, 534
BspANI GGCC 3 cut(s) 263, 401, 516
BspCNI CTCAG 4 cut(s) 29, 185, 259, 659
BspFNI CGCG 2 cut(s) 137, 139
BspPI GGATC 3 cut(s) 66, 173, 353
BsrBI CCGCTC 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 516, 550
BssAI RCCGGY 2 cut(s) 516, 550
BssMI GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
BssNAI GTATAC 1 cut(s) 482
BssNI GRCGYC 2 cut(s) 5, 373
Bst1107I GTATAC 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 183, 412
Bst6I CTCTTC 3 cut(s) 62, 220, 470
BstACI GRCGYC 2 cut(s) 5, 373
BstBAI YACGTR 1 cut(s) 506
BstDEI CTNAG 5 cut(s) 16, 172, 246, 334, 646
BstF5I GGATG 2 cut(s) 83, 493
BstFNI CGCG 2 cut(s) 137, 139
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 110, 139, 193
BstKTI GATC 9 cut(s) 15, 52, 74, 149, 168, 283, 333, 348, 437
BstMAI GTCTC 4 cut(s) 12, 102, 124, 364
BstMBI GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
BstMCI CGRYCG 2 cut(s) 149, 283
BstMWI GCNNNNNNNGC 6 cut(s) 86, 284, 299, 335, 389, 398
BstSCI CCNGG 1 cut(s) 526
BstUI CGCG 2 cut(s) 137, 139
BstV1I GCAGC 2 cut(s) 435, 438
BstX2I RGATCY 3 cut(s) 49, 71, 165
BstYI RGATCY 3 cut(s) 49, 71, 165
BstZ17I GTATAC 1 cut(s) 482
BsuRI GGCC 3 cut(s) 263, 401, 516
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 2 cut(s) 83, 493
CaiI CAGNNNCTG 1 cut(s) 589
CfoI GCGC 3 cut(s) 110, 139, 193
Cfr10I RCCGGY 2 cut(s) 516, 550
Csp6I GTAC 3 cut(s) 39, 503, 548
CspAI ACCGGT 1 cut(s) 550
CviAII CATG 2 cut(s) 403, 610
CviQI GTAC 3 cut(s) 39, 503, 548
DdeI CTNAG 5 cut(s) 16, 172, 246, 334, 646
DpnI GATC 9 cut(s) 14, 51, 73, 148, 167, 282, 332, 347, 436
DpnII GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 62, 220, 470
EarI CTCTTC 3 cut(s) 62, 220, 470
EciI GGCGGA 3 cut(s) 76, 194, 208
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco47III AGCGCT 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 2 cut(s) 303, 378
EcoICRI GAGCTC 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 289
Esp3I CGTCTC 4 cut(s) 12, 102, 124, 364
FaeI CATG 2 cut(s) 406, 613
FaiI YATR 4 cut(s) 404, 482, 579, 611
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FatI CATG 2 cut(s) 402, 609
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 90, 276, 424, 427
FokI GGATG 2 cut(s) 70, 500
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 4 cut(s) 90, 276, 424, 427
FspBI CTAG 2 cut(s) 512, 560
GlaI GCGC 3 cut(s) 109, 138, 192
GluI GCNGC 4 cut(s) 90, 276, 424, 427
GsuI CTGGAG 2 cut(s) 340, 611
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 3 cut(s) 263, 401, 516
HapII CCGG 7 cut(s) 123, 398, 485, 496, 517, 528, 551
HhaI GCGC 3 cut(s) 110, 139, 193
Hin1I GRCGYC 2 cut(s) 5, 373
Hin1II CATG 2 cut(s) 406, 613
Hin6I GCGC 3 cut(s) 108, 137, 191
HinP1I GCGC 3 cut(s) 108, 137, 191
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 3 cut(s) 130, 394, 556
HpaI GTTAAC 1 cut(s) 493
HpaII CCGG 7 cut(s) 123, 398, 485, 496, 517, 528, 551
HphI GGTGA 2 cut(s) 137, 565
Hpy166II GTNNAC 4 cut(s) 365, 482, 493, 539
Hpy188I TCNGA 7 cut(s) 12, 19, 49, 60, 151, 249, 345
Hpy188III TCNNGA 4 cut(s) 319, 438, 560, 590
Hpy8I GTNNAC 4 cut(s) 365, 482, 493, 539
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 183, 412
HpyCH4IV ACGT 2 cut(s) 373, 505
HpyCH4V TGCA 1 cut(s) 598
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 284, 299, 335, 389, 398
HpyF3I CTNAG 5 cut(s) 16, 172, 246, 334, 646
HpySE526I ACGT 2 cut(s) 373, 505
Hsp92I GRCGYC 2 cut(s) 5, 373
Hsp92II CATG 2 cut(s) 406, 613
HspAI GCGC 3 cut(s) 108, 137, 191
KspAI GTTAAC 1 cut(s) 493
Kzo9I GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
LmnI GCTCC 3 cut(s) 198, 321, 655
Lsp1109I GCAGC 2 cut(s) 435, 438
LweI GCATC 3 cut(s) 101, 119, 585
MaeI CTAG 2 cut(s) 512, 560
MaeII ACGT 2 cut(s) 373, 505
MalI GATC 9 cut(s) 14, 51, 73, 148, 167, 282, 332, 347, 436
MbiI CCGCTC 1 cut(s) 302
MboI GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
MboII GAAGA 6 cut(s) 79, 105, 207, 321, 487, 575
MflI RGATCY 3 cut(s) 49, 71, 165
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 220, 263
MnlI CCTC 7 cut(s) 85, 218, 232, 248, 387, 646, 663
MseI TTAA 1 cut(s) 492
MspI CCGG 7 cut(s) 123, 398, 485, 496, 517, 528, 551
MspR9I CCNGG 1 cut(s) 528
MvnI CGCG 2 cut(s) 137, 139
MwoI GCNNNNNNNGC 6 cut(s) 86, 284, 299, 335, 389, 398
NciI CCSGG 1 cut(s) 528
NdeII GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
NlaIII CATG 2 cut(s) 406, 613
PaeR7I CTCGAG 1 cut(s) 378
PfeI GAWTC 3 cut(s) 130, 394, 556
PinAI ACCGGT 1 cut(s) 550
PkrI GCNGC 4 cut(s) 91, 277, 425, 428
Ple19I CGATCG 2 cut(s) 149, 283
Ppu21I YACGTR 1 cut(s) 506
Psp124BI GAGCTC 1 cut(s) 289
PspXI VCTCGAGB 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 589
PsuI RGATCY 3 cut(s) 49, 71, 165
PvuI CGATCG 2 cut(s) 149, 283
RsaI GTAC 3 cut(s) 40, 504, 549
RsaNI GTAC 3 cut(s) 39, 503, 548
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 4 cut(s) 90, 276, 424, 427
Sau3AI GATC 9 cut(s) 12, 49, 71, 146, 165, 280, 330, 345, 434
ScaI AGTACT 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 528
SduI GDGCHC 1 cut(s) 289
SetI ASST 7 cut(s) 289, 340, 376, 385, 508, 630, 652
SfaNI GCATC 3 cut(s) 101, 119, 585
Sfr274I CTCGAG 1 cut(s) 378
SlaI CTCGAG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 1 cut(s) 356
SsiI CCGC 8 cut(s) 29, 87, 90, 205, 219, 276, 300, 534
SspMI CTAG 2 cut(s) 512, 560
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 183, 412
TaiI ACGT 2 cut(s) 376, 508
TaqI TCGA 3 cut(s) 283, 379, 437
TasI AATT 1 cut(s) 356
TatI WGTACW 1 cut(s) 38
TauI GCSGC 2 cut(s) 92, 278
TfiI GAWTC 3 cut(s) 130, 394, 556
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TseI GCWGC 2 cut(s) 423, 426
TspDTI ATGAA 2 cut(s) 72, 626
TspGWI ACGGA 5 cut(s) 106, 178, 257, 460, 535
XapI RAATTY 1 cut(s) 356
XbaI TCTAGA 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 2 cut(s) 512, 560
ZraI GACGTC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.