Rh4DG265500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009174
Physical Location & Seq
Forward (+)
48455513 .. 48456196
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG265500.1

Sequence Viewer

Length: 684 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACGTCGGACCGGCCTCGCGATTCATCTAGAATACAACGCAAGAAGAAGAAGAAGCTGCAGGCCAAACAGGAGCACCACCTTCTCGTTCAACACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCTCCGCTGAGCCCAGCAGCCAGTCGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCCTCGAAGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGGCGGCGGCCGCGGCCGCCGGGACGGGCCGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGGAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCCGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGTTCTTTGCCGCCGCCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

24.9

Weight (kDa)

11.73

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 121 6.7e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 1 cut(s) 647
AccII CGCG 2 cut(s) 51, 407
AclWI GGATC 1 cut(s) 664
AcoI YGGCCR 5 cut(s) 303, 309, 402, 408, 505
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 2 cut(s) 5, 648
AfiI CCNNNNNNNGG 9 cut(s) 266, 294, 301, 307, 318, 321, 460, 525, 606
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 122, 430, 460
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 183, 195, 300
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 88, 364, 619
AluI AGCT 3 cut(s) 88, 364, 619
Alw21I GWGCWC 2 cut(s) 108, 504
Alw26I GTCTC 2 cut(s) 205, 634
AlwI GGATC 1 cut(s) 664
AlwNI CAGNNNCTG 2 cut(s) 190, 538
ApeKI GCWGC 8 cut(s) 88, 157, 219, 376, 388, 532, 538, 619
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 190, 650
AspS9I GGNCC 9 cut(s) 40, 273, 298, 324, 339, 421, 493, 514, 592
AsuC2I CCSGG 5 cut(s) 296, 338, 415, 497, 519
AsuHPI GGTGA 2 cut(s) 340, 556
AvaII GGWCC 6 cut(s) 40, 298, 324, 493, 514, 592
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 1 cut(s) 216
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 108, 504
BbvI GCAGC 8 cut(s) 75, 169, 231, 388, 400, 525, 544, 606
BceAI ACGGC 2 cut(s) 260, 290
BciT130I CCWGG 3 cut(s) 185, 197, 302
BcnI CCSGG 5 cut(s) 296, 338, 415, 497, 519
BcoDI GTCTC 2 cut(s) 205, 634
BfaI CTAG 2 cut(s) 60, 551
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 2 cut(s) 191, 651
BfuAI ACCTGC 1 cut(s) 580
BlpI GCTNAGC 1 cut(s) 210
Bme1390I CCNGG 8 cut(s) 185, 197, 296, 302, 338, 415, 497, 519
Bme18I GGWCC 6 cut(s) 40, 298, 324, 493, 514, 592
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 9 cut(s) 40, 273, 298, 324, 339, 421, 493, 514, 592
BmiI GGNNCC 5 cut(s) 299, 326, 335, 516, 649
BmrFI CCNGG 8 cut(s) 185, 197, 296, 302, 338, 415, 497, 519
BmrI ACTGGG 1 cut(s) 672
BmsI GCATC 1 cut(s) 576
BmuI ACTGGG 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 167, 352
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 2 cut(s) 344, 350
BpuMI CCSGG 5 cut(s) 296, 338, 415, 497, 519
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 5, 648
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 306, 315, 405, 517
BsaWI WCCGGW 2 cut(s) 453, 632
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 235, 265
Bsc4I CCNNNNNNNGG 9 cut(s) 266, 294, 301, 307, 318, 321, 460, 525, 606
Bse118I RCCGGY 8 cut(s) 42, 354, 423, 475, 507, 541, 606, 650
Bse1I ACTGG 2 cut(s) 223, 678
BseBI CCWGG 3 cut(s) 185, 197, 302
BseDI CCNNGG 4 cut(s) 306, 315, 405, 517
BseLI CCNNNNNNNGG 9 cut(s) 266, 294, 301, 307, 318, 321, 460, 525, 606
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 223, 678
BseRI GAGGAG 5 cut(s) 160, 193, 243, 246, 249
BseX3I CGGCCG 3 cut(s) 402, 408, 505
BseXI GCAGC 8 cut(s) 75, 169, 231, 388, 400, 525, 544, 606
BseYI CCCAGC 2 cut(s) 153, 215
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 2 cut(s) 51, 407
Bsh1285I CGRYCG 4 cut(s) 295, 405, 411, 508
BshNI GGYRCC 1 cut(s) 647
BsiEI CGRYCG 4 cut(s) 295, 405, 411, 508
BsiHKAI GWGCWC 2 cut(s) 108, 504
BslFI GGGAC 2 cut(s) 430, 500
BslI CCNNNNNNNGG 9 cut(s) 266, 294, 301, 307, 318, 321, 460, 525, 606
BsmAI GTCTC 2 cut(s) 205, 634
BsmFI GGGAC 2 cut(s) 430, 500
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 3 cut(s) 108, 216, 504
Bsp143I GATC 2 cut(s) 15, 656
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp68I TCGCGA 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 2 cut(s) 51, 407
BspLI GGNNCC 5 cut(s) 299, 326, 335, 516, 649
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 1 cut(s) 664
BspT107I GGYRCC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 8 cut(s) 42, 354, 423, 475, 507, 541, 606, 650
BsrI ACTGG 2 cut(s) 223, 678
BssAI RCCGGY 8 cut(s) 42, 354, 423, 475, 507, 541, 606, 650
BssECI CCNNGG 4 cut(s) 306, 315, 405, 517
BssMI GATC 2 cut(s) 15, 656
BssNI GRCGYC 2 cut(s) 5, 648
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 185, 197, 302
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 2 cut(s) 5, 648
BstAPI GCANNNNNTGC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 5 cut(s) 93, 473, 477, 608, 652
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 2 cut(s) 306, 405
BstFNI CGCG 2 cut(s) 51, 407
BstH2I RGCGCY 2 cut(s) 191, 651
BstHHI GCGC 2 cut(s) 190, 650
BstKTI GATC 2 cut(s) 18, 659
BstMAI GTCTC 2 cut(s) 205, 634
BstMBI GATC 2 cut(s) 15, 656
BstMCI CGRYCG 4 cut(s) 295, 405, 411, 508
BstMWI GCNNNNNNNGC 9 cut(s) 187, 311, 385, 404, 407, 410, 481, 538, 616
BstNI CCWGG 3 cut(s) 185, 197, 302
BstSCI CCNGG 8 cut(s) 183, 195, 294, 300, 336, 413, 495, 517
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 2 cut(s) 51, 407
BstV1I GCAGC 8 cut(s) 75, 169, 231, 388, 400, 525, 544, 606
BstV2I GAAGAC 1 cut(s) 228
BstZI CGGCCG 3 cut(s) 402, 408, 505
BtgI CCRYGG 2 cut(s) 306, 405
BtrI CACGTC 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 5 cut(s) 93, 473, 477, 608, 652
CaiI CAGNNNCTG 2 cut(s) 190, 538
CciNI GCGGCCGC 2 cut(s) 402, 408
CfoI GCGC 2 cut(s) 190, 650
Cfr10I RCCGGY 8 cut(s) 42, 354, 423, 475, 507, 541, 606, 650
Cfr13I GGNCC 9 cut(s) 40, 273, 298, 324, 339, 421, 493, 514, 592
Cfr42I CCGCGG 1 cut(s) 408
CpoI CGGWCCG 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 195
CspI CGGWCCG 1 cut(s) 40
CviAII CATG 1 cut(s) 601
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 649
DpnI GATC 2 cut(s) 17, 658
DpnII GATC 2 cut(s) 15, 656
EaeI YGGCCR 5 cut(s) 303, 309, 402, 408, 505
EagI CGGCCG 3 cut(s) 402, 408, 505
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 669
EclXI CGGCCG 3 cut(s) 402, 408, 505
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 6 cut(s) 40, 298, 324, 493, 514, 592
Eco52I CGGCCG 3 cut(s) 402, 408, 505
Eco72I CACGTG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 298, 324
EcoRII CCWGG 3 cut(s) 183, 195, 300
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 1 cut(s) 604
FaiI YATR 2 cut(s) 570, 602
FaqI GGGAC 2 cut(s) 430, 500
FatI CATG 1 cut(s) 600
FauI CCCGC 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 2 cut(s) 60, 551
GlaI GCGC 2 cut(s) 189, 649
GsaI CCCAGC 2 cut(s) 157, 219
GsuI CTGGAG 2 cut(s) 167, 352
HaeII RGCGCY 2 cut(s) 191, 651
HhaI GCGC 2 cut(s) 190, 650
Hin1I GRCGYC 2 cut(s) 5, 648
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 2 cut(s) 188, 648
HinP1I GCGC 2 cut(s) 188, 648
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 22, 53, 547
HphI GGTGA 2 cut(s) 340, 556
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 40, 148, 596
Hpy188III TCNNGA 4 cut(s) 19, 50, 60, 551
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 3 cut(s) 40, 232, 235
HpyAV CCTTC 5 cut(s) 122, 258, 454, 460, 484
HpyCH4IV ACGT 2 cut(s) 35, 245
HpyCH4V TGCA 3 cut(s) 91, 484, 589
HpyF10VI GCNNNNNNNGC 9 cut(s) 187, 311, 385, 404, 407, 410, 481, 538, 616
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 35, 245
Hsp92I GRCGYC 2 cut(s) 5, 648
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 2 cut(s) 188, 648
KasI GGCGCC 1 cut(s) 647
KroI GCCGGC 3 cut(s) 475, 606, 650
KroNI GCCGGC 3 cut(s) 477, 608, 652
KspI CCGCGG 1 cut(s) 408
Kzo9I GATC 2 cut(s) 15, 656
LmnI GCTCC 3 cut(s) 103, 186, 333
Lsp1109I GCAGC 8 cut(s) 75, 169, 231, 388, 400, 525, 544, 606
LweI GCATC 1 cut(s) 576
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 551
MaeII ACGT 2 cut(s) 35, 245
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 17, 658
MboI GATC 2 cut(s) 15, 656
MboII GAAGA 6 cut(s) 88, 91, 94, 228, 442, 566
MhlI GDGCHC 3 cut(s) 108, 216, 504
MluCI AATT 2 cut(s) 162, 176
Mly113I GGCGCC 1 cut(s) 648
MmeI TCCRAC 2 cut(s) 18, 561
MreI CGCCGGCG 1 cut(s) 650
MroNI GCCGGC 3 cut(s) 475, 606, 650
MspA1I CMGCKG 5 cut(s) 209, 330, 407, 538, 619
MspR9I CCNGG 8 cut(s) 185, 197, 296, 302, 338, 415, 497, 519
MvaI CCWGG 3 cut(s) 185, 197, 302
MvnI CGCG 2 cut(s) 51, 407
MwoI GCNNNNNNNGC 9 cut(s) 187, 311, 385, 404, 407, 410, 481, 538, 616
NaeI GCCGGC 3 cut(s) 477, 608, 652
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 5 cut(s) 296, 338, 415, 497, 519
NdeII GATC 2 cut(s) 15, 656
NgoMIV GCCGGC 3 cut(s) 475, 606, 650
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 5 cut(s) 299, 326, 335, 516, 649
NmeAIII GCCGAG 1 cut(s) 483
NotI GCGGCCGC 2 cut(s) 402, 408
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PdiI GCCGGC 3 cut(s) 477, 608, 652
PfeI GAWTC 3 cut(s) 22, 53, 547
PflFI GACNNNGTC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 651
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 298, 324
Psp5II RGGWCCY 2 cut(s) 298, 324
Psp6I CCWGG 3 cut(s) 183, 195, 300
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 2 cut(s) 153, 215
PspGI CCWGG 3 cut(s) 183, 195, 300
PspN4I GGNNCC 5 cut(s) 299, 326, 335, 516, 649
PspPI GGNCC 9 cut(s) 40, 273, 298, 324, 339, 421, 493, 514, 592
PspPPI RGGWCCY 2 cut(s) 298, 324
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 2 cut(s) 190, 538
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 619
RruI TCGCGA 1 cut(s) 51
Rsr2I CGGWCCG 1 cut(s) 40
RsrII CGGWCCG 1 cut(s) 40
SacII CCGCGG 1 cut(s) 408
Sau3AI GATC 2 cut(s) 15, 656
Sau96I GGNCC 9 cut(s) 40, 273, 298, 324, 339, 421, 493, 514, 592
ScrFI CCNGG 8 cut(s) 185, 197, 296, 302, 338, 415, 497, 519
SduI GDGCHC 3 cut(s) 108, 216, 504
SetI ASST 9 cut(s) 38, 90, 114, 201, 248, 366, 495, 594, 621
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 576
SfcI CTRYAG 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 649
Sfr303I CCGCGG 1 cut(s) 408
SgrAI CRCCGGYG 1 cut(s) 650
SgrBI CCGCGG 1 cut(s) 408
SinI GGWCC 6 cut(s) 40, 298, 324, 493, 514, 592
SmlI CTYRAG 2 cut(s) 359, 365
SmoI CTYRAG 2 cut(s) 359, 365
Sse9I AATT 2 cut(s) 162, 176
SspDI GGCGCC 1 cut(s) 647
SspMI CTAG 2 cut(s) 60, 551
StyD4I CCNGG 8 cut(s) 183, 195, 294, 300, 336, 413, 495, 517
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 2 cut(s) 38, 248
TaqI TCGA 2 cut(s) 20, 262
TasI AATT 2 cut(s) 162, 176
TfiI GAWTC 3 cut(s) 22, 53, 547
TscAI CASTG 1 cut(s) 18
TseI GCWGC 8 cut(s) 88, 157, 219, 376, 388, 532, 538, 619
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 6 cut(s) 40, 298, 324, 493, 514, 592
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 59, 550
XspI CTAG 2 cut(s) 60, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.