MD16G1151400.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009174
Physical Location & Seq
Reverse (-)
11944083 .. 11944739
657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1151400.v1.1.491

Sequence Viewer

Length: 657 bp
ATGGCATCGACTCTGATTTCGAATCCCATAGCCACCTCCGATCGAGCTCGGGATTCTTCTAGAAGGAAAAAGAAGAAGAAAATCCAGCCCAAGCAGGACCACCTCCACCACCAAGAACCCGCCCACAGCCACGCCAAGTGGAAGTCCGAGGCCCAGCAGCACCTCTACTCCTCCAAGCTCCTCCACGCCCTCACCCAAGTCTCCATTAACTCGGCACCCGACTCCTCCACCGCCGCCGCCAACTCCTCCGCTTCCTCTTCCACCCCACGACGCGGCCGAGCCGTTCGCGAGGCCGCCGACAGAGTTCTCGCCGTCGCAGCTAAGGGTAAGACCCGCTGGAGCCGTGCCATTCTCACCAGCCGCCTTAAAATCAAGTTCCGTCAGCATAAACGGCAGAGATCCGCCGCGGCGTCGGGGAGCGGGTCGACCCGGCCCAAGAAACCCAAGTTCAGTGTCCACCGGCTGAAAGGGAAGGGCTTGCCGGCCGTGCAGAAGAAAGTACGGGTTCTGGGGCGGTTGGTTCCCGGTTGCCGGAAACAGCCGTTGCCGGTGATTCTAGATGAAGCGACTGATTACATCGCGGCTCTGGAGATGCAGGTCCGAGCCATGAGCCGGCTCACTCAGCTGCTCTCCGGTTCAACTTCCGGCTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.86

Weight (kDa)

11.63

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 122 6.4e-10 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 420
AccI GTMKAC 1 cut(s) 425
AccII CGCG 4 cut(s) 273, 288, 407, 581
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 2 cut(s) 274, 483
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 1 cut(s) 501
AfiI CCNNNNNNNGG 3 cut(s) 272, 531, 612
AgsI TTSAA 1 cut(s) 639
AluBI AGCT 4 cut(s) 47, 178, 320, 625
AluI AGCT 4 cut(s) 47, 178, 320, 625
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 205
AlwI GGATC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 5 cut(s) 150, 274, 291, 431, 483
ApeKI GCWGC 3 cut(s) 157, 317, 625
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspS9I GGNCC 4 cut(s) 97, 151, 432, 598
AsuC2I CCSGG 2 cut(s) 430, 525
AsuHPI GGTGA 3 cut(s) 184, 346, 562
AsuII TTCGAA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 97, 598
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 3 cut(s) 169, 329, 612
BceAI ACGGC 6 cut(s) 266, 296, 327, 407, 470, 526
BcnI CCSGG 2 cut(s) 430, 525
BcoDI GTCTC 1 cut(s) 205
BfaI CTAG 2 cut(s) 60, 557
BfuAI ACCTGC 1 cut(s) 586
Bme1390I CCNGG 2 cut(s) 430, 525
Bme18I GGWCC 2 cut(s) 97, 598
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 97, 151, 432, 598
BmiI GGNNCC 4 cut(s) 216, 341, 522, 649
BmrFI CCNGG 2 cut(s) 430, 525
BmsI GCATC 2 cut(s) 14, 582
BpmI CTGGAG 2 cut(s) 358, 608
Bpu10I CCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 2 cut(s) 430, 525
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 147, 405
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 531, 612
Bse118I RCCGGY 4 cut(s) 459, 481, 547, 612
BseDI CCNNGG 2 cut(s) 147, 405
BseLI CCNNNNNNNGG 3 cut(s) 272, 531, 612
BseMII CTCAG 1 cut(s) 635
BseRI GAGGAG 4 cut(s) 160, 170, 214, 235
BseX3I CGGCCG 2 cut(s) 274, 483
BseXI GCAGC 3 cut(s) 169, 329, 612
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 4 cut(s) 273, 288, 407, 581
Bsh1285I CGRYCG 3 cut(s) 43, 277, 486
BshFI GGCC 5 cut(s) 152, 276, 293, 433, 485
BshNI GGYRCC 1 cut(s) 214
BsiEI CGRYCG 3 cut(s) 43, 277, 486
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 9 cut(s) 430, 460, 482, 525, 532, 548, 613, 633, 645
BslI CCNNNNNNNGG 3 cut(s) 272, 531, 612
BsmAI GTCTC 1 cut(s) 205
BsnI GGCC 5 cut(s) 152, 276, 293, 433, 485
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 40, 398
Bsp68I TCGCGA 1 cut(s) 288
BspANI GGCC 5 cut(s) 152, 276, 293, 433, 485
BspCNI CTCAG 1 cut(s) 634
BspFNI CGCG 4 cut(s) 273, 288, 407, 581
BspLI GGNNCC 4 cut(s) 216, 341, 522, 649
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 420
BsrFI RCCGGY 4 cut(s) 459, 481, 547, 612
BssAI RCCGGY 4 cut(s) 459, 481, 547, 612
BssECI CCNNGG 2 cut(s) 147, 405
BssMI GATC 2 cut(s) 40, 398
BssNI GRCGYC 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 479, 483, 614
BstDEI CTNAG 2 cut(s) 321, 621
BstDSI CCRYGG 1 cut(s) 405
BstFNI CGCG 4 cut(s) 273, 288, 407, 581
BstKTI GATC 2 cut(s) 43, 401
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 2 cut(s) 40, 398
BstMCI CGRYCG 3 cut(s) 43, 277, 486
BstMWI GCNNNNNNNGC 4 cut(s) 317, 391, 487, 622
BstSCI CCNGG 2 cut(s) 428, 523
BstUI CGCG 4 cut(s) 273, 288, 407, 581
BstV1I GCAGC 3 cut(s) 169, 329, 612
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
BstZI CGGCCG 2 cut(s) 274, 483
BsuRI GGCC 5 cut(s) 152, 276, 293, 433, 485
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 457
BtuMI TCGCGA 1 cut(s) 288
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 479, 483, 614
Cfr10I RCCGGY 4 cut(s) 459, 481, 547, 612
Cfr13I GGNCC 4 cut(s) 97, 151, 432, 598
Cfr42I CCGCGG 1 cut(s) 408
CseI GACGC 2 cut(s) 279, 399
Csp6I GTAC 1 cut(s) 500
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 500
DdeI CTNAG 2 cut(s) 321, 621
DpnI GATC 2 cut(s) 42, 400
DpnII GATC 2 cut(s) 40, 398
EaeI YGGCCR 2 cut(s) 274, 483
EagI CGGCCG 2 cut(s) 274, 483
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
EciI GGCGGA 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 47
EclXI CGGCCG 2 cut(s) 274, 483
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 97, 598
Eco52I CGGCCG 2 cut(s) 274, 483
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 610
FaiI YATR 3 cut(s) 29, 387, 608
FatI CATG 1 cut(s) 606
FauI CCCGC 3 cut(s) 127, 341, 413
FblI GTMKAC 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 2 cut(s) 60, 557
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 2 cut(s) 358, 608
HaeIII GGCC 5 cut(s) 152, 276, 293, 433, 485
HapII CCGG 9 cut(s) 430, 460, 482, 525, 532, 548, 613, 633, 645
HgaI GACGC 2 cut(s) 279, 399
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 1 cut(s) 610
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 5 cut(s) 10, 22, 53, 221, 553
HpaII CCGG 9 cut(s) 430, 460, 482, 525, 532, 548, 613, 633, 645
HphI GGTGA 3 cut(s) 184, 346, 562
Hpy166II GTNNAC 2 cut(s) 426, 457
Hpy188I TCNGA 4 cut(s) 15, 40, 148, 602
Hpy188III TCNNGA 5 cut(s) 50, 60, 287, 557, 587
Hpy8I GTNNAC 2 cut(s) 426, 457
Hpy99I CGWCG 3 cut(s) 273, 317, 415
HpyAV CCTTC 2 cut(s) 57, 466
HpyCH4V TGCA 2 cut(s) 490, 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 391, 487, 622
HpyF3I CTNAG 2 cut(s) 321, 621
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 1 cut(s) 610
KroI GCCGGC 2 cut(s) 481, 612
KroNI GCCGGC 2 cut(s) 483, 614
KspI CCGCGG 1 cut(s) 408
Kzo9I GATC 2 cut(s) 40, 398
LmnI GCTCC 4 cut(s) 183, 339, 417, 653
Lsp1109I GCAGC 3 cut(s) 169, 329, 612
LweI GCATC 2 cut(s) 14, 582
MaeI CTAG 2 cut(s) 60, 557
MalI GATC 2 cut(s) 42, 400
MbiI CCGCTC 1 cut(s) 420
MboI GATC 2 cut(s) 40, 398
MboII GAAGA 5 cut(s) 48, 85, 88, 249, 505
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 49
MlyI GAGTC 2 cut(s) 4, 215
MroNI GCCGGC 2 cut(s) 481, 612
MseI TTAA 2 cut(s) 207, 366
MspA1I CMGCKG 3 cut(s) 336, 407, 625
MspI CCGG 9 cut(s) 430, 460, 482, 525, 532, 548, 613, 633, 645
MspR9I CCNGG 2 cut(s) 430, 525
MvnI CGCG 4 cut(s) 273, 288, 407, 581
MwoI GCNNNNNNNGC 4 cut(s) 317, 391, 487, 622
NaeI GCCGGC 2 cut(s) 483, 614
NciI CCSGG 2 cut(s) 430, 525
NdeII GATC 2 cut(s) 40, 398
NgoMIV GCCGGC 2 cut(s) 481, 612
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 4 cut(s) 216, 341, 522, 649
NmeAIII GCCGAG 2 cut(s) 191, 302
NruI TCGCGA 1 cut(s) 288
NspV TTCGAA 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PdiI GCCGGC 2 cut(s) 483, 614
PfeI GAWTC 3 cut(s) 22, 53, 553
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 4, 215
PpsI GAGTC 2 cut(s) 4, 215
Psp124BI GAGCTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 4 cut(s) 216, 341, 522, 649
PspPI GGNCC 4 cut(s) 97, 151, 432, 598
PsuI RGATCY 1 cut(s) 398
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 625
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 1 cut(s) 501
RsaNI GTAC 1 cut(s) 500
SacI GAGCTC 1 cut(s) 49
SacII CCGCGG 1 cut(s) 408
SalI GTCGAC 1 cut(s) 424
SaqAI TTAA 2 cut(s) 207, 366
Sau3AI GATC 2 cut(s) 40, 398
Sau96I GGNCC 4 cut(s) 97, 151, 432, 598
SchI GAGTC 2 cut(s) 4, 215
ScrFI CCNGG 2 cut(s) 430, 525
SduI GDGCHC 1 cut(s) 49
SetI ASST 8 cut(s) 38, 49, 105, 165, 180, 322, 600, 627
SfaNI GCATC 2 cut(s) 14, 582
Sfr303I CCGCGG 1 cut(s) 408
SfuI TTCGAA 1 cut(s) 20
SgrBI CCGCGG 1 cut(s) 408
SinI GGWCC 2 cut(s) 97, 598
SspMI CTAG 2 cut(s) 60, 557
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 428, 523
TaqI TCGA 4 cut(s) 8, 20, 43, 425
TauI GCSGC 8 cut(s) 236, 239, 276, 296, 363, 407, 410, 584
TfiI GAWTC 3 cut(s) 22, 53, 553
Tru1I TTAA 2 cut(s) 207, 366
Tru9I TTAA 2 cut(s) 207, 366
TscAI CASTG 1 cut(s) 457
TseI GCWGC 3 cut(s) 157, 317, 625
TspDTI ATGAA 1 cut(s) 576
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 97, 598
XbaI TCTAGA 2 cut(s) 59, 556
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 2 cut(s) 60, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.