Rw6G028810

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009174
Physical Location & Seq
Reverse (-)
52874322 .. 52874876
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028810.1

Sequence Viewer

Length: 555 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACGTCGGAGCGGCCTCGCGATTCATCTAGAATACAACGCAAGAAGAAGAAGAAGCTGCAGGCCAAACAGGAGCACCACCTTCTCGTTCAACACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCTCCGCTGAGCCCAGGAGCCAGTCGTCTTCCTCCACGTGTCCTCCTCCTCCCCCTCCTCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGTGTGGGGGAGACCGCAAGACGAGAAGCGCAAGTCGGCGGTCGCTGGAGAAGCACAAGTCGGCGGTCGCTTCGCGTCTCTCTCTGGCCGTAGTGGCAGACGTCAGCCATGTGGGGAGCTCGGGCCGAGCTGGCAGCAAACTTGACTGGCTAGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

11.75

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 121 1.4e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 2 cut(s) 51, 469
AciI CCGC 8 cut(s) 43, 207, 288, 312, 328, 409, 433, 458
AcoI YGGCCR 3 cut(s) 303, 309, 480
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 240
AcyI GRCGYC 2 cut(s) 5, 495
AfiI CCNNNNNNNGG 6 cut(s) 266, 294, 301, 307, 318, 321
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 1 cut(s) 122
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 4 cut(s) 183, 195, 215, 300
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 4 cut(s) 88, 364, 513, 524
AluI AGCT 4 cut(s) 88, 364, 513, 524
Alw21I GWGCWC 2 cut(s) 108, 515
Alw26I GTCTC 3 cut(s) 205, 399, 476
AlwNI CAGNNNCTG 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 514
AoxI GGCC 9 cut(s) 44, 93, 273, 285, 303, 309, 339, 480, 517
ApeKI GCWGC 5 cut(s) 88, 157, 376, 388, 528
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 190, 425
AspS9I GGNCC 5 cut(s) 273, 298, 324, 339, 517
AsuC2I CCSGG 2 cut(s) 296, 338
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 514
AvaII GGWCC 2 cut(s) 298, 324
BanII GRGCYC 2 cut(s) 216, 515
BbrPI CACGTG 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 108, 515
BbvI GCAGC 5 cut(s) 75, 169, 388, 400, 540
BceAI ACGGC 3 cut(s) 260, 290, 467
BciT130I CCWGG 4 cut(s) 185, 197, 217, 302
BcnI CCSGG 2 cut(s) 296, 338
BcoDI GTCTC 3 cut(s) 205, 399, 476
BfaI CTAG 2 cut(s) 60, 545
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 191
BglI GCCNNNNNGGC 2 cut(s) 488, 525
BisI GCNGC 8 cut(s) 44, 89, 158, 288, 312, 377, 389, 529
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 8 cut(s) 45, 90, 159, 289, 313, 378, 390, 530
Bme1390I CCNGG 6 cut(s) 185, 197, 217, 296, 302, 338
Bme18I GGWCC 2 cut(s) 298, 324
BmeT110I CYCGRG 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 5 cut(s) 273, 298, 324, 339, 517
BmiI GGNNCC 4 cut(s) 221, 299, 326, 335
BmrFI CCNGG 6 cut(s) 185, 197, 217, 296, 302, 338
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 3 cut(s) 167, 352, 461
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 2 cut(s) 344, 350
BpuMI CCSGG 2 cut(s) 296, 338
BsaAI YACGTR 1 cut(s) 240
BsaHI GRCGYC 2 cut(s) 5, 495
BsaI GGTCTC 2 cut(s) 205, 399
BsaJI CCNNGG 3 cut(s) 215, 306, 315
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 229, 259
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 294, 301, 307, 318, 321
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 223, 545
BseBI CCWGG 4 cut(s) 185, 197, 217, 302
BseDI CCNNGG 3 cut(s) 215, 306, 315
BseLI CCNNNNNNNGG 6 cut(s) 266, 294, 301, 307, 318, 321
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 223, 545
BseRI GAGGAG 5 cut(s) 160, 193, 237, 240, 249
BseXI GCAGC 5 cut(s) 75, 169, 388, 400, 540
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 51, 469
Bsh1285I CGRYCG 3 cut(s) 295, 437, 462
BshFI GGCC 9 cut(s) 46, 95, 275, 287, 305, 311, 341, 482, 519
BsiEI CGRYCG 3 cut(s) 295, 437, 462
BsiHKAI GWGCWC 2 cut(s) 108, 515
BsiHKCI CYCGRG 1 cut(s) 514
BsiSI CCGG 4 cut(s) 295, 337, 355, 373
BslI CCNNNNNNNGG 6 cut(s) 266, 294, 301, 307, 318, 321
BsmAI GTCTC 3 cut(s) 205, 399, 476
BsmBI CGTCTC 1 cut(s) 476
BsnI GGCC 9 cut(s) 46, 95, 275, 287, 305, 311, 341, 482, 519
Bso31I GGTCTC 2 cut(s) 205, 399
BsoBI CYCGRG 1 cut(s) 514
Bsp1286I GDGCHC 3 cut(s) 108, 216, 515
Bsp143I GATC 1 cut(s) 15
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 8 cut(s) 43, 207, 288, 312, 328, 409, 433, 458
BspANI GGCC 9 cut(s) 46, 95, 275, 287, 305, 311, 341, 482, 519
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 2 cut(s) 51, 469
BspLI GGNNCC 4 cut(s) 221, 299, 326, 335
BspMAI CTGCAG 1 cut(s) 93
BspTNI GGTCTC 2 cut(s) 205, 399
BsrBI CCGCTC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 2 cut(s) 223, 545
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 3 cut(s) 215, 306, 315
BssMI GATC 1 cut(s) 15
BssNI GRCGYC 2 cut(s) 5, 495
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 4 cut(s) 185, 197, 217, 302
BstACI GRCGYC 2 cut(s) 5, 495
BstBAI YACGTR 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 93, 526
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 2 cut(s) 51, 469
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 2 cut(s) 190, 425
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 3 cut(s) 205, 399, 476
BstMBI GATC 1 cut(s) 15
BstMCI CGRYCG 3 cut(s) 295, 437, 462
BstMWI GCNNNNNNNGC 6 cut(s) 187, 311, 385, 445, 488, 525
BstNI CCWGG 4 cut(s) 185, 197, 217, 302
BstSCI CCNGG 6 cut(s) 183, 195, 215, 294, 300, 336
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 2 cut(s) 51, 469
BstV1I GCAGC 5 cut(s) 75, 169, 388, 400, 540
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 9 cut(s) 46, 95, 275, 287, 305, 311, 341, 482, 519
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 93, 526
CaiI CAGNNNCTG 1 cut(s) 190
CfoI GCGC 2 cut(s) 190, 425
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 5 cut(s) 273, 298, 324, 339, 517
CseI GACGC 1 cut(s) 458
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 503
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EaeI YGGCCR 3 cut(s) 303, 309, 480
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 216, 515
Eco31I GGTCTC 2 cut(s) 205, 399
Eco47I GGWCC 2 cut(s) 298, 324
Eco53kI GAGCTC 1 cut(s) 513
Eco72I CACGTG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 513
EcoO109I RGGNCCY 2 cut(s) 298, 324
EcoRII CCWGG 4 cut(s) 183, 195, 215, 300
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 216, 515
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 1 cut(s) 506
FaiI YATR 1 cut(s) 504
FatI CATG 1 cut(s) 502
FauI CCCGC 1 cut(s) 335
Fnu4HI GCNGC 8 cut(s) 44, 89, 158, 288, 312, 377, 389, 529
FriOI GRGCYC 2 cut(s) 216, 515
Fsp4HI GCNGC 8 cut(s) 44, 89, 158, 288, 312, 377, 389, 529
FspBI CTAG 2 cut(s) 60, 545
GlaI GCGC 2 cut(s) 189, 424
GluI GCNGC 8 cut(s) 44, 89, 158, 288, 312, 377, 389, 529
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 3 cut(s) 167, 352, 461
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 9 cut(s) 46, 95, 275, 287, 305, 311, 341, 482, 519
HapII CCGG 4 cut(s) 295, 337, 355, 373
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 190, 425
Hin1I GRCGYC 2 cut(s) 5, 495
Hin1II CATG 1 cut(s) 506
Hin6I GCGC 2 cut(s) 188, 423
HinP1I GCGC 2 cut(s) 188, 423
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 22, 53
HpaII CCGG 4 cut(s) 295, 337, 355, 373
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 40, 148
Hpy188III TCNNGA 3 cut(s) 19, 50, 60
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 40, 267
HpyAV CCTTC 1 cut(s) 122
HpyCH4IV ACGT 3 cut(s) 35, 239, 495
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 311, 385, 445, 488, 525
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 3 cut(s) 35, 239, 495
Hsp92I GRCGYC 2 cut(s) 5, 495
Hsp92II CATG 1 cut(s) 506
HspAI GCGC 2 cut(s) 188, 423
Kzo9I GATC 1 cut(s) 15
LmnI GCTCC 6 cut(s) 40, 103, 186, 219, 333, 510
Lsp1109I GCAGC 5 cut(s) 75, 169, 388, 400, 540
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 545
MaeII ACGT 3 cut(s) 35, 239, 495
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 43
MboI GATC 1 cut(s) 15
MboII GAAGA 4 cut(s) 88, 91, 94, 222
MhlI GDGCHC 3 cut(s) 108, 216, 515
MluCI AATT 2 cut(s) 162, 176
MmeI TCCRAC 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 209, 330
MspI CCGG 4 cut(s) 295, 337, 355, 373
MspR9I CCNGG 6 cut(s) 185, 197, 217, 296, 302, 338
MvaI CCWGG 4 cut(s) 185, 197, 217, 302
MvnI CGCG 2 cut(s) 51, 469
MwoI GCNNNNNNNGC 6 cut(s) 187, 311, 385, 445, 488, 525
NciI CCSGG 2 cut(s) 296, 338
NdeII GATC 1 cut(s) 15
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 4 cut(s) 221, 299, 326, 335
NmeAIII GCCGAG 1 cut(s) 545
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PfeI GAWTC 2 cut(s) 22, 53
PflFI GACNNNGTC 2 cut(s) 267, 296
PkrI GCNGC 8 cut(s) 45, 90, 159, 289, 313, 378, 390, 530
PmaCI CACGTG 1 cut(s) 240
PmlI CACGTG 1 cut(s) 240
Ppu21I YACGTR 1 cut(s) 240
PpuMI RGGWCCY 2 cut(s) 298, 324
Psp124BI GAGCTC 1 cut(s) 515
Psp5II RGGWCCY 2 cut(s) 298, 324
Psp6I CCWGG 4 cut(s) 183, 195, 215, 300
PspCI CACGTG 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 4 cut(s) 183, 195, 215, 300
PspN4I GGNNCC 4 cut(s) 221, 299, 326, 335
PspPI GGNCC 5 cut(s) 273, 298, 324, 339, 517
PspPPI RGGWCCY 2 cut(s) 298, 324
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 1 cut(s) 190
PsyI GACNNNGTC 2 cut(s) 267, 296
RruI TCGCGA 1 cut(s) 51
SacI GAGCTC 1 cut(s) 515
SatI GCNGC 8 cut(s) 44, 89, 158, 288, 312, 377, 389, 529
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 5 cut(s) 273, 298, 324, 339, 517
ScrFI CCNGG 6 cut(s) 185, 197, 217, 296, 302, 338
SduI GDGCHC 3 cut(s) 108, 216, 515
SexAI ACCWGGT 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 89
SinI GGWCC 2 cut(s) 298, 324
SmlI CTYRAG 2 cut(s) 359, 365
SmoI CTYRAG 2 cut(s) 359, 365
Sse9I AATT 2 cut(s) 162, 176
SsiI CCGC 8 cut(s) 43, 207, 288, 312, 328, 409, 433, 458
SspMI CTAG 2 cut(s) 60, 545
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 6 cut(s) 183, 195, 215, 294, 300, 336
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 3 cut(s) 38, 242, 498
TaqI TCGA 2 cut(s) 20, 262
TasI AATT 2 cut(s) 162, 176
TauI GCSGC 3 cut(s) 46, 290, 314
TfiI GAWTC 2 cut(s) 22, 53
TscAI CASTG 1 cut(s) 18
TseI GCWGC 5 cut(s) 88, 157, 376, 388, 528
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 2 cut(s) 267, 296
VpaK11BI GGWCC 2 cut(s) 298, 324
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 59
XspI CTAG 2 cut(s) 60, 545
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.