AT3G17100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009174
Physical Location & Seq
Forward (+)
5831136 .. 5832733
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17100.2

Sequence Viewer

Length: 693 bp
ATGGAGTCTATATCTCCGGTATCGAATCAGCTTCTTCAGCCGACGACGACGAGCTCTAATTCCGATCGCTCTCGTCGTAAGCGTAAGAAGAAATCATCGCCATCATCGGTTGAGAAATCTCCATCTCCGTCAATATCGTTGGAGAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCATGCTTTAAGAGAGCTACGAATCAGCCAACAACCATCTTCATCATCATCTTCTTCGATTCCACGTGGAGGTAGAGCCGTACGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGAGGTAAAACGTTATGGAGTCGAGCGATACTTTCAAAAGCTGTAAAACTCAAATTCAGGAAACACAAACGCCAGAGAATCTCTAATCCGACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAAACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGTGAAAGTACTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAATCATTACCGGTGGTTTTAGAAGAAACCACTGATTATATAGCTGCGATGGAGATGCAGATTCGTACTATGACTGCGATTCTCTCCGCCGTTAGTTCTTCTCCTCCGCCGCCAACGCCAGGTCACGAAGGGGGACAAACACACATGCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.31

Weight (kDa)

11.6

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 54 - 117 6.6e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 305, 624, 644, 647
AclI AACGTT 1 cut(s) 320
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 1 cut(s) 20
AcvI CACGTG 1 cut(s) 257
AfaI GTAC 4 cut(s) 273, 489, 507, 604
AfiI CCNNNNNNNGG 2 cut(s) 260, 656
AflII CTTAAG 1 cut(s) 464
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 1 cut(s) 345
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 8 cut(s) 31, 54, 187, 208, 293, 350, 485, 581
AluI AGCT 8 cut(s) 31, 54, 187, 208, 293, 350, 485, 581
Alw21I GWGCWC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 163, 581
ApoI RAATTY 1 cut(s) 362
AsiGI ACCGGT 1 cut(s) 547
AsuC2I CCSGG 2 cut(s) 421, 525
BanII GRGCYC 1 cut(s) 56
BbrPI CACGTG 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 175, 568
BccI CCATC 4 cut(s) 109, 130, 235, 580
BceAI ACGGC 3 cut(s) 254, 516, 611
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 1 cut(s) 657
BcnI CCSGG 2 cut(s) 421, 525
BfaI CTAG 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 464
BglII AGATCT 1 cut(s) 171
BisI GCNGC 4 cut(s) 164, 306, 582, 647
BlsI GCNGC 4 cut(s) 165, 307, 583, 648
BmcAI AGTACT 1 cut(s) 507
Bme1390I CCNGG 3 cut(s) 421, 525, 657
BmrFI CCNGG 3 cut(s) 421, 525, 657
BmsI GCATC 1 cut(s) 582
BpuMI CCSGG 2 cut(s) 421, 525
BsaAI YACGTR 2 cut(s) 257, 275
BsaWI WCCGGW 2 cut(s) 16, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 656
Bse118I RCCGGY 2 cut(s) 513, 547
BseBI CCWGG 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 260, 656
BseMII CTCAG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 2 cut(s) 175, 568
Bsh1285I CGRYCG 1 cut(s) 67
BshTI ACCGGT 1 cut(s) 547
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 5 cut(s) 17, 420, 514, 525, 548
BsiWI CGTACG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 260, 656
BsmFI GGGAC 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 3 cut(s) 64, 152, 171
BspACI CCGC 4 cut(s) 305, 624, 644, 647
BspCNI CTCAG 1 cut(s) 501
BspTI CTTAAG 1 cut(s) 464
BsrFI RCCGGY 2 cut(s) 513, 547
BsrGI TGTACA 1 cut(s) 487
BssAI RCCGGY 2 cut(s) 513, 547
BssMI GATC 3 cut(s) 64, 152, 171
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 454
BstAFI CTTAAG 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 487
BstBAI YACGTR 2 cut(s) 257, 275
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 509
BstKTI GATC 3 cut(s) 67, 155, 174
BstMBI GATC 3 cut(s) 64, 152, 171
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 4 cut(s) 37, 290, 305, 652
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 3 cut(s) 419, 523, 655
BstV1I GCAGC 2 cut(s) 175, 568
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtgZI GCGATG 2 cut(s) 81, 599
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 1 cut(s) 483
Cfr10I RCCGGY 2 cut(s) 513, 547
Csp6I GTAC 4 cut(s) 272, 488, 506, 603
CspAI ACCGGT 1 cut(s) 547
CviAII CATG 2 cut(s) 194, 682
CviQI GTAC 4 cut(s) 272, 488, 506, 603
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 66, 154, 173
DpnII GATC 3 cut(s) 64, 152, 171
EciI GGCGGA 2 cut(s) 613, 633
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 2 cut(s) 197, 685
FaiI YATR 7 cut(s) 11, 195, 325, 576, 578, 608, 683
FaqI GGGAC 1 cut(s) 684
FatI CATG 2 cut(s) 193, 681
Fnu4HI GCNGC 4 cut(s) 164, 306, 582, 647
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 4 cut(s) 164, 306, 582, 647
FspBI CTAG 1 cut(s) 188
GluI GCNGC 4 cut(s) 164, 306, 582, 647
HapII CCGG 5 cut(s) 17, 420, 514, 525, 548
Hin1II CATG 2 cut(s) 197, 685
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 8 cut(s) 5, 25, 213, 250, 328, 387, 598, 616
HpaI GTTAAC 1 cut(s) 414
HpaII CCGG 5 cut(s) 17, 420, 514, 525, 548
Hpy166II GTNNAC 2 cut(s) 414, 536
Hpy188I TCNGA 3 cut(s) 64, 157, 399
Hpy188III TCNNGA 2 cut(s) 367, 662
Hpy8I GTNNAC 2 cut(s) 414, 536
Hpy99I CGWCG 9 cut(s) 46, 49, 52, 78, 403, 406, 409, 412, 454
HpyAV CCTTC 1 cut(s) 659
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4IV ACGT 4 cut(s) 256, 274, 320, 410
HpyCH4V TGCA 1 cut(s) 595
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 290, 305, 652
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 4 cut(s) 256, 274, 320, 410
Hsp92II CATG 2 cut(s) 197, 685
KspAI GTTAAC 1 cut(s) 414
Kzo9I GATC 3 cut(s) 64, 152, 171
Lsp1109I GCAGC 2 cut(s) 175, 568
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 188
MaeII ACGT 4 cut(s) 256, 274, 320, 410
MaeIII GTNAC 1 cut(s) 659
MalI GATC 3 cut(s) 66, 154, 173
MboI GATC 3 cut(s) 64, 152, 171
MboII GAAGA 7 cut(s) 26, 100, 222, 234, 237, 572, 627
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 58, 362
MlyI GAGTC 2 cut(s) 14, 337
MmeI TCCRAC 2 cut(s) 120, 422
MnlI CCTC 5 cut(s) 254, 305, 453, 486, 651
MseI TTAA 3 cut(s) 200, 413, 465
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 5 cut(s) 17, 420, 514, 525, 548
MspR9I CCNGG 3 cut(s) 421, 525, 657
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 4 cut(s) 37, 290, 305, 652
NciI CCSGG 2 cut(s) 421, 525
NdeII GATC 3 cut(s) 64, 152, 171
NlaIII CATG 2 cut(s) 197, 685
NmuCI GTSAC 1 cut(s) 659
NspI RCATGY 1 cut(s) 685
PcsI WCGNNNNNNNCGW 3 cut(s) 73, 79, 407
PfeI GAWTC 6 cut(s) 25, 213, 250, 387, 598, 616
Pfl23II CGTACG 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 547
PkrI GCNGC 4 cut(s) 165, 307, 583, 648
Ple19I CGATCG 1 cut(s) 67
PleI GAGTC 2 cut(s) 13, 336
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 2 cut(s) 13, 336
Ppu21I YACGTR 2 cut(s) 257, 275
Psp124BI GAGCTC 1 cut(s) 56
Psp1406I AACGTT 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 655
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 655
PspLI CGTACG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 171
PvuI CGATCG 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 273, 489, 507, 604
RsaNI GTAC 4 cut(s) 272, 488, 506, 603
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 200, 413, 465
SatI GCNGC 4 cut(s) 164, 306, 582, 647
Sau3AI GATC 3 cut(s) 64, 152, 171
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 2 cut(s) 14, 337
ScrFI CCNGG 3 cut(s) 421, 525, 657
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 58, 362
SsiI CCGC 4 cut(s) 305, 624, 644, 647
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 419, 523, 655
TaaI ACNGT 1 cut(s) 454
TaiI ACGT 4 cut(s) 259, 277, 323, 413
TaqI TCGA 3 cut(s) 23, 248, 331
TasI AATT 2 cut(s) 58, 362
TatI WGTACW 2 cut(s) 487, 505
TauI GCSGC 2 cut(s) 308, 649
TfiI GAWTC 6 cut(s) 25, 213, 250, 387, 598, 616
Tru1I TTAA 3 cut(s) 200, 413, 465
Tru9I TTAA 3 cut(s) 200, 413, 465
TscAI CASTG 1 cut(s) 574
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 2 cut(s) 163, 581
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 182, 222
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 574
Vha464I CTTAAG 1 cut(s) 464
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 685
XspI CTAG 1 cut(s) 188
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.