Rh4CG281500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009174
Physical Location & Seq
Forward (+)
53914378 .. 53915055
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG281500.1

Sequence Viewer

Length: 678 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACCTCCGACCGGCCTCGCGATTCATCTAGAATACAACGCAAGAAGAAGAAGAAGCTGCAGGCCAAACAGGACCACCACCTTCTCGTTCAACACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCTCCGCTGAGCCCAGGAGCCAGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCCTCCTCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGCCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGGCGGCGGCCGCCGGGACCGGCCGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGGAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCAGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCCGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGTTCTTCGCCGCCGCCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.8

Weight (kDa)

11.78

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 121 1.5e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 574
AccB1I GGYRCC 1 cut(s) 641
AccII CGCG 1 cut(s) 51
AclWI GGATC 1 cut(s) 658
AcoI YGGCCR 5 cut(s) 303, 309, 402, 415, 499
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 243
AcyI GRCGYC 2 cut(s) 5, 642
AfiI CCNNNNNNNGG 9 cut(s) 42, 266, 294, 301, 307, 318, 321, 454, 600
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 3 cut(s) 122, 424, 454
AjnI CCWGG 5 cut(s) 183, 195, 215, 300, 511
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 88, 364, 613
AluI AGCT 3 cut(s) 88, 364, 613
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 2 cut(s) 205, 628
AlwI GGATC 1 cut(s) 658
AlwNI CAGNNNCTG 2 cut(s) 190, 532
ApeKI GCWGC 7 cut(s) 88, 157, 376, 388, 526, 532, 613
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 190, 644
AspS9I GGNCC 9 cut(s) 103, 273, 298, 324, 339, 411, 487, 508, 586
AsuC2I CCSGG 4 cut(s) 296, 338, 409, 491
AsuHPI GGTGA 2 cut(s) 340, 550
AvaII GGWCC 7 cut(s) 103, 298, 324, 411, 487, 508, 586
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 216
BbrPI CACGTG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 7 cut(s) 75, 169, 388, 400, 519, 538, 600
BceAI ACGGC 2 cut(s) 260, 290
BciT130I CCWGG 5 cut(s) 185, 197, 217, 302, 513
BcnI CCSGG 4 cut(s) 296, 338, 409, 491
BcoDI GTCTC 2 cut(s) 205, 628
BfaI CTAG 2 cut(s) 60, 545
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 2 cut(s) 191, 645
BfuAI ACCTGC 1 cut(s) 574
BlpI GCTNAGC 1 cut(s) 210
Bme1390I CCNGG 9 cut(s) 185, 197, 217, 296, 302, 338, 409, 491, 513
Bme18I GGWCC 7 cut(s) 103, 298, 324, 411, 487, 508, 586
BmgT120I GGNCC 9 cut(s) 103, 273, 298, 324, 339, 411, 487, 508, 586
BmiI GGNNCC 7 cut(s) 221, 299, 326, 335, 412, 510, 643
BmrFI CCNGG 9 cut(s) 185, 197, 217, 296, 302, 338, 409, 491, 513
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 1 cut(s) 570
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 2 cut(s) 167, 352
Bpu1102I GCTNAGC 1 cut(s) 210
BpuEI CTTGAG 2 cut(s) 344, 350
BpuMI CCSGG 4 cut(s) 296, 338, 409, 491
BsaAI YACGTR 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 5, 642
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 215, 306, 315, 511
BsaWI WCCGGW 2 cut(s) 447, 626
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 232, 262
Bsc4I CCNNNNNNNGG 9 cut(s) 42, 266, 294, 301, 307, 318, 321, 454, 600
Bse118I RCCGGY 8 cut(s) 42, 413, 417, 469, 501, 535, 600, 644
Bse1I ACTGG 2 cut(s) 223, 672
BseBI CCWGG 5 cut(s) 185, 197, 217, 302, 513
BseDI CCNNGG 4 cut(s) 215, 306, 315, 511
BseLI CCNNNNNNNGG 9 cut(s) 42, 266, 294, 301, 307, 318, 321, 454, 600
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 223, 672
BseRI GAGGAG 6 cut(s) 160, 193, 240, 243, 246, 249
BseX3I CGGCCG 3 cut(s) 402, 415, 499
BseXI GCAGC 7 cut(s) 75, 169, 388, 400, 519, 538, 600
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 5 cut(s) 43, 295, 405, 418, 502
BshNI GGYRCC 1 cut(s) 641
BsiEI CGRYCG 5 cut(s) 43, 295, 405, 418, 502
BsiHKAI GWGCWC 1 cut(s) 498
BslFI GGGAC 2 cut(s) 424, 494
BslI CCNNNNNNNGG 9 cut(s) 42, 266, 294, 301, 307, 318, 321, 454, 600
BsmAI GTCTC 2 cut(s) 205, 628
BsmFI GGGAC 2 cut(s) 424, 494
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 216, 498
Bsp143I GATC 2 cut(s) 15, 650
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp68I TCGCGA 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 221, 299, 326, 335, 412, 510, 643
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 574
BspPI GGATC 1 cut(s) 658
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 8 cut(s) 42, 413, 417, 469, 501, 535, 600, 644
BsrI ACTGG 2 cut(s) 223, 672
BssAI RCCGGY 8 cut(s) 42, 413, 417, 469, 501, 535, 600, 644
BssECI CCNNGG 4 cut(s) 215, 306, 315, 511
BssMI GATC 2 cut(s) 15, 650
BssNI GRCGYC 2 cut(s) 5, 642
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 5 cut(s) 185, 197, 217, 302, 513
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 2 cut(s) 5, 642
BstAPI GCANNNNNTGC 1 cut(s) 532
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 5 cut(s) 93, 467, 471, 602, 646
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 191, 645
BstHHI GCGC 2 cut(s) 190, 644
BstKTI GATC 2 cut(s) 18, 653
BstMAI GTCTC 2 cut(s) 205, 628
BstMBI GATC 2 cut(s) 15, 650
BstMCI CGRYCG 5 cut(s) 43, 295, 405, 418, 502
BstMWI GCNNNNNNNGC 7 cut(s) 187, 311, 385, 404, 475, 532, 610
BstNI CCWGG 5 cut(s) 185, 197, 217, 302, 513
BstSCI CCNGG 9 cut(s) 183, 195, 215, 294, 300, 336, 407, 489, 511
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 7 cut(s) 75, 169, 388, 400, 519, 538, 600
BstV2I GAAGAC 1 cut(s) 225
BstZI CGGCCG 3 cut(s) 402, 415, 499
BtgI CCRYGG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 5 cut(s) 93, 467, 471, 602, 646
CaiI CAGNNNCTG 2 cut(s) 190, 532
CciNI GCGGCCGC 1 cut(s) 402
CfoI GCGC 2 cut(s) 190, 644
Cfr10I RCCGGY 8 cut(s) 42, 413, 417, 469, 501, 535, 600, 644
Cfr13I GGNCC 9 cut(s) 103, 273, 298, 324, 339, 411, 487, 508, 586
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 595
DdeI CTNAG 1 cut(s) 210
DinI GGCGCC 1 cut(s) 643
DpnI GATC 2 cut(s) 17, 652
DpnII GATC 2 cut(s) 15, 650
EaeI YGGCCR 5 cut(s) 303, 309, 402, 415, 499
EagI CGGCCG 3 cut(s) 402, 415, 499
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 663
EclXI CGGCCG 3 cut(s) 402, 415, 499
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 7 cut(s) 103, 298, 324, 411, 487, 508, 586
Eco52I CGGCCG 3 cut(s) 402, 415, 499
Eco72I CACGTG 1 cut(s) 243
EcoO109I RGGNCCY 2 cut(s) 298, 324
EcoRII CCWGG 5 cut(s) 183, 195, 215, 300, 511
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 643
EheI GGCGCC 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 1 cut(s) 598
FaiI YATR 2 cut(s) 564, 596
FaqI GGGAC 2 cut(s) 424, 494
FatI CATG 1 cut(s) 594
FauI CCCGC 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 2 cut(s) 60, 545
GlaI GCGC 2 cut(s) 189, 643
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 2 cut(s) 167, 352
HaeII RGCGCY 2 cut(s) 191, 645
HhaI GCGC 2 cut(s) 190, 644
Hin1I GRCGYC 2 cut(s) 5, 642
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 2 cut(s) 188, 642
HinP1I GCGC 2 cut(s) 188, 642
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 22, 53, 541
HphI GGTGA 2 cut(s) 340, 550
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 40, 148, 590
Hpy188III TCNNGA 4 cut(s) 19, 50, 60, 545
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 232, 267
HpyAV CCTTC 4 cut(s) 122, 448, 454, 478
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 91, 478, 583
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 311, 385, 404, 475, 532, 610
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 2 cut(s) 5, 642
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 2 cut(s) 188, 642
KasI GGCGCC 1 cut(s) 641
KroI GCCGGC 3 cut(s) 469, 600, 644
KroNI GCCGGC 3 cut(s) 471, 602, 646
Kzo9I GATC 2 cut(s) 15, 650
LmnI GCTCC 3 cut(s) 186, 219, 333
Lsp1109I GCAGC 7 cut(s) 75, 169, 388, 400, 519, 538, 600
LweI GCATC 1 cut(s) 570
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 545
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 17, 652
MboI GATC 2 cut(s) 15, 650
MboII GAAGA 7 cut(s) 88, 91, 94, 225, 436, 560, 651
MhlI GDGCHC 2 cut(s) 216, 498
MluCI AATT 2 cut(s) 162, 176
Mly113I GGCGCC 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 63, 555
MreI CGCCGGCG 1 cut(s) 644
MroNI GCCGGC 3 cut(s) 469, 600, 644
MspA1I CMGCKG 4 cut(s) 209, 330, 532, 613
MspR9I CCNGG 9 cut(s) 185, 197, 217, 296, 302, 338, 409, 491, 513
MvaI CCWGG 5 cut(s) 185, 197, 217, 302, 513
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 7 cut(s) 187, 311, 385, 404, 475, 532, 610
NaeI GCCGGC 3 cut(s) 471, 602, 646
NarI GGCGCC 1 cut(s) 642
NciI CCSGG 4 cut(s) 296, 338, 409, 491
NdeII GATC 2 cut(s) 15, 650
NgoMIV GCCGGC 3 cut(s) 469, 600, 644
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 7 cut(s) 221, 299, 326, 335, 412, 510, 643
NmeAIII GCCGAG 1 cut(s) 477
NotI GCGGCCGC 1 cut(s) 402
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PdiI GCCGGC 3 cut(s) 471, 602, 646
PfeI GAWTC 3 cut(s) 22, 53, 541
PflFI GACNNNGTC 2 cut(s) 267, 296
PluTI GGCGCC 1 cut(s) 645
PmaCI CACGTG 1 cut(s) 243
PmlI CACGTG 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 243
PpuMI RGGWCCY 2 cut(s) 298, 324
Psp5II RGGWCCY 2 cut(s) 298, 324
Psp6I CCWGG 5 cut(s) 183, 195, 215, 300, 511
PspCI CACGTG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 5 cut(s) 183, 195, 215, 300, 511
PspN4I GGNNCC 7 cut(s) 221, 299, 326, 335, 412, 510, 643
PspPI GGNCC 9 cut(s) 103, 273, 298, 324, 339, 411, 487, 508, 586
PspPPI RGGWCCY 2 cut(s) 298, 324
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 2 cut(s) 190, 532
PsyI GACNNNGTC 2 cut(s) 267, 296
PvuII CAGCTG 1 cut(s) 613
RruI TCGCGA 1 cut(s) 51
Sau3AI GATC 2 cut(s) 15, 650
Sau96I GGNCC 9 cut(s) 103, 273, 298, 324, 339, 411, 487, 508, 586
ScrFI CCNGG 9 cut(s) 185, 197, 217, 296, 302, 338, 409, 491, 513
SduI GDGCHC 2 cut(s) 216, 498
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 643
SgrAI CRCCGGYG 1 cut(s) 644
SinI GGWCC 7 cut(s) 103, 298, 324, 411, 487, 508, 586
SmlI CTYRAG 2 cut(s) 359, 365
SmoI CTYRAG 2 cut(s) 359, 365
Sse9I AATT 2 cut(s) 162, 176
SspDI GGCGCC 1 cut(s) 641
SspMI CTAG 2 cut(s) 60, 545
StyD4I CCNGG 9 cut(s) 183, 195, 215, 294, 300, 336, 407, 489, 511
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 20, 262
TasI AATT 2 cut(s) 162, 176
TauI GCSGC 9 cut(s) 290, 314, 401, 404, 407, 532, 572, 667, 670
TfiI GAWTC 3 cut(s) 22, 53, 541
TscAI CASTG 1 cut(s) 18
TseI GCWGC 7 cut(s) 88, 157, 376, 388, 526, 532, 613
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 2 cut(s) 267, 296
VpaK11BI GGWCC 7 cut(s) 103, 298, 324, 411, 487, 508, 586
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 59, 544
XspI CTAG 2 cut(s) 60, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.