Rroxscaffold_5G00367770

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009174
Physical Location & Seq
Forward (+)
49627996 .. 49628676
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00367770.1

Sequence Viewer

Length: 681 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACCTCCGACCGGCCTCGCGATTCATCTAGAATACAACGCAAGAAGAAGAAGAAGCTGCAGGCCAAGCAGGACCACCACCTTCTCGTTCAACACTCCCAGACCAAATGGAAATCCGAAGCCCAGCAGCAAAGTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCGCCGTTGAGCCGAGGAGCCAGTCGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCCCCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCATCAGAGGGCGGCGGCGGCCACCGGGGCCGGCAGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGAAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCAGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGTTCTTTGCCGCCGCCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.88

Weight (kDa)

11.78

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 50 - 121 6.2e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 411, 577
AccB1I GGYRCC 1 cut(s) 644
AccII CGCG 1 cut(s) 51
AclWI GGATC 1 cut(s) 661
AcoI YGGCCR 4 cut(s) 303, 309, 405, 502
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 2 cut(s) 5, 645
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 122, 427, 457
AjnI CCWGG 3 cut(s) 183, 195, 300
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 88, 364, 616
AluI AGCT 3 cut(s) 88, 364, 616
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 2 cut(s) 205, 631
AlwI GGATC 1 cut(s) 661
AlwNI CAGNNNCTG 2 cut(s) 190, 535
ApeKI GCWGC 6 cut(s) 88, 157, 376, 529, 535, 616
AspLEI GCGC 2 cut(s) 190, 647
AspS9I GGNCC 8 cut(s) 103, 273, 298, 324, 339, 414, 490, 511
AsuC2I CCSGG 5 cut(s) 296, 338, 412, 494, 516
AsuHPI GGTGA 2 cut(s) 340, 553
AvaII GGWCC 5 cut(s) 103, 298, 324, 490, 511
BanI GGYRCC 1 cut(s) 644
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 6 cut(s) 75, 169, 388, 522, 541, 603
BceAI ACGGC 3 cut(s) 191, 260, 290
BciT130I CCWGG 3 cut(s) 185, 197, 302
BcnI CCSGG 5 cut(s) 296, 338, 412, 494, 516
BcoDI GTCTC 2 cut(s) 205, 631
BfaI CTAG 2 cut(s) 60, 548
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 2 cut(s) 191, 648
BfuAI ACCTGC 2 cut(s) 411, 577
BglI GCCNNNNNGGC 1 cut(s) 413
Bme1390I CCNGG 8 cut(s) 185, 197, 296, 302, 338, 412, 494, 516
Bme18I GGWCC 5 cut(s) 103, 298, 324, 490, 511
BmgT120I GGNCC 8 cut(s) 103, 273, 298, 324, 339, 414, 490, 511
BmiI GGNNCC 7 cut(s) 221, 299, 326, 335, 415, 513, 646
BmrFI CCNGG 8 cut(s) 185, 197, 296, 302, 338, 412, 494, 516
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 2 cut(s) 397, 573
BmuI ACTGGG 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 2 cut(s) 167, 352
BpuEI CTTGAG 2 cut(s) 344, 350
BpuMI CCSGG 5 cut(s) 296, 338, 412, 494, 516
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 5, 645
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 5 cut(s) 215, 306, 315, 411, 514
BsaWI WCCGGW 2 cut(s) 450, 629
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 235, 265
Bse118I RCCGGY 8 cut(s) 42, 354, 416, 472, 504, 538, 603, 647
Bse1I ACTGG 2 cut(s) 223, 675
BseBI CCWGG 3 cut(s) 185, 197, 302
BseDI CCNNGG 5 cut(s) 215, 306, 315, 411, 514
BseNI ACTGG 2 cut(s) 223, 675
BseRI GAGGAG 4 cut(s) 160, 232, 243, 246
BseX3I CGGCCG 1 cut(s) 502
BseXI GCAGC 6 cut(s) 75, 169, 388, 522, 541, 603
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 3 cut(s) 43, 295, 505
BshNI GGYRCC 1 cut(s) 644
BsiEI CGRYCG 3 cut(s) 43, 295, 505
BsiHKAI GWGCWC 1 cut(s) 501
BslFI GGGAC 1 cut(s) 497
BsmAI GTCTC 2 cut(s) 205, 631
BsmFI GGGAC 1 cut(s) 497
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 2 cut(s) 15, 653
Bsp68I TCGCGA 1 cut(s) 51
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 221, 299, 326, 335, 415, 513, 646
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 2 cut(s) 411, 577
BspPI GGATC 1 cut(s) 661
BspT107I GGYRCC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 8 cut(s) 42, 354, 416, 472, 504, 538, 603, 647
BsrI ACTGG 2 cut(s) 223, 675
BssAI RCCGGY 8 cut(s) 42, 354, 416, 472, 504, 538, 603, 647
BssECI CCNNGG 5 cut(s) 215, 306, 315, 411, 514
BssMI GATC 2 cut(s) 15, 653
BssNI GRCGYC 2 cut(s) 5, 645
BssT1I CCWWGG 1 cut(s) 315
Bst2UI CCWGG 3 cut(s) 185, 197, 302
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 2 cut(s) 5, 645
BstAPI GCANNNNNTGC 1 cut(s) 535
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 6 cut(s) 93, 418, 470, 474, 605, 649
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 191, 648
BstHHI GCGC 2 cut(s) 190, 647
BstKTI GATC 2 cut(s) 18, 656
BstMAI GTCTC 2 cut(s) 205, 631
BstMBI GATC 2 cut(s) 15, 653
BstMCI CGRYCG 3 cut(s) 43, 295, 505
BstMWI GCNNNNNNNGC 9 cut(s) 97, 187, 311, 385, 404, 413, 478, 535, 613
BstNI CCWGG 3 cut(s) 185, 197, 302
BstSCI CCNGG 8 cut(s) 183, 195, 294, 300, 336, 410, 492, 514
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 6 cut(s) 75, 169, 388, 522, 541, 603
BstV2I GAAGAC 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 2 cut(s) 411, 577
Cac8I GCNNGC 6 cut(s) 93, 418, 470, 474, 605, 649
CaiI CAGNNNCTG 2 cut(s) 190, 535
CfoI GCGC 2 cut(s) 190, 647
Cfr10I RCCGGY 8 cut(s) 42, 354, 416, 472, 504, 538, 603, 647
Cfr13I GGNCC 8 cut(s) 103, 273, 298, 324, 339, 414, 490, 511
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 598
DinI GGCGCC 1 cut(s) 646
DpnI GATC 2 cut(s) 17, 655
DpnII GATC 2 cut(s) 15, 653
EaeI YGGCCR 4 cut(s) 303, 309, 405, 502
EagI CGGCCG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 2 cut(s) 193, 666
EclXI CGGCCG 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 5 cut(s) 103, 298, 324, 490, 511
Eco52I CGGCCG 1 cut(s) 502
Eco72I CACGTG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 298, 324
EcoRII CCWGG 3 cut(s) 183, 195, 300
EcoT14I CCWWGG 1 cut(s) 315
EgeI GGCGCC 1 cut(s) 646
EheI GGCGCC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 315
FaeI CATG 1 cut(s) 601
FaiI YATR 2 cut(s) 567, 599
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 597
FauI CCCGC 1 cut(s) 335
FspBI CTAG 2 cut(s) 60, 548
GlaI GCGC 2 cut(s) 189, 646
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 2 cut(s) 167, 352
HaeII RGCGCY 2 cut(s) 191, 648
HhaI GCGC 2 cut(s) 190, 647
Hin1I GRCGYC 2 cut(s) 5, 645
Hin1II CATG 1 cut(s) 601
Hin6I GCGC 2 cut(s) 188, 645
HinP1I GCGC 2 cut(s) 188, 645
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 22, 53, 544
HphI GGTGA 2 cut(s) 340, 553
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 40, 148, 393, 593
Hpy188III TCNNGA 4 cut(s) 19, 50, 60, 548
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 3 cut(s) 232, 235, 267
HpyAV CCTTC 3 cut(s) 122, 451, 481
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 91, 481, 586
HpyF10VI GCNNNNNNNGC 9 cut(s) 97, 187, 311, 385, 404, 413, 478, 535, 613
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 2 cut(s) 5, 645
Hsp92II CATG 1 cut(s) 601
HspAI GCGC 2 cut(s) 188, 645
KasI GGCGCC 1 cut(s) 644
KroI GCCGGC 4 cut(s) 416, 472, 603, 647
KroNI GCCGGC 4 cut(s) 418, 474, 605, 649
Kzo9I GATC 2 cut(s) 15, 653
LmnI GCTCC 3 cut(s) 186, 219, 333
Lsp1109I GCAGC 6 cut(s) 75, 169, 388, 522, 541, 603
LweI GCATC 2 cut(s) 397, 573
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 548
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 28, 164
MalI GATC 2 cut(s) 17, 655
MboI GATC 2 cut(s) 15, 653
MboII GAAGA 6 cut(s) 88, 91, 94, 228, 439, 563
MhlI GDGCHC 1 cut(s) 501
MluCI AATT 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 645
MmeI TCCRAC 2 cut(s) 63, 558
MreI CGCCGGCG 1 cut(s) 647
MroNI GCCGGC 4 cut(s) 416, 472, 603, 647
MspA1I CMGCKG 3 cut(s) 330, 535, 616
MspR9I CCNGG 8 cut(s) 185, 197, 296, 302, 338, 412, 494, 516
MvaI CCWGG 3 cut(s) 185, 197, 302
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 9 cut(s) 97, 187, 311, 385, 404, 413, 478, 535, 613
NaeI GCCGGC 4 cut(s) 418, 474, 605, 649
NarI GGCGCC 1 cut(s) 645
NciI CCSGG 5 cut(s) 296, 338, 412, 494, 516
NdeII GATC 2 cut(s) 15, 653
NgoMIV GCCGGC 4 cut(s) 416, 472, 603, 647
NlaIII CATG 1 cut(s) 601
NlaIV GGNNCC 7 cut(s) 221, 299, 326, 335, 415, 513, 646
NmeAIII GCCGAG 2 cut(s) 240, 480
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PdiI GCCGGC 4 cut(s) 418, 474, 605, 649
PfeI GAWTC 3 cut(s) 22, 53, 544
PflFI GACNNNGTC 2 cut(s) 267, 296
PluTI GGCGCC 1 cut(s) 648
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 298, 324
Psp5II RGGWCCY 2 cut(s) 298, 324
Psp6I CCWGG 3 cut(s) 183, 195, 300
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 3 cut(s) 183, 195, 300
PspN4I GGNNCC 7 cut(s) 221, 299, 326, 335, 415, 513, 646
PspPI GGNCC 8 cut(s) 103, 273, 298, 324, 339, 414, 490, 511
PspPPI RGGWCCY 2 cut(s) 298, 324
PstI CTGCAG 1 cut(s) 93
PstNI CAGNNNCTG 2 cut(s) 190, 535
PsyI GACNNNGTC 2 cut(s) 267, 296
PvuII CAGCTG 1 cut(s) 616
RruI TCGCGA 1 cut(s) 51
Sau3AI GATC 2 cut(s) 15, 653
Sau96I GGNCC 8 cut(s) 103, 273, 298, 324, 339, 414, 490, 511
ScrFI CCNGG 8 cut(s) 185, 197, 296, 302, 338, 412, 494, 516
SduI GDGCHC 1 cut(s) 501
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 2 cut(s) 397, 573
SfcI CTRYAG 1 cut(s) 89
SfiI GGCCNNNNNGGCC 1 cut(s) 413
SfoI GGCGCC 1 cut(s) 646
SgrAI CRCCGGYG 1 cut(s) 647
SinI GGWCC 5 cut(s) 103, 298, 324, 490, 511
SmlI CTYRAG 2 cut(s) 359, 365
SmoI CTYRAG 2 cut(s) 359, 365
Sse9I AATT 1 cut(s) 176
SspDI GGCGCC 1 cut(s) 644
SspMI CTAG 2 cut(s) 60, 548
StyD4I CCNGG 8 cut(s) 183, 195, 294, 300, 336, 410, 492, 514
StyI CCWWGG 1 cut(s) 315
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 176
TauI GCSGC 9 cut(s) 290, 314, 401, 404, 407, 535, 575, 670, 673
TfiI GAWTC 3 cut(s) 22, 53, 544
TscAI CASTG 1 cut(s) 18
TseI GCWGC 6 cut(s) 88, 157, 376, 529, 535, 616
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 2 cut(s) 267, 296
VpaK11BI GGWCC 5 cut(s) 103, 298, 324, 490, 511
XbaI TCTAGA 2 cut(s) 59, 547
XspI CTAG 2 cut(s) 60, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.