FvH4_4g20270

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009174
Physical Location & Seq
Reverse (-)
23598381 .. 23599067
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20270.t1

Sequence Viewer

Length: 687 bp
ATGGCGTCAACAACTCTGATCTCCAATCCCGTAGCCACCTCCTCCGATCATCGTCCTTCTAGAATACAACGCAAGAAGAAGAAGAAGCAGCAGCTCCAGGCAGCCAAACAGGACCACCACAACCACCTCCACTCCCACGTCACCAAATGGAAATCCGAAGCCCAGCAGCATCTCTACTCCTCCAAATTGCTCCAGGCCCTCAACAACGTCACCGTTGAGCCCTCCACCCAGTCATCATCCTCCACGTGTCCTCCTCCTCCTCCGCGCCGCGGCCGGGCTGTTCGGGAAGCCGCGGACCGGGTCCTGGCCGCGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGATCAAGTTCCGGCAGCACCGCAAGCAGCAGAGCGCGGCGGCGGCGGCGACCGGCGCCGGGAAGTTGAAGAAGCAGAAGTTTAGTGTTTTCCGGTTGAAGGGGAAGGGGTTACCGGCTGTGCAGAGGAAGGTGAGGGTGCTCGGCCGGTTGGTTCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTGGAAGAGGCGACTGATTATATTGCGGCTTTGGAGATGCAGGTCCGGGCTATGAGCCGGCTCACGCAGCTGCTTTCTGTCTCCGGTTCGACTTCCGGCGCCGGCGGGTCAGGTTCTTCGCCGCCGTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.87

Weight (kDa)

11.65

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 54 - 121 8.2e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 2 cut(s) 419, 650
AccII CGCG 5 cut(s) 265, 270, 293, 311, 401
AcoI YGGCCR 4 cut(s) 271, 306, 312, 508
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 3 cut(s) 5, 420, 651
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 433, 463
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 3 cut(s) 96, 192, 303
AluBI AGCT 2 cut(s) 94, 622
AluI AGCT 2 cut(s) 94, 622
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 637
AlwNI CAGNNNCTG 1 cut(s) 541
AoxI GGCC 6 cut(s) 195, 271, 306, 312, 342, 508
AspLEI GCGC 4 cut(s) 267, 401, 422, 653
AspS9I GGNCC 7 cut(s) 112, 196, 295, 301, 327, 342, 595
AsuC2I CCSGG 6 cut(s) 275, 299, 341, 424, 522, 599
AsuHPI GGTGA 5 cut(s) 133, 202, 343, 508, 559
AvaII GGWCC 5 cut(s) 112, 295, 301, 327, 595
BanI GGYRCC 2 cut(s) 419, 650
BanII GRGCYC 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 507
BceAI ACGGC 1 cut(s) 661
BciT130I CCWGG 3 cut(s) 98, 194, 305
BcnI CCSGG 6 cut(s) 275, 299, 341, 424, 522, 599
BcoDI GTCTC 1 cut(s) 637
BfaI CTAG 1 cut(s) 60
BfoI RGCGCY 2 cut(s) 423, 654
BfuAI ACCTGC 1 cut(s) 583
Bme1390I CCNGG 9 cut(s) 98, 194, 275, 299, 305, 341, 424, 522, 599
Bme18I GGWCC 5 cut(s) 112, 295, 301, 327, 595
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 7 cut(s) 112, 196, 295, 301, 327, 342, 595
BmiI GGNNCC 6 cut(s) 302, 329, 338, 421, 519, 652
BmrFI CCNGG 9 cut(s) 98, 194, 275, 299, 305, 341, 424, 522, 599
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 178, 579
BmuI ACTGGG 1 cut(s) 223
BpmI CTGGAG 3 cut(s) 80, 176, 355
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 6 cut(s) 275, 299, 341, 424, 522, 599
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 3 cut(s) 5, 420, 651
BsaJI CCNNGG 4 cut(s) 268, 291, 309, 318
BsaWI WCCGGW 2 cut(s) 456, 635
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 235, 265
Bse118I RCCGGY 7 cut(s) 357, 416, 478, 510, 544, 609, 653
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 98, 194, 305
BseDI CCNNGG 4 cut(s) 268, 291, 309, 318
BseGI GGATG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 5 cut(s) 31, 169, 243, 246, 249
BseX3I CGGCCG 3 cut(s) 271, 312, 508
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 5 cut(s) 265, 270, 293, 311, 401
Bsh1285I CGRYCG 4 cut(s) 274, 315, 417, 511
BshFI GGCC 6 cut(s) 197, 273, 308, 314, 344, 510
BshNI GGYRCC 2 cut(s) 419, 650
BsiEI CGRYCG 4 cut(s) 274, 315, 417, 511
BsiHKAI GWGCWC 1 cut(s) 507
BsmAI GTCTC 1 cut(s) 637
BsnI GGCC 6 cut(s) 197, 273, 308, 314, 344, 510
Bsp1286I GDGCHC 2 cut(s) 222, 507
Bsp143I GATC 3 cut(s) 18, 46, 366
BspANI GGCC 6 cut(s) 197, 273, 308, 314, 344, 510
BspFNI CGCG 5 cut(s) 265, 270, 293, 311, 401
BspLI GGNNCC 6 cut(s) 302, 329, 338, 421, 519, 652
BspMI ACCTGC 1 cut(s) 583
BspT107I GGYRCC 2 cut(s) 419, 650
BsrFI RCCGGY 7 cut(s) 357, 416, 478, 510, 544, 609, 653
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 7 cut(s) 357, 416, 478, 510, 544, 609, 653
BssECI CCNNGG 4 cut(s) 268, 291, 309, 318
BssMI GATC 3 cut(s) 18, 46, 366
BssNI GRCGYC 3 cut(s) 5, 420, 651
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 3 cut(s) 98, 194, 305
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 3 cut(s) 5, 420, 651
BstAPI GCANNNNNTGC 1 cut(s) 541
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 3 cut(s) 389, 611, 655
BstDSI CCRYGG 3 cut(s) 268, 291, 309
BstEII GGTNACC 1 cut(s) 474
BstF5I GGATG 1 cut(s) 236
BstFNI CGCG 5 cut(s) 265, 270, 293, 311, 401
BstH2I RGCGCY 2 cut(s) 423, 654
BstHHI GCGC 4 cut(s) 267, 401, 422, 653
BstKTI GATC 3 cut(s) 21, 49, 369
BstMAI GTCTC 1 cut(s) 637
BstMBI GATC 3 cut(s) 18, 46, 366
BstMCI CGRYCG 4 cut(s) 274, 315, 417, 511
BstMWI GCNNNNNNNGC 7 cut(s) 314, 388, 407, 410, 419, 541, 619
BstNI CCWGG 3 cut(s) 98, 194, 305
BstPI GGTNACC 1 cut(s) 474
BstSCI CCNGG 9 cut(s) 96, 192, 273, 297, 303, 339, 422, 520, 597
BstUI CGCG 5 cut(s) 265, 270, 293, 311, 401
BstZI CGGCCG 3 cut(s) 271, 312, 508
BsuRI GGCC 6 cut(s) 197, 273, 308, 314, 344, 510
BtgI CCRYGG 3 cut(s) 268, 291, 309
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 236
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 389, 611, 655
CaiI CAGNNNCTG 1 cut(s) 541
CciNI GCGGCCGC 1 cut(s) 312
CfoI GCGC 4 cut(s) 267, 401, 422, 653
Cfr10I RCCGGY 7 cut(s) 357, 416, 478, 510, 544, 609, 653
Cfr13I GGNCC 7 cut(s) 112, 196, 295, 301, 327, 342, 595
Cfr42I CCGCGG 3 cut(s) 271, 294, 312
CpoI CGGWCCG 1 cut(s) 295
CspI CGGWCCG 1 cut(s) 295
DinI GGCGCC 2 cut(s) 421, 652
DpnI GATC 3 cut(s) 20, 48, 368
DpnII GATC 3 cut(s) 18, 46, 366
EaeI YGGCCR 4 cut(s) 271, 306, 312, 508
EagI CGGCCG 3 cut(s) 271, 312, 508
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
EclXI CGGCCG 3 cut(s) 271, 312, 508
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 5 cut(s) 112, 295, 301, 327, 595
Eco52I CGGCCG 3 cut(s) 271, 312, 508
Eco72I CACGTG 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 474
EcoO109I RGGNCCY 3 cut(s) 196, 301, 327
EcoO65I GGTNACC 1 cut(s) 474
EcoRII CCWGG 3 cut(s) 96, 192, 303
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 222
EgeI GGCGCC 2 cut(s) 421, 652
EheI GGCGCC 2 cut(s) 421, 652
ErhI CCWWGG 1 cut(s) 318
FaiI YATR 2 cut(s) 573, 605
FauI CCCGC 2 cut(s) 338, 650
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 222
FspBI CTAG 1 cut(s) 60
GlaI GCGC 4 cut(s) 266, 400, 421, 652
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 3 cut(s) 80, 176, 355
HaeII RGCGCY 2 cut(s) 423, 654
HaeIII GGCC 6 cut(s) 197, 273, 308, 314, 344, 510
HhaI GCGC 4 cut(s) 267, 401, 422, 653
Hin1I GRCGYC 3 cut(s) 5, 420, 651
Hin6I GCGC 4 cut(s) 265, 399, 420, 651
HinP1I GCGC 4 cut(s) 265, 399, 420, 651
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 550
HphI GGTGA 5 cut(s) 133, 202, 343, 508, 559
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 18, 46, 157
Hpy188III TCNNGA 4 cut(s) 60, 284, 364, 554
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 682
HpyAV CCTTC 4 cut(s) 66, 457, 463, 487
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 138, 207, 245
HpyCH4V TGCA 2 cut(s) 487, 592
HpyF10VI GCNNNNNNNGC 7 cut(s) 314, 388, 407, 410, 419, 541, 619
HpySE526I ACGT 3 cut(s) 138, 207, 245
Hsp92I GRCGYC 3 cut(s) 5, 420, 651
HspAI GCGC 4 cut(s) 265, 399, 420, 651
KasI GGCGCC 2 cut(s) 419, 650
KroI GCCGGC 2 cut(s) 609, 653
KroNI GCCGGC 2 cut(s) 611, 655
KspI CCGCGG 3 cut(s) 271, 294, 312
Kzo9I GATC 3 cut(s) 18, 46, 366
LmnI GCTCC 3 cut(s) 99, 195, 336
LweI GCATC 2 cut(s) 178, 579
MaeI CTAG 1 cut(s) 60
MaeII ACGT 3 cut(s) 138, 207, 245
MaeIII GTNAC 3 cut(s) 139, 208, 474
MalI GATC 3 cut(s) 20, 48, 368
MboI GATC 3 cut(s) 18, 46, 366
MboII GAAGA 6 cut(s) 88, 91, 94, 445, 569, 660
MhlI GDGCHC 2 cut(s) 222, 507
MluCI AATT 1 cut(s) 185
Mly113I GGCGCC 2 cut(s) 420, 651
MreI CGCCGGCG 1 cut(s) 653
MroNI GCCGGC 2 cut(s) 609, 653
MspA1I CMGCKG 6 cut(s) 270, 293, 311, 333, 541, 622
MspR9I CCNGG 9 cut(s) 98, 194, 275, 299, 305, 341, 424, 522, 599
MvaI CCWGG 3 cut(s) 98, 194, 305
MvnI CGCG 5 cut(s) 265, 270, 293, 311, 401
MwoI GCNNNNNNNGC 7 cut(s) 314, 388, 407, 410, 419, 541, 619
NaeI GCCGGC 2 cut(s) 611, 655
NarI GGCGCC 2 cut(s) 420, 651
NciI CCSGG 6 cut(s) 275, 299, 341, 424, 522, 599
NdeII GATC 3 cut(s) 18, 46, 366
NgoMIV GCCGGC 2 cut(s) 609, 653
NlaIV GGNNCC 6 cut(s) 302, 329, 338, 421, 519, 652
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 2 cut(s) 139, 208
NotI GCGGCCGC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PdiI GCCGGC 2 cut(s) 611, 655
PfeI GAWTC 1 cut(s) 550
PflFI GACNNNGTC 1 cut(s) 299
PluTI GGCGCC 2 cut(s) 423, 654
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 301, 327
Psp5II RGGWCCY 2 cut(s) 301, 327
Psp6I CCWGG 3 cut(s) 96, 192, 303
PspCI CACGTG 1 cut(s) 246
PspEI GGTNACC 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 3 cut(s) 96, 192, 303
PspN4I GGNNCC 6 cut(s) 302, 329, 338, 421, 519, 652
PspPI GGNCC 7 cut(s) 112, 196, 295, 301, 327, 342, 595
PspPPI RGGWCCY 2 cut(s) 301, 327
PstNI CAGNNNCTG 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 622
Rsr2I CGGWCCG 1 cut(s) 295
RsrII CGGWCCG 1 cut(s) 295
SacII CCGCGG 3 cut(s) 271, 294, 312
Sau3AI GATC 3 cut(s) 18, 46, 366
Sau96I GGNCC 7 cut(s) 112, 196, 295, 301, 327, 342, 595
ScrFI CCNGG 9 cut(s) 98, 194, 275, 299, 305, 341, 424, 522, 599
SduI GDGCHC 2 cut(s) 222, 507
SfaNI GCATC 2 cut(s) 178, 579
SfoI GGCGCC 2 cut(s) 421, 652
Sfr303I CCGCGG 3 cut(s) 271, 294, 312
SgrAI CRCCGGYG 1 cut(s) 653
SgrBI CCGCGG 3 cut(s) 271, 294, 312
SinI GGWCC 5 cut(s) 112, 295, 301, 327, 595
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 1 cut(s) 185
SspDI GGCGCC 2 cut(s) 419, 650
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 9 cut(s) 96, 192, 273, 297, 303, 339, 422, 520, 597
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 3 cut(s) 141, 210, 248
TaqI TCGA 2 cut(s) 641, 680
TasI AATT 1 cut(s) 185
TfiI GAWTC 1 cut(s) 550
TseFI GTSAC 2 cut(s) 139, 208
Tsp45I GTSAC 2 cut(s) 139, 208
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 5 cut(s) 112, 295, 301, 327, 595
XbaI TCTAGA 1 cut(s) 59
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.