RLG00000007340

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0009174
Physical Location & Seq
Reverse (-)
15978264 .. 15978938
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007340

Sequence Viewer

Length: 675 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACCTCCGACCGGCCTCGCGATTCATCTAGAATACAGCGCAAGAAGAAGAAGAAGCTCCAGGCCAAGCAGGACCACCACCTTCTCGTTCAGCACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCGCTGAGCCGAGGAGCCAGTCGTCGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGGCGGCCGCCACCGGGACCGGCCGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGGAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCAGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGGTCTTCGCCGCCGCCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.79

Weight (kDa)

11.82

Isoelectric Point (pI)

56.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 120 3.5e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 638
AccII CGCG 1 cut(s) 51
AclWI GGATC 1 cut(s) 655
AcoI YGGCCR 5 cut(s) 300, 306, 396, 412, 496
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 246
AcyI GRCGYC 2 cut(s) 5, 639
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 2 cut(s) 421, 451
AjnI CCWGG 4 cut(s) 90, 183, 195, 297
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 88, 361, 610
AluI AGCT 3 cut(s) 88, 361, 610
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 2 cut(s) 205, 625
AlwI GGATC 1 cut(s) 655
AlwNI CAGNNNCTG 2 cut(s) 190, 529
ApeKI GCWGC 6 cut(s) 157, 373, 385, 523, 529, 610
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 3 cut(s) 72, 190, 641
AspS9I GGNCC 8 cut(s) 103, 270, 295, 321, 336, 408, 484, 505
AsuC2I CCSGG 5 cut(s) 293, 335, 406, 488, 510
AsuHPI GGTGA 2 cut(s) 337, 547
AvaII GGWCC 6 cut(s) 103, 295, 321, 408, 484, 505
BanI GGYRCC 1 cut(s) 638
BbrPI CACGTG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 228, 648
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 6 cut(s) 169, 385, 397, 516, 535, 597
BceAI ACGGC 2 cut(s) 257, 287
BciT130I CCWGG 4 cut(s) 92, 185, 197, 299
BcnI CCSGG 5 cut(s) 293, 335, 406, 488, 510
BcoDI GTCTC 2 cut(s) 205, 625
BfaI CTAG 2 cut(s) 60, 542
BfoI RGCGCY 2 cut(s) 191, 642
BfuAI ACCTGC 1 cut(s) 571
BlpI GCTNAGC 1 cut(s) 207
Bme1390I CCNGG 9 cut(s) 92, 185, 197, 293, 299, 335, 406, 488, 510
Bme18I GGWCC 6 cut(s) 103, 295, 321, 408, 484, 505
BmgT120I GGNCC 8 cut(s) 103, 270, 295, 321, 336, 408, 484, 505
BmiI GGNNCC 7 cut(s) 218, 296, 323, 332, 409, 507, 640
BmrFI CCNGG 9 cut(s) 92, 185, 197, 293, 299, 335, 406, 488, 510
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 1 cut(s) 567
BmuI ACTGGG 1 cut(s) 663
BpiI GAAGAC 2 cut(s) 228, 648
BpmI CTGGAG 3 cut(s) 74, 167, 349
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 341, 347
BpuMI CCSGG 5 cut(s) 293, 335, 406, 488, 510
BsaAI YACGTR 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 5, 639
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 212, 303, 312, 508
BsaWI WCCGGW 2 cut(s) 444, 623
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 235, 265
Bse118I RCCGGY 9 cut(s) 42, 351, 410, 414, 466, 498, 532, 597, 641
Bse1I ACTGG 2 cut(s) 220, 669
BseBI CCWGG 4 cut(s) 92, 185, 197, 299
BseDI CCNNGG 4 cut(s) 212, 303, 312, 508
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 220, 669
BseRI GAGGAG 4 cut(s) 160, 229, 243, 246
BseX3I CGGCCG 3 cut(s) 396, 412, 496
BseXI GCAGC 6 cut(s) 169, 385, 397, 516, 535, 597
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 5 cut(s) 43, 292, 399, 415, 499
BshNI GGYRCC 1 cut(s) 638
BsiEI CGRYCG 5 cut(s) 43, 292, 399, 415, 499
BsiHKAI GWGCWC 1 cut(s) 495
BslFI GGGAC 2 cut(s) 421, 491
BsmAI GTCTC 2 cut(s) 205, 625
BsmFI GGGAC 2 cut(s) 421, 491
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 2 cut(s) 15, 647
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp68I TCGCGA 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 218, 296, 323, 332, 409, 507, 640
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 1 cut(s) 655
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 9 cut(s) 42, 351, 410, 414, 466, 498, 532, 597, 641
BsrI ACTGG 2 cut(s) 220, 669
BssAI RCCGGY 9 cut(s) 42, 351, 410, 414, 466, 498, 532, 597, 641
BssECI CCNNGG 4 cut(s) 212, 303, 312, 508
BssMI GATC 2 cut(s) 15, 647
BssNI GRCGYC 2 cut(s) 5, 639
BssT1I CCWWGG 1 cut(s) 312
Bst2UI CCWGG 4 cut(s) 92, 185, 197, 299
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 2 cut(s) 5, 639
BstAPI GCANNNNNTGC 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 464, 468, 599, 643
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 191, 642
BstHHI GCGC 3 cut(s) 72, 190, 641
BstKTI GATC 2 cut(s) 18, 650
BstMAI GTCTC 2 cut(s) 205, 625
BstMBI GATC 2 cut(s) 15, 647
BstMCI CGRYCG 5 cut(s) 43, 292, 399, 415, 499
BstMWI GCNNNNNNNGC 6 cut(s) 187, 308, 382, 472, 529, 607
BstNI CCWGG 4 cut(s) 92, 185, 197, 299
BstSCI CCNGG 9 cut(s) 90, 183, 195, 291, 297, 333, 404, 486, 508
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 6 cut(s) 169, 385, 397, 516, 535, 597
BstV2I GAAGAC 2 cut(s) 228, 648
BstZI CGGCCG 3 cut(s) 396, 412, 496
BtgI CCRYGG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 4 cut(s) 464, 468, 599, 643
CaiI CAGNNNCTG 2 cut(s) 190, 529
CciNI GCGGCCGC 1 cut(s) 396
CfoI GCGC 3 cut(s) 72, 190, 641
Cfr10I RCCGGY 9 cut(s) 42, 351, 410, 414, 466, 498, 532, 597, 641
Cfr13I GGNCC 8 cut(s) 103, 270, 295, 321, 336, 408, 484, 505
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 592
DdeI CTNAG 1 cut(s) 207
DinI GGCGCC 1 cut(s) 640
DpnI GATC 2 cut(s) 17, 649
DpnII GATC 2 cut(s) 15, 647
EaeI YGGCCR 5 cut(s) 300, 306, 396, 412, 496
EagI CGGCCG 3 cut(s) 396, 412, 496
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 660
EclXI CGGCCG 3 cut(s) 396, 412, 496
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 6 cut(s) 103, 295, 321, 408, 484, 505
Eco52I CGGCCG 3 cut(s) 396, 412, 496
Eco72I CACGTG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 295, 321
EcoRII CCWGG 4 cut(s) 90, 183, 195, 297
EcoT14I CCWWGG 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 640
EheI GGCGCC 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 595
FaiI YATR 2 cut(s) 561, 593
FaqI GGGAC 2 cut(s) 421, 491
FatI CATG 1 cut(s) 591
FauI CCCGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 60, 542
GlaI GCGC 3 cut(s) 71, 189, 640
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 3 cut(s) 74, 167, 349
HaeII RGCGCY 2 cut(s) 191, 642
HhaI GCGC 3 cut(s) 72, 190, 641
Hin1I GRCGYC 2 cut(s) 5, 639
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 3 cut(s) 70, 188, 639
HinP1I GCGC 3 cut(s) 70, 188, 639
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 22, 53, 538
HphI GGTGA 2 cut(s) 337, 547
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 40, 148, 587
Hpy188III TCNNGA 4 cut(s) 19, 50, 60, 542
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 4 cut(s) 229, 232, 235, 264
HpyAV CCTTC 4 cut(s) 122, 445, 451, 475
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 475, 580
HpyF10VI GCNNNNNNNGC 6 cut(s) 187, 308, 382, 472, 529, 607
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 2 cut(s) 5, 639
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 3 cut(s) 70, 188, 639
KasI GGCGCC 1 cut(s) 638
KroI GCCGGC 3 cut(s) 466, 597, 641
KroNI GCCGGC 3 cut(s) 468, 599, 643
Kzo9I GATC 2 cut(s) 15, 647
LmnI GCTCC 4 cut(s) 93, 186, 216, 330
Lsp1109I GCAGC 6 cut(s) 169, 385, 397, 516, 535, 597
LweI GCATC 1 cut(s) 567
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 542
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 17, 649
MboI GATC 2 cut(s) 15, 647
MboII GAAGA 7 cut(s) 88, 91, 94, 228, 433, 557, 648
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 2 cut(s) 162, 176
Mly113I GGCGCC 1 cut(s) 639
MmeI TCCRAC 2 cut(s) 63, 552
MreI CGCCGGCG 1 cut(s) 641
MroNI GCCGGC 3 cut(s) 466, 597, 641
MspA1I CMGCKG 4 cut(s) 206, 327, 529, 610
MspR9I CCNGG 9 cut(s) 92, 185, 197, 293, 299, 335, 406, 488, 510
MvaI CCWGG 4 cut(s) 92, 185, 197, 299
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 6 cut(s) 187, 308, 382, 472, 529, 607
NaeI GCCGGC 3 cut(s) 468, 599, 643
NarI GGCGCC 1 cut(s) 639
NciI CCSGG 5 cut(s) 293, 335, 406, 488, 510
NdeII GATC 2 cut(s) 15, 647
NgoMIV GCCGGC 3 cut(s) 466, 597, 641
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 7 cut(s) 218, 296, 323, 332, 409, 507, 640
NmeAIII GCCGAG 2 cut(s) 237, 474
NotI GCGGCCGC 1 cut(s) 396
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 274
PdiI GCCGGC 3 cut(s) 468, 599, 643
PfeI GAWTC 3 cut(s) 22, 53, 538
PflFI GACNNNGTC 2 cut(s) 264, 293
PluTI GGCGCC 1 cut(s) 642
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 2 cut(s) 295, 321
Psp5II RGGWCCY 2 cut(s) 295, 321
Psp6I CCWGG 4 cut(s) 90, 183, 195, 297
PspCI CACGTG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 4 cut(s) 90, 183, 195, 297
PspN4I GGNNCC 7 cut(s) 218, 296, 323, 332, 409, 507, 640
PspPI GGNCC 8 cut(s) 103, 270, 295, 321, 336, 408, 484, 505
PspPPI RGGWCCY 2 cut(s) 295, 321
PstNI CAGNNNCTG 2 cut(s) 190, 529
PsyI GACNNNGTC 2 cut(s) 264, 293
PvuII CAGCTG 1 cut(s) 610
RruI TCGCGA 1 cut(s) 51
Sau3AI GATC 2 cut(s) 15, 647
Sau96I GGNCC 8 cut(s) 103, 270, 295, 321, 336, 408, 484, 505
ScrFI CCNGG 9 cut(s) 92, 185, 197, 293, 299, 335, 406, 488, 510
SduI GDGCHC 1 cut(s) 495
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 567
SfoI GGCGCC 1 cut(s) 640
SgrAI CRCCGGYG 1 cut(s) 641
SinI GGWCC 6 cut(s) 103, 295, 321, 408, 484, 505
SmlI CTYRAG 2 cut(s) 356, 362
SmoI CTYRAG 2 cut(s) 356, 362
Sse9I AATT 2 cut(s) 162, 176
SspDI GGCGCC 1 cut(s) 638
SspMI CTAG 2 cut(s) 60, 542
StyD4I CCNGG 9 cut(s) 90, 183, 195, 291, 297, 333, 404, 486, 508
StyI CCWWGG 1 cut(s) 312
TaiI ACGT 1 cut(s) 248
TaqI TCGA 2 cut(s) 20, 259
TasI AATT 2 cut(s) 162, 176
TauI GCSGC 8 cut(s) 287, 311, 398, 401, 529, 569, 664, 667
TfiI GAWTC 3 cut(s) 22, 53, 538
TscAI CASTG 1 cut(s) 18
TseI GCWGC 6 cut(s) 157, 373, 385, 523, 529, 610
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 2 cut(s) 264, 293
VpaK11BI GGWCC 6 cut(s) 103, 295, 321, 408, 484, 505
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 59, 541
XspI CTAG 2 cut(s) 60, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.