Rh4BG269200

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009174
Physical Location & Seq
Forward (+)
44322270 .. 44323541
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG269200.1

Sequence Viewer

Length: 693 bp
ATGGCGTCAACACTGATCTCGAATCCCGTAACCACCTCCGACCGGCCTCGCGATTCTTCTAGAATACAGCGCAAGAAGAAGAAGAAGCTCCAGGCCAAGCAGGACCACCACCTTCTCGTTCAACACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCGCTGAGCCCAGGAGCCAGTCGTCGTCGTCGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCCTCCTCCTCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGGCGGCGGCGGCCACCGGGACCGGCCGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGGAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCAGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGTTCTTCGCCGCCGCCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.26

Weight (kDa)

11.78

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 125 8.5e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccB1I GGYRCC 1 cut(s) 656
AccII CGCG 1 cut(s) 51
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 5 cut(s) 315, 321, 417, 430, 514
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 5, 657
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 3 cut(s) 122, 439, 469
AjnI CCWGG 5 cut(s) 90, 183, 195, 212, 312
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 88, 376, 628
AluI AGCT 3 cut(s) 88, 376, 628
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 2 cut(s) 205, 643
AlwI GGATC 1 cut(s) 673
AlwNI CAGNNNCTG 2 cut(s) 190, 547
ApeKI GCWGC 6 cut(s) 157, 388, 400, 541, 547, 628
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 3 cut(s) 72, 190, 659
AspS9I GGNCC 8 cut(s) 103, 285, 310, 336, 351, 426, 502, 523
AsuC2I CCSGG 5 cut(s) 308, 350, 424, 506, 528
AsuHPI GGTGA 2 cut(s) 352, 565
AvaII GGWCC 6 cut(s) 103, 310, 336, 426, 502, 523
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 213
BbrPI CACGTG 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 6 cut(s) 169, 400, 412, 534, 553, 615
BceAI ACGGC 2 cut(s) 272, 302
BciT130I CCWGG 5 cut(s) 92, 185, 197, 214, 314
BcnI CCSGG 5 cut(s) 308, 350, 424, 506, 528
BcoDI GTCTC 2 cut(s) 205, 643
BfaI CTAG 2 cut(s) 60, 560
BfoI RGCGCY 2 cut(s) 191, 660
BfuAI ACCTGC 1 cut(s) 589
BlpI GCTNAGC 1 cut(s) 207
Bme18I GGWCC 6 cut(s) 103, 310, 336, 426, 502, 523
BmgT120I GGNCC 8 cut(s) 103, 285, 310, 336, 351, 426, 502, 523
BmiI GGNNCC 7 cut(s) 218, 311, 338, 347, 427, 525, 658
BmrI ACTGGG 1 cut(s) 681
BmsI GCATC 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 681
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 3 cut(s) 74, 167, 364
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 356, 362
BpuMI CCSGG 5 cut(s) 308, 350, 424, 506, 528
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 2 cut(s) 5, 657
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 4 cut(s) 212, 318, 327, 526
BsaWI WCCGGW 2 cut(s) 462, 641
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 241, 271
Bse118I RCCGGY 9 cut(s) 42, 366, 428, 432, 484, 516, 550, 615, 659
Bse1I ACTGG 2 cut(s) 220, 687
BseBI CCWGG 5 cut(s) 92, 185, 197, 214, 314
BseDI CCNNGG 4 cut(s) 212, 318, 327, 526
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 220, 687
BseRI GAGGAG 6 cut(s) 160, 249, 252, 255, 258, 261
BseX3I CGGCCG 2 cut(s) 430, 514
BseXI GCAGC 6 cut(s) 169, 400, 412, 534, 553, 615
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 4 cut(s) 43, 307, 433, 517
BshNI GGYRCC 1 cut(s) 656
BsiEI CGRYCG 4 cut(s) 43, 307, 433, 517
BsiHKAI GWGCWC 1 cut(s) 513
BslFI GGGAC 2 cut(s) 439, 509
BsmAI GTCTC 2 cut(s) 205, 643
BsmFI GGGAC 2 cut(s) 439, 509
Bso31I GGTCTC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 213, 513
Bsp143I GATC 2 cut(s) 15, 665
Bsp1720I GCTNAGC 1 cut(s) 207
Bsp68I TCGCGA 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 7 cut(s) 218, 311, 338, 347, 427, 525, 658
BspMI ACCTGC 1 cut(s) 589
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 205
BsrFI RCCGGY 9 cut(s) 42, 366, 428, 432, 484, 516, 550, 615, 659
BsrI ACTGG 2 cut(s) 220, 687
BssAI RCCGGY 9 cut(s) 42, 366, 428, 432, 484, 516, 550, 615, 659
BssECI CCNNGG 4 cut(s) 212, 318, 327, 526
BssMI GATC 2 cut(s) 15, 665
BssNI GRCGYC 2 cut(s) 5, 657
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 5 cut(s) 92, 185, 197, 214, 314
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 2 cut(s) 5, 657
BstAPI GCANNNNNTGC 1 cut(s) 547
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 482, 486, 617, 661
BstDEI CTNAG 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 2 cut(s) 191, 660
BstHHI GCGC 3 cut(s) 72, 190, 659
BstKTI GATC 2 cut(s) 18, 668
BstMAI GTCTC 2 cut(s) 205, 643
BstMBI GATC 2 cut(s) 15, 665
BstMCI CGRYCG 4 cut(s) 43, 307, 433, 517
BstMWI GCNNNNNNNGC 7 cut(s) 187, 323, 397, 416, 490, 547, 625
BstNI CCWGG 5 cut(s) 92, 185, 197, 214, 314
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 6 cut(s) 169, 400, 412, 534, 553, 615
BstV2I GAAGAC 1 cut(s) 234
BstZI CGGCCG 2 cut(s) 430, 514
BtgI CCRYGG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 11
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 4 cut(s) 482, 486, 617, 661
CaiI CAGNNNCTG 2 cut(s) 190, 547
CfoI GCGC 3 cut(s) 72, 190, 659
Cfr10I RCCGGY 9 cut(s) 42, 366, 428, 432, 484, 516, 550, 615, 659
Cfr13I GGNCC 8 cut(s) 103, 285, 310, 336, 351, 426, 502, 523
CsiI ACCWGGT 1 cut(s) 195
CviAII CATG 1 cut(s) 610
DdeI CTNAG 1 cut(s) 207
DinI GGCGCC 1 cut(s) 658
DpnI GATC 2 cut(s) 17, 667
DpnII GATC 2 cut(s) 15, 665
EaeI YGGCCR 5 cut(s) 315, 321, 417, 430, 514
EagI CGGCCG 2 cut(s) 430, 514
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 1 cut(s) 678
EclXI CGGCCG 2 cut(s) 430, 514
Eco130I CCWWGG 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 6 cut(s) 103, 310, 336, 426, 502, 523
Eco52I CGGCCG 2 cut(s) 430, 514
Eco72I CACGTG 1 cut(s) 252
EcoO109I RGGNCCY 2 cut(s) 310, 336
EcoRII CCWGG 5 cut(s) 90, 183, 195, 212, 312
EcoT14I CCWWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 658
EheI GGCGCC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 613
FaiI YATR 2 cut(s) 579, 611
FaqI GGGAC 2 cut(s) 439, 509
FatI CATG 1 cut(s) 609
FauI CCCGC 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 2 cut(s) 60, 560
GlaI GCGC 3 cut(s) 71, 189, 658
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 3 cut(s) 74, 167, 364
HaeII RGCGCY 2 cut(s) 191, 660
HhaI GCGC 3 cut(s) 72, 190, 659
Hin1I GRCGYC 2 cut(s) 5, 657
Hin1II CATG 1 cut(s) 613
Hin6I GCGC 3 cut(s) 70, 188, 657
HinP1I GCGC 3 cut(s) 70, 188, 657
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 22, 53, 556
HphI GGTGA 2 cut(s) 352, 565
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 40, 148, 605
Hpy188III TCNNGA 4 cut(s) 19, 50, 60, 560
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 6 cut(s) 229, 232, 235, 238, 241, 279
HpyAV CCTTC 4 cut(s) 122, 463, 469, 493
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 493, 598
HpyF10VI GCNNNNNNNGC 7 cut(s) 187, 323, 397, 416, 490, 547, 625
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 2 cut(s) 5, 657
Hsp92II CATG 1 cut(s) 613
HspAI GCGC 3 cut(s) 70, 188, 657
KasI GGCGCC 1 cut(s) 656
KroI GCCGGC 3 cut(s) 484, 615, 659
KroNI GCCGGC 3 cut(s) 486, 617, 661
Kzo9I GATC 2 cut(s) 15, 665
LmnI GCTCC 4 cut(s) 93, 186, 216, 345
Lsp1109I GCAGC 6 cut(s) 169, 400, 412, 534, 553, 615
LweI GCATC 1 cut(s) 585
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 2 cut(s) 60, 560
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 17, 667
MboI GATC 2 cut(s) 15, 665
MboII GAAGA 8 cut(s) 48, 88, 91, 94, 234, 451, 575, 666
MhlI GDGCHC 2 cut(s) 213, 513
MluCI AATT 2 cut(s) 162, 176
Mly113I GGCGCC 1 cut(s) 657
MmeI TCCRAC 2 cut(s) 63, 570
MreI CGCCGGCG 1 cut(s) 659
MroNI GCCGGC 3 cut(s) 484, 615, 659
MspA1I CMGCKG 4 cut(s) 206, 342, 547, 628
MvaI CCWGG 5 cut(s) 92, 185, 197, 214, 314
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 7 cut(s) 187, 323, 397, 416, 490, 547, 625
NaeI GCCGGC 3 cut(s) 486, 617, 661
NarI GGCGCC 1 cut(s) 657
NciI CCSGG 5 cut(s) 308, 350, 424, 506, 528
NdeII GATC 2 cut(s) 15, 665
NgoMIV GCCGGC 3 cut(s) 484, 615, 659
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 7 cut(s) 218, 311, 338, 347, 427, 525, 658
NmeAIII GCCGAG 1 cut(s) 492
NruI TCGCGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 4 cut(s) 230, 233, 236, 289
PdiI GCCGGC 3 cut(s) 486, 617, 661
PfeI GAWTC 3 cut(s) 22, 53, 556
PflFI GACNNNGTC 2 cut(s) 279, 308
PluTI GGCGCC 1 cut(s) 660
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 252
PpuMI RGGWCCY 2 cut(s) 310, 336
Psp5II RGGWCCY 2 cut(s) 310, 336
Psp6I CCWGG 5 cut(s) 90, 183, 195, 212, 312
PspCI CACGTG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 5 cut(s) 90, 183, 195, 212, 312
PspN4I GGNNCC 7 cut(s) 218, 311, 338, 347, 427, 525, 658
PspPI GGNCC 8 cut(s) 103, 285, 310, 336, 351, 426, 502, 523
PspPPI RGGWCCY 2 cut(s) 310, 336
PstNI CAGNNNCTG 2 cut(s) 190, 547
PsyI GACNNNGTC 2 cut(s) 279, 308
PvuII CAGCTG 1 cut(s) 628
RruI TCGCGA 1 cut(s) 51
Sau3AI GATC 2 cut(s) 15, 665
Sau96I GGNCC 8 cut(s) 103, 285, 310, 336, 351, 426, 502, 523
SduI GDGCHC 2 cut(s) 213, 513
SetI ASST 9 cut(s) 38, 90, 114, 201, 254, 378, 504, 603, 630
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 658
SgrAI CRCCGGYG 1 cut(s) 659
SinI GGWCC 6 cut(s) 103, 310, 336, 426, 502, 523
SmlI CTYRAG 2 cut(s) 371, 377
SmoI CTYRAG 2 cut(s) 371, 377
Sse9I AATT 2 cut(s) 162, 176
SspDI GGCGCC 1 cut(s) 656
SspMI CTAG 2 cut(s) 60, 560
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 254
TaqI TCGA 2 cut(s) 20, 274
TasI AATT 2 cut(s) 162, 176
TauI GCSGC 9 cut(s) 302, 326, 413, 416, 419, 547, 587, 682, 685
TfiI GAWTC 3 cut(s) 22, 53, 556
TscAI CASTG 1 cut(s) 18
TseI GCWGC 6 cut(s) 157, 388, 400, 541, 547, 628
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 2 cut(s) 279, 308
VpaK11BI GGWCC 6 cut(s) 103, 310, 336, 426, 502, 523
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 59, 559
XspI CTAG 2 cut(s) 60, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.