MD13G1150900.v1.1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0009174
Physical Location & Seq
Reverse (-)
11873744 .. 11874400
657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1150900.v1.1.491

Sequence Viewer

Length: 657 bp
ATGGCGTCGACTCTGATTTCGAATCCCGTAGCCACCTCCGAACGAGCCCGGGATCCTTCTAGAAGGAAAAAGAAGAAGAAAATCCAATCCAAACAAGACCACCTCCACCACCAAGAACCCGCCAACAGCCACACCAAGTGGAAGTCCGAGGCACAGCAGCACCTCTACTCCTCCAAGCTCCTCCACGCCCTCAACCAAGTCTCCATTAACCCCGCACCCGACTCCTCCGCCCCCGCCGCCAACTCCTCCGCTTCCACTTGTACTCCGCCACGCGGCCGAGCCGTTCGCGAGACCGCCGACAGAGTACTCGCCGTCGCAGCTAAGGGTAAGACCCGCTGGAGCCGCGCCATTCTCACCAGCCGCCTTAAAATCAAGTTCCGCCAGCATAAACGGCAGAGATCCGCCGCTGCGTCGGGGACCCGGTCGACCCGGCCCAGGAAGACCAAGTTCAGTGTTCAGCGGCTGAAAGGGAAGGGCTTGCCGGCCGTGCAGAAGAAAGTACGGGTTCTGGGCCGTTTGGTTCCCGGTTGCCGGAAACAGCCGTTGCCGGTGATTCTAGAAGAAGCGACTGATTACATCGCGGCTCTGGAGATGCAGGTCCGAGCCATGAGCCGGCTCACTCAGCTGCTCTCCGGTTCAACTTCCGGCTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.04

Weight (kDa)

11.6

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 51 - 122 2.3e-09 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AccI GTMKAC 2 cut(s) 8, 425
AccII CGCG 4 cut(s) 273, 288, 345, 581
AclWI GGATC 3 cut(s) 47, 60, 393
AcoI YGGCCR 2 cut(s) 274, 483
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 3 cut(s) 262, 306, 501
AfiI CCNNNNNNNGG 4 cut(s) 272, 435, 531, 612
AgsI TTSAA 1 cut(s) 639
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 3 cut(s) 178, 320, 625
AluI AGCT 3 cut(s) 178, 320, 625
Alw26I GTCTC 2 cut(s) 205, 284
AlwI GGATC 3 cut(s) 47, 60, 393
AlwNI CAGNNNCTG 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 4 cut(s) 274, 431, 483, 511
ApeKI GCWGC 4 cut(s) 157, 317, 407, 625
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 4 cut(s) 417, 432, 511, 598
AsuC2I CCSGG 5 cut(s) 49, 50, 421, 430, 525
AsuHPI GGTGA 2 cut(s) 346, 562
AsuII TTCGAA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 2 cut(s) 417, 598
BamHI GGATCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 4 cut(s) 169, 329, 394, 612
BceAI ACGGC 6 cut(s) 266, 296, 407, 470, 498, 526
BciT130I CCWGG 1 cut(s) 436
BcnI CCSGG 5 cut(s) 49, 50, 421, 430, 525
BcoDI GTCTC 2 cut(s) 205, 284
BfaI CTAG 2 cut(s) 60, 557
BfuAI ACCTGC 1 cut(s) 586
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 6 cut(s) 49, 50, 421, 430, 436, 525
Bme18I GGWCC 2 cut(s) 417, 598
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 417, 432, 511, 598
BmiI GGNNCC 6 cut(s) 54, 341, 418, 419, 522, 649
BmrFI CCNGG 6 cut(s) 49, 50, 421, 430, 436, 525
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 446
BpmI CTGGAG 2 cut(s) 358, 608
Bpu10I CCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 5 cut(s) 49, 50, 421, 430, 525
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 48, 147, 434
BsaWI WCCGGW 1 cut(s) 632
BsaXI ACNNNNNCTCC 6 cut(s) 152, 182, 185, 215, 247, 277
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 435, 531, 612
Bse118I RCCGGY 3 cut(s) 481, 547, 612
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 3 cut(s) 48, 147, 434
BseLI CCNNNNNNNGG 4 cut(s) 272, 435, 531, 612
BseMII CTCAG 1 cut(s) 635
BseRI GAGGAG 4 cut(s) 160, 170, 214, 235
BseX3I CGGCCG 2 cut(s) 274, 483
BseXI GCAGC 4 cut(s) 169, 329, 394, 612
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 4 cut(s) 273, 288, 345, 581
Bsh1285I CGRYCG 3 cut(s) 277, 425, 486
BshFI GGCC 4 cut(s) 276, 433, 485, 513
BsiEI CGRYCG 3 cut(s) 277, 425, 486
BsiHKCI CYCGRG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 272, 435, 531, 612
BsmAI GTCTC 2 cut(s) 205, 284
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 4 cut(s) 276, 433, 485, 513
Bso31I GGTCTC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 52, 398
Bsp68I TCGCGA 1 cut(s) 288
BspANI GGCC 4 cut(s) 276, 433, 485, 513
BspCNI CTCAG 1 cut(s) 634
BspFNI CGCG 4 cut(s) 273, 288, 345, 581
BspLI GGNNCC 6 cut(s) 54, 341, 418, 419, 522, 649
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 3 cut(s) 47, 60, 393
BspT104I TTCGAA 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 284
BsrFI RCCGGY 3 cut(s) 481, 547, 612
BssAI RCCGGY 3 cut(s) 481, 547, 612
BssECI CCNNGG 3 cut(s) 48, 147, 434
BssMI GATC 2 cut(s) 52, 398
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 436
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 4 cut(s) 383, 479, 483, 614
BstDEI CTNAG 2 cut(s) 321, 621
BstFNI CGCG 4 cut(s) 273, 288, 345, 581
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 2 cut(s) 55, 401
BstMAI GTCTC 2 cut(s) 205, 284
BstMBI GATC 2 cut(s) 52, 398
BstMCI CGRYCG 3 cut(s) 277, 425, 486
BstMWI GCNNNNNNNGC 6 cut(s) 236, 317, 342, 391, 487, 622
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 6 cut(s) 47, 48, 419, 428, 434, 523
BstUI CGCG 4 cut(s) 273, 288, 345, 581
BstV1I GCAGC 4 cut(s) 169, 329, 394, 612
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 2 cut(s) 52, 398
BstYI RGATCY 2 cut(s) 52, 398
BstZI CGGCCG 2 cut(s) 274, 483
BsuRI GGCC 4 cut(s) 276, 433, 485, 513
BtgZI GCGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 457
BtuMI TCGCGA 1 cut(s) 288
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 4 cut(s) 383, 479, 483, 614
CaiI CAGNNNCTG 1 cut(s) 463
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 3 cut(s) 481, 547, 612
Cfr13I GGNCC 4 cut(s) 417, 432, 511, 598
Cfr9I CCCGGG 1 cut(s) 48
CseI GACGC 1 cut(s) 399
Csp6I GTAC 3 cut(s) 261, 305, 500
CviAII CATG 1 cut(s) 607
CviQI GTAC 3 cut(s) 261, 305, 500
DdeI CTNAG 2 cut(s) 321, 621
DpnI GATC 2 cut(s) 54, 400
DpnII GATC 2 cut(s) 52, 398
DraIII CACNNNGTG 1 cut(s) 138
EaeI YGGCCR 2 cut(s) 274, 483
EagI CGGCCG 2 cut(s) 274, 483
EciI GGCGGA 4 cut(s) 217, 255, 368, 391
EclXI CGGCCG 2 cut(s) 274, 483
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 417, 598
Eco52I CGGCCG 2 cut(s) 274, 483
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 610
FaiI YATR 2 cut(s) 387, 608
FaqI GGGAC 1 cut(s) 430
FatI CATG 1 cut(s) 606
FauI CCCGC 4 cut(s) 127, 220, 241, 341
FblI GTMKAC 2 cut(s) 8, 425
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 2 cut(s) 60, 557
GlaI GCGC 1 cut(s) 346
GsuI CTGGAG 2 cut(s) 358, 608
HaeIII GGCC 4 cut(s) 276, 433, 485, 513
HgaI GACGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 347
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 2 cut(s) 9, 426
HindII GTYRAC 2 cut(s) 9, 426
HinfI GANTC 4 cut(s) 10, 22, 221, 553
HphI GGTGA 2 cut(s) 346, 562
Hpy166II GTNNAC 2 cut(s) 9, 426
Hpy188I TCNGA 4 cut(s) 15, 40, 148, 602
Hpy188III TCNNGA 4 cut(s) 60, 287, 557, 587
Hpy8I GTNNAC 2 cut(s) 9, 426
Hpy99I CGWCG 3 cut(s) 10, 317, 415
HpyAV CCTTC 3 cut(s) 57, 66, 466
HpyCH4V TGCA 2 cut(s) 490, 595
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 317, 342, 391, 487, 622
HpyF3I CTNAG 2 cut(s) 321, 621
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 1 cut(s) 345
KflI GGGWCCC 1 cut(s) 417
KroI GCCGGC 2 cut(s) 481, 612
KroNI GCCGGC 2 cut(s) 483, 614
Kzo9I GATC 2 cut(s) 52, 398
LmnI GCTCC 3 cut(s) 183, 339, 653
Lsp1109I GCAGC 4 cut(s) 169, 329, 394, 612
LweI GCATC 1 cut(s) 582
MaeI CTAG 2 cut(s) 60, 557
MalI GATC 2 cut(s) 54, 400
MboI GATC 2 cut(s) 52, 398
MboII GAAGA 5 cut(s) 85, 88, 451, 505, 572
MflI RGATCY 2 cut(s) 52, 398
MhlI GDGCHC 1 cut(s) 49
MlyI GAGTC 2 cut(s) 4, 215
MnlI CCTC 9 cut(s) 46, 113, 142, 173, 181, 191, 200, 235, 256
MroNI GCCGGC 2 cut(s) 481, 612
MseI TTAA 2 cut(s) 207, 366
MspA1I CMGCKG 4 cut(s) 336, 407, 460, 625
MspR9I CCNGG 6 cut(s) 49, 50, 421, 430, 436, 525
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 4 cut(s) 273, 288, 345, 581
MwoI GCNNNNNNNGC 6 cut(s) 236, 317, 342, 391, 487, 622
NaeI GCCGGC 2 cut(s) 483, 614
NciI CCSGG 5 cut(s) 49, 50, 421, 430, 525
NdeII GATC 2 cut(s) 52, 398
NgoMIV GCCGGC 2 cut(s) 481, 612
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 6 cut(s) 54, 341, 418, 419, 522, 649
NmeAIII GCCGAG 1 cut(s) 302
NruI TCGCGA 1 cut(s) 288
NspV TTCGAA 1 cut(s) 20
PdiI GCCGGC 2 cut(s) 483, 614
PfeI GAWTC 2 cut(s) 22, 553
PflFI GACNNNGTC 1 cut(s) 421
PleI GAGTC 2 cut(s) 4, 215
PpsI GAGTC 2 cut(s) 4, 215
PpuMI RGGWCCY 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 6 cut(s) 54, 341, 418, 419, 522, 649
PspPI GGNCC 4 cut(s) 417, 432, 511, 598
PspPPI RGGWCCY 1 cut(s) 417
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 52, 398
PsyI GACNNNGTC 1 cut(s) 421
PvuII CAGCTG 1 cut(s) 625
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 3 cut(s) 262, 306, 501
RsaNI GTAC 3 cut(s) 261, 305, 500
SalI GTCGAC 2 cut(s) 7, 424
SaqAI TTAA 2 cut(s) 207, 366
Sau3AI GATC 2 cut(s) 52, 398
Sau96I GGNCC 4 cut(s) 417, 432, 511, 598
ScaI AGTACT 1 cut(s) 306
SchI GAGTC 2 cut(s) 4, 215
ScrFI CCNGG 6 cut(s) 49, 50, 421, 430, 436, 525
SduI GDGCHC 1 cut(s) 49
SetI ASST 7 cut(s) 38, 105, 165, 180, 322, 600, 627
SfaNI GCATC 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 2 cut(s) 417, 598
SmaI CCCGGG 1 cut(s) 50
SspMI CTAG 2 cut(s) 60, 557
StyD4I CCNGG 6 cut(s) 47, 48, 419, 428, 434, 523
TaqI TCGA 3 cut(s) 8, 20, 425
TatI WGTACW 2 cut(s) 260, 304
TauI GCSGC 7 cut(s) 239, 276, 345, 363, 407, 463, 584
TfiI GAWTC 2 cut(s) 22, 553
Tru1I TTAA 2 cut(s) 207, 366
Tru9I TTAA 2 cut(s) 207, 366
TscAI CASTG 1 cut(s) 457
TseI GCWGC 4 cut(s) 157, 317, 407, 625
TspMI CCCGGG 1 cut(s) 48
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 421
VpaK11BI GGWCC 2 cut(s) 417, 598
XbaI TCTAGA 2 cut(s) 59, 556
XmaI CCCGGG 1 cut(s) 48
XmiI GTMKAC 2 cut(s) 8, 425
XspI CTAG 2 cut(s) 60, 557
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.