Prupe.1G115100_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0009174
Physical Location & Seq
Reverse (-)
9110992 .. 9113837
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G115100.1

Sequence Viewer

Length: 666 bp
ATGGCGTCCACTCTGATTTCCACTCCTATTACAAACTCCGATCGAGCTCGAGACTCTTTTAGAAGGAAAAAGAAGAAGAAAATCCAAGCCAAACAAGACCACCAGCAGCAGCAAGAAGCCCAGAGCCACACCAAATGGAAATCCGAGGCCCAGCAGCAGCTCTACTCTTCCAAGCTCCTTCAAGCGCTCAGTCAAGTCTCCATTAACCCACCCAACACCGCTAACACCAACACCAACGCCAACCCCTCCTCTTCTTCTCCTCCGCGCCGCGGCAGAGCCGTGCGCGAAGCCGCCGACAGAGTTCTCGCCGTCGCAGCCAAGGGCAGGACGCGCTGGAGCCGCGCCATTCTCACCAGCCGCCTAAAAATCAAGTTCCGGCAGCATAAACGACAGAGATCCGCCGCTGCAGCGTCGGGTACCGGTTCGACCCGACCCAGGAAGCCCAAGTTCAGCGTTTACCGGCTGAAAGGCAAGGGTTTGCCAGCTGTGCAGAAGAAAGTCCGGGTTCTGGGCCGGTTGGTTCCCGGTTGCCGAAAGCAACCGTTGCCGGTCATTCTAGAAGAAGCCACTGATTACATCGCAGCTCTGGAGATGCAGGTCCGGGCCATGAGCCGGCTCGCCCAGCTGCTCTCCGGTTCAACTTCTGGCGCCGCCGGCTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.33

Weight (kDa)

11.73

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 416, 647
AccII CGCG 5 cut(s) 265, 270, 285, 331, 342
AclWI GGATC 1 cut(s) 390
AcyI GRCGYC 2 cut(s) 5, 648
AfaI GTAC 1 cut(s) 418
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 5 cut(s) 269, 324, 435, 508, 612
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 2 cut(s) 182, 639
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 6 cut(s) 47, 160, 175, 485, 584, 625
AluI AGCT 6 cut(s) 47, 160, 175, 485, 584, 625
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 45, 202
AlwI GGATC 1 cut(s) 390
Ama87I CYCGRG 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 3 cut(s) 147, 511, 603
AsiGI ACCGGT 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 416
AspLEI GCGC 6 cut(s) 187, 267, 285, 333, 344, 650
AspS9I GGNCC 4 cut(s) 148, 511, 598, 603
AsuC2I CCSGG 3 cut(s) 503, 525, 602
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 598
BanI GGYRCC 2 cut(s) 416, 647
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BceAI ACGGC 2 cut(s) 263, 293
BciT130I CCWGG 1 cut(s) 436
BcnI CCSGG 3 cut(s) 503, 525, 602
BcoDI GTCTC 2 cut(s) 45, 202
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 2 cut(s) 188, 651
BfuAI ACCTGC 1 cut(s) 586
Bme1390I CCNGG 4 cut(s) 436, 503, 525, 602
Bme18I GGWCC 1 cut(s) 598
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 4 cut(s) 148, 511, 598, 603
BmiI GGNNCC 5 cut(s) 338, 418, 522, 649, 658
BmrFI CCNGG 4 cut(s) 436, 503, 525, 602
BmsI GCATC 1 cut(s) 582
BpmI CTGGAG 2 cut(s) 355, 608
BpuMI CCSGG 3 cut(s) 503, 525, 602
BsaHI GRCGYC 2 cut(s) 5, 648
BsaJI CCNNGG 4 cut(s) 144, 268, 318, 434
BsaWI WCCGGW 2 cut(s) 419, 632
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 324, 435, 508, 612
Bse118I RCCGGY 6 cut(s) 419, 459, 513, 547, 612, 653
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 4 cut(s) 144, 268, 318, 434
BseLI CCNNNNNNNGG 5 cut(s) 269, 324, 435, 508, 612
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 238, 249
BseYI CCCAGC 2 cut(s) 150, 621
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 5 cut(s) 265, 270, 285, 331, 342
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 3 cut(s) 149, 513, 605
BshNI GGYRCC 2 cut(s) 416, 647
BshTI ACCGGT 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 48
BslI CCNNNNNNNGG 5 cut(s) 269, 324, 435, 508, 612
BsmAI GTCTC 2 cut(s) 45, 202
BsnI GGCC 3 cut(s) 149, 513, 605
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 40, 395
BspANI GGCC 3 cut(s) 149, 513, 605
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 5 cut(s) 265, 270, 285, 331, 342
BspLI GGNNCC 5 cut(s) 338, 418, 522, 649, 658
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 390
BspT107I GGYRCC 2 cut(s) 416, 647
BsrFI RCCGGY 6 cut(s) 419, 459, 513, 547, 612, 653
BssAI RCCGGY 6 cut(s) 419, 459, 513, 547, 612, 653
BssECI CCNNGG 4 cut(s) 144, 268, 318, 434
BssMI GATC 2 cut(s) 40, 395
BssNI GRCGYC 2 cut(s) 5, 648
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 543
Bst6I CTCTTC 2 cut(s) 172, 256
BstACI GRCGYC 2 cut(s) 5, 648
BstAPI GCANNNNNTGC 1 cut(s) 544
BstC8I GCNNGC 4 cut(s) 483, 614, 618, 655
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 268
BstFNI CGCG 5 cut(s) 265, 270, 285, 331, 342
BstH2I RGCGCY 2 cut(s) 188, 651
BstHHI GCGC 6 cut(s) 187, 267, 285, 333, 344, 650
BstKTI GATC 2 cut(s) 43, 398
BstMAI GTCTC 2 cut(s) 45, 202
BstMBI GATC 2 cut(s) 40, 395
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 8 cut(s) 314, 330, 339, 407, 487, 544, 622, 654
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 4 cut(s) 434, 501, 523, 600
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 5 cut(s) 265, 270, 285, 331, 342
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 3 cut(s) 149, 513, 605
BtgI CCRYGG 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 4 cut(s) 483, 614, 618, 655
CfoI GCGC 6 cut(s) 187, 267, 285, 333, 344, 650
Cfr10I RCCGGY 6 cut(s) 419, 459, 513, 547, 612, 653
Cfr13I GGNCC 4 cut(s) 148, 511, 598, 603
Cfr42I CCGCGG 1 cut(s) 271
CseI GACGC 2 cut(s) 337, 399
Csp6I GTAC 1 cut(s) 417
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 1 cut(s) 188
DinI GGCGCC 1 cut(s) 649
DpnI GATC 2 cut(s) 42, 397
DpnII GATC 2 cut(s) 40, 395
Eam1104I CTCTTC 2 cut(s) 172, 256
EarI CTCTTC 2 cut(s) 172, 256
EciI GGCGGA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 598
Eco47III AGCGCT 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 434
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 49
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 610
FaiI YATR 2 cut(s) 384, 608
FatI CATG 1 cut(s) 606
FriOI GRGCYC 1 cut(s) 49
FspBI CTAG 1 cut(s) 557
GlaI GCGC 6 cut(s) 186, 266, 284, 332, 343, 649
GsaI CCCAGC 2 cut(s) 154, 625
GsuI CTGGAG 2 cut(s) 355, 608
HaeII RGCGCY 2 cut(s) 188, 651
HaeIII GGCC 3 cut(s) 149, 513, 605
HgaI GACGC 2 cut(s) 337, 399
HhaI GCGC 6 cut(s) 187, 267, 285, 333, 344, 650
Hin1I GRCGYC 2 cut(s) 5, 648
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 6 cut(s) 185, 265, 283, 331, 342, 648
HinP1I GCGC 6 cut(s) 185, 265, 283, 331, 342, 648
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 9, 457
Hpy188I TCNGA 3 cut(s) 15, 40, 145
Hpy188III TCNNGA 3 cut(s) 50, 557, 587
Hpy8I GTNNAC 2 cut(s) 9, 457
Hpy99I CGWCG 2 cut(s) 314, 415
HpyAV CCTTC 2 cut(s) 57, 188
HpyCH4III ACNGT 1 cut(s) 543
HpyCH4V TGCA 3 cut(s) 407, 490, 595
HpyF10VI GCNNNNNNNGC 8 cut(s) 314, 330, 339, 407, 487, 544, 622, 654
HpyF3I CTNAG 1 cut(s) 188
Hsp92I GRCGYC 2 cut(s) 5, 648
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 6 cut(s) 185, 265, 283, 331, 342, 648
KasI GGCGCC 1 cut(s) 647
KpnI GGTACC 1 cut(s) 420
KroI GCCGGC 2 cut(s) 612, 653
KroNI GCCGGC 2 cut(s) 614, 655
KspI CCGCGG 1 cut(s) 271
Kzo9I GATC 2 cut(s) 40, 395
LmnI GCTCC 3 cut(s) 180, 336, 662
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 557
MalI GATC 2 cut(s) 42, 397
MboI GATC 2 cut(s) 40, 395
MboII GAAGA 7 cut(s) 85, 88, 159, 243, 246, 505, 572
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 648
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 4 cut(s) 139, 256, 259, 270
MroNI GCCGGC 2 cut(s) 612, 653
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 4 cut(s) 270, 404, 485, 625
MspR9I CCNGG 4 cut(s) 436, 503, 525, 602
MvaI CCWGG 1 cut(s) 436
MvnI CGCG 5 cut(s) 265, 270, 285, 331, 342
MwoI GCNNNNNNNGC 8 cut(s) 314, 330, 339, 407, 487, 544, 622, 654
NaeI GCCGGC 2 cut(s) 614, 655
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 3 cut(s) 503, 525, 602
NdeII GATC 2 cut(s) 40, 395
NgoMIV GCCGGC 2 cut(s) 612, 653
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 5 cut(s) 338, 418, 522, 649, 658
PaeR7I CTCGAG 1 cut(s) 48
PdiI GCCGGC 2 cut(s) 614, 655
PinAI ACCGGT 1 cut(s) 419
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 434
PspFI CCCAGC 2 cut(s) 150, 621
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 5 cut(s) 338, 418, 522, 649, 658
PspPI GGNCC 4 cut(s) 148, 511, 598, 603
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 395
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 2 cut(s) 485, 625
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SacI GAGCTC 1 cut(s) 49
SacII CCGCGG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 2 cut(s) 40, 395
Sau96I GGNCC 4 cut(s) 148, 511, 598, 603
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 4 cut(s) 436, 503, 525, 602
SduI GDGCHC 1 cut(s) 49
SetI ASST 7 cut(s) 49, 162, 177, 487, 586, 600, 627
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 48
Sfr303I CCGCGG 1 cut(s) 271
SgrBI CCGCGG 1 cut(s) 271
SinI GGWCC 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
SspDI GGCGCC 1 cut(s) 647
SspMI CTAG 1 cut(s) 557
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 4 cut(s) 434, 501, 523, 600
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 43, 49, 425
TauI GCSGC 7 cut(s) 270, 273, 293, 342, 360, 404, 653
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 574
TspRI CASTG 1 cut(s) 574
VpaK11BI GGWCC 1 cut(s) 598
XbaI TCTAGA 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 48
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.