pycom13g12970

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009174
Physical Location & Seq
Reverse (-)
9186912 .. 9188980
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g12970.1

Sequence Viewer

Length: 1008 bp
ATGGCGTTTGTTGGGTTAAGTTTCCTCTTCAATCAAATTTTAAATTATTTTATTCGGTGGCCTTCCTTTTCATTGGCAGTGCGTTTAAGGAAATCACGCGTGCTGTCATCTGATTCCTTTATAAGCCTCTTCCCACCGTTCCTCCTCTCCTTAATAGTCCCCACCTTCTCTCTCTCTACTCTCTCTCTCCATCCCTTCCACCCGCAACCACCTCCGTTCCGTTCCGTTCTCTCTCTCTTTCTCATTCCTCTGTTGGAACAGAAAACCGAAATCCCCTTTCAAATACCATTCCAATTCCTCCGTTTGATTCCGAATCCTCACACTCTCAATTTAAGGGGAGAATCAAAATCCATGGCGTCGACTCTGATTTCGAATGCCGTAGCCACCCCCGAACGAGCCCGGGATCCTTCTAGAAGGAAAAAGAAGAAGAAAATCCAATCCAAACAAGACCACCTCCACCACCAAGAACCCGCCAACAGCCACACCAAGTGGAAGTCCGAGGCACAGCAGCACCTCTACTCCTCCAAGCTCCTCCACGCCCTCAACCAAGTCTCCATTAACCCCGCACCCGACTCCTCCGCCCCCGCCGCCAACTCCTCCGCTTCCACTTCTACTCCGCCACGCGGCCGAGCCGTTCGCGAGACTGCCGACAGAGTACTCGCCGTCGCAGCTAAGGGTAAGACCCGCTGGAGCCGCGCCATTCTCACCAGCCGCCTTAAAATCAAGTTCCGCCAGCATAAACGGCAGAGATCCGCCGCTGCGTCAGGGACCGGGTCGACCCGGCCCAGGAAGACCAAGTTCAGTGTTCAGCGGCTGAAAGGGAGGGGCTTGCCGGCCGTGCAGAAGAAAGTACGGGTTCTCGGCCGTTTGGTTCCCGGTTGCCGGAAACAGCCGTTGCCGGTGATTCTAGAAGAAGCGACTGATTACATCGCGGCTCTGGAGATGCAGGTCCGAGCCATGAGCCGGCTCACTCAGCTGCTCTCCGGTTCAACTTCCGGCTCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

37.41

Weight (kDa)

11.67

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 168 - 238 1.4e-09 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06590 AT3G06590 AT3G06590 AT3G06590 AT3G17100 AT3G17100
fragaria_vesca FvH4_4g20270
malus_domestica MD13G1150900.v1.1 MD16G1151400.v1.1
prunus_persica Prupe.1G115100_v2.0.a1
pyrus_communis pycom13g12970
rosa_chinensis RchiOBHm_Chr4g0425781
rosa_laevigata RLG00000007340
rosa_multiflora Rmu_sc0002094.1_g000005
rosa_roxburghii Rroxscaffold_5G00367770
rosa_rugosa Rorug04G0206100
rosa_samantha Rh4AG263200 Rh4BG269200 Rh4CG281500 Rh4DG265500
rosa_wichuraiana Rw4G022720 Rw6G028810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 937
AccI GTMKAC 2 cut(s) 359, 776
AccII CGCG 5 cut(s) 99, 624, 639, 696, 932
AclWI GGATC 3 cut(s) 398, 411, 744
AcoI YGGCCR 3 cut(s) 625, 834, 862
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 489
AfaI GTAC 2 cut(s) 657, 852
AfiI CCNNNNNNNGG 4 cut(s) 623, 786, 882, 963
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 3 cut(s) 31, 281, 990
AjnI CCWGG 1 cut(s) 785
AluBI AGCT 3 cut(s) 529, 671, 976
AluI AGCT 3 cut(s) 529, 671, 976
Alw26I GTCTC 2 cut(s) 556, 635
AlwI GGATC 3 cut(s) 398, 411, 744
AlwNI CAGNNNCTG 1 cut(s) 814
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 5 cut(s) 59, 625, 782, 834, 862
ApeKI GCWGC 4 cut(s) 508, 668, 758, 976
ApoI RAATTY 1 cut(s) 36
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 3 cut(s) 768, 783, 949
AsuC2I CCSGG 5 cut(s) 400, 401, 772, 781, 876
AsuHPI GGTGA 2 cut(s) 697, 913
AsuII TTCGAA 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 768, 949
BamHI GGATCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 797
BbvI GCAGC 4 cut(s) 520, 680, 745, 963
BccI CCATC 1 cut(s) 198
BceAI ACGGC 7 cut(s) 362, 617, 647, 758, 821, 849, 877
BciT130I CCWGG 1 cut(s) 787
BcnI CCSGG 5 cut(s) 400, 401, 772, 781, 876
BcoDI GTCTC 2 cut(s) 556, 635
BfaI CTAG 2 cut(s) 411, 908
BfuAI ACCTGC 1 cut(s) 937
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 6 cut(s) 400, 401, 772, 781, 787, 876
Bme18I GGWCC 2 cut(s) 768, 949
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 3 cut(s) 768, 783, 949
BmiI GGNNCC 5 cut(s) 405, 692, 769, 873, 1000
BmrFI CCNGG 6 cut(s) 400, 401, 772, 781, 787, 876
BmsI GCATC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 797
BpmI CTGGAG 2 cut(s) 709, 959
Bpu10I CCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 1 cut(s) 371
BpuMI CCSGG 5 cut(s) 400, 401, 772, 781, 876
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 4 cut(s) 351, 399, 498, 785
BsaWI WCCGGW 1 cut(s) 983
BsaXI ACNNNNNCTCC 8 cut(s) 126, 156, 503, 533, 536, 566, 598, 628
Bsc4I CCNNNNNNNGG 4 cut(s) 623, 786, 882, 963
Bse118I RCCGGY 3 cut(s) 832, 898, 963
BseBI CCWGG 1 cut(s) 787
BseDI CCNNGG 4 cut(s) 351, 399, 498, 785
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 4 cut(s) 623, 786, 882, 963
BseMII CTCAG 1 cut(s) 986
BseRI GAGGAG 5 cut(s) 134, 511, 521, 565, 586
BseX3I CGGCCG 3 cut(s) 625, 834, 862
BseXI GCAGC 4 cut(s) 520, 680, 745, 963
BsgI GTGCAG 1 cut(s) 860
Bsh1236I CGCG 5 cut(s) 99, 624, 639, 696, 932
Bsh1285I CGRYCG 3 cut(s) 628, 837, 865
BshFI GGCC 5 cut(s) 61, 627, 784, 836, 864
BsiEI CGRYCG 3 cut(s) 628, 837, 865
BsiHKCI CYCGRG 1 cut(s) 399
BslFI GGGAC 2 cut(s) 143, 781
BslI CCNNNNNNNGG 4 cut(s) 623, 786, 882, 963
BsmAI GTCTC 2 cut(s) 556, 635
BsmFI GGGAC 2 cut(s) 143, 781
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 5 cut(s) 61, 627, 784, 836, 864
BsoBI CYCGRG 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 403, 749
Bsp19I CCATGG 1 cut(s) 351
Bsp68I TCGCGA 1 cut(s) 639
BspANI GGCC 5 cut(s) 61, 627, 784, 836, 864
BspCNI CTCAG 1 cut(s) 985
BspFNI CGCG 5 cut(s) 99, 624, 639, 696, 932
BspLI GGNNCC 5 cut(s) 405, 692, 769, 873, 1000
BspMI ACCTGC 1 cut(s) 937
BspPI GGATC 3 cut(s) 398, 411, 744
BspT104I TTCGAA 1 cut(s) 371
BsrFI RCCGGY 3 cut(s) 832, 898, 963
BssAI RCCGGY 3 cut(s) 832, 898, 963
BssECI CCNNGG 4 cut(s) 351, 399, 498, 785
BssMI GATC 2 cut(s) 403, 749
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 787
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 2 cut(s) 32, 134
BstACI GRCGYC 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 371
BstC8I GCNNGC 5 cut(s) 101, 734, 830, 834, 965
BstDEI CTNAG 2 cut(s) 672, 972
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 5 cut(s) 99, 624, 639, 696, 932
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 2 cut(s) 406, 752
BstMAI GTCTC 2 cut(s) 556, 635
BstMBI GATC 2 cut(s) 403, 749
BstMCI CGRYCG 3 cut(s) 628, 837, 865
BstMWI GCNNNNNNNGC 6 cut(s) 587, 668, 693, 742, 838, 973
BstNI CCWGG 1 cut(s) 787
BstSCI CCNGG 6 cut(s) 398, 399, 770, 779, 785, 874
BstUI CGCG 5 cut(s) 99, 624, 639, 696, 932
BstV1I GCAGC 4 cut(s) 520, 680, 745, 963
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 2 cut(s) 403, 749
BstYI RGATCY 2 cut(s) 403, 749
BstZI CGGCCG 3 cut(s) 625, 834, 862
BsuRI GGCC 5 cut(s) 61, 627, 784, 836, 864
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 913
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 808
BtuMI TCGCGA 1 cut(s) 639
BveI ACCTGC 1 cut(s) 937
Cac8I GCNNGC 5 cut(s) 101, 734, 830, 834, 965
CaiI CAGNNNCTG 1 cut(s) 814
CfoI GCGC 1 cut(s) 698
Cfr10I RCCGGY 3 cut(s) 832, 898, 963
Cfr13I GGNCC 3 cut(s) 768, 783, 949
Cfr9I CCCGGG 1 cut(s) 399
CseI GACGC 2 cut(s) 345, 750
Csp6I GTAC 2 cut(s) 656, 851
CviAII CATG 2 cut(s) 352, 958
CviQI GTAC 2 cut(s) 656, 851
DdeI CTNAG 2 cut(s) 672, 972
DpnI GATC 2 cut(s) 405, 751
DpnII GATC 2 cut(s) 403, 749
DraI TTTAAA 1 cut(s) 42
DraIII CACNNNGTG 1 cut(s) 489
EaeI YGGCCR 3 cut(s) 625, 834, 862
EagI CGGCCG 3 cut(s) 625, 834, 862
Eam1104I CTCTTC 2 cut(s) 32, 134
EarI CTCTTC 2 cut(s) 32, 134
EciI GGCGGA 4 cut(s) 568, 606, 719, 742
EclXI CGGCCG 3 cut(s) 625, 834, 862
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 768, 949
Eco52I CGGCCG 3 cut(s) 625, 834, 862
Eco88I CYCGRG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 785
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 355, 961
FaiI YATR 4 cut(s) 122, 353, 738, 959
FaqI GGGAC 2 cut(s) 143, 781
FatI CATG 2 cut(s) 351, 957
FauI CCCGC 5 cut(s) 210, 478, 571, 592, 692
FblI GTMKAC 2 cut(s) 359, 776
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 400
FspBI CTAG 2 cut(s) 411, 908
GlaI GCGC 1 cut(s) 697
GsuI CTGGAG 2 cut(s) 709, 959
HaeIII GGCC 5 cut(s) 61, 627, 784, 836, 864
HgaI GACGC 2 cut(s) 345, 750
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 2 cut(s) 355, 961
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 2 cut(s) 360, 777
HindII GTYRAC 2 cut(s) 360, 777
HinfI GANTC 7 cut(s) 113, 307, 313, 341, 361, 572, 904
HphI GGTGA 2 cut(s) 697, 913
Hpy166II GTNNAC 2 cut(s) 360, 777
Hpy188I TCNGA 5 cut(s) 112, 312, 366, 499, 953
Hpy188III TCNNGA 4 cut(s) 411, 638, 908, 938
Hpy8I GTNNAC 2 cut(s) 360, 777
Hpy99I CGWCG 2 cut(s) 361, 668
HpyAV CCTTC 5 cut(s) 72, 175, 205, 408, 417
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 841, 946
HpyF10VI GCNNNNNNNGC 6 cut(s) 587, 668, 693, 742, 838, 973
HpyF3I CTNAG 2 cut(s) 672, 972
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 2 cut(s) 355, 961
HspAI GCGC 1 cut(s) 696
KroI GCCGGC 2 cut(s) 832, 963
KroNI GCCGGC 2 cut(s) 834, 965
Kzo9I GATC 2 cut(s) 403, 749
LmnI GCTCC 3 cut(s) 534, 690, 1004
Lsp1109I GCAGC 4 cut(s) 520, 680, 745, 963
LweI GCATC 1 cut(s) 933
MaeI CTAG 2 cut(s) 411, 908
MalI GATC 2 cut(s) 405, 751
MboI GATC 2 cut(s) 403, 749
MboII GAAGA 7 cut(s) 19, 121, 436, 439, 802, 856, 923
MflI RGATCY 2 cut(s) 403, 749
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 4 cut(s) 36, 43, 293, 328
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 355, 566
MmeI TCCRAC 1 cut(s) 234
MroNI GCCGGC 2 cut(s) 832, 963
MseI TTAA 7 cut(s) 17, 41, 86, 152, 332, 558, 717
MspA1I CMGCKG 4 cut(s) 687, 758, 811, 976
MspR9I CCNGG 6 cut(s) 400, 401, 772, 781, 787, 876
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 787
MvnI CGCG 5 cut(s) 99, 624, 639, 696, 932
MwoI GCNNNNNNNGC 6 cut(s) 587, 668, 693, 742, 838, 973
NaeI GCCGGC 2 cut(s) 834, 965
NciI CCSGG 5 cut(s) 400, 401, 772, 781, 876
NcoI CCATGG 1 cut(s) 351
NdeII GATC 2 cut(s) 403, 749
NgoMIV GCCGGC 2 cut(s) 832, 963
NlaIII CATG 2 cut(s) 355, 961
NlaIV GGNNCC 5 cut(s) 405, 692, 769, 873, 1000
NmeAIII GCCGAG 2 cut(s) 653, 840
NruI TCGCGA 1 cut(s) 639
NspV TTCGAA 1 cut(s) 371
PctI GAATGC 1 cut(s) 379
PdiI GCCGGC 2 cut(s) 834, 965
PfeI GAWTC 5 cut(s) 113, 307, 313, 341, 904
PflFI GACNNNGTC 1 cut(s) 772
PleI GAGTC 2 cut(s) 355, 566
PpsI GAGTC 2 cut(s) 355, 566
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 785
PspGI CCWGG 1 cut(s) 785
PspN4I GGNNCC 5 cut(s) 405, 692, 769, 873, 1000
PspPI GGNCC 3 cut(s) 768, 783, 949
PstNI CAGNNNCTG 1 cut(s) 814
PsuI RGATCY 2 cut(s) 403, 749
PsyI GACNNNGTC 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 976
RruI TCGCGA 1 cut(s) 639
RsaI GTAC 2 cut(s) 657, 852
RsaNI GTAC 2 cut(s) 656, 851
SalI GTCGAC 2 cut(s) 358, 775
SaqAI TTAA 7 cut(s) 17, 41, 86, 152, 332, 558, 717
Sau3AI GATC 2 cut(s) 403, 749
Sau96I GGNCC 3 cut(s) 768, 783, 949
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 2 cut(s) 355, 566
ScrFI CCNGG 6 cut(s) 400, 401, 772, 781, 787, 876
SduI GDGCHC 1 cut(s) 400
SetI ASST 8 cut(s) 167, 214, 456, 516, 531, 673, 951, 978
SfaNI GCATC 1 cut(s) 933
SfuI TTCGAA 1 cut(s) 371
SinI GGWCC 2 cut(s) 768, 949
SmaI CCCGGG 1 cut(s) 401
Sse9I AATT 4 cut(s) 36, 43, 293, 328
SspMI CTAG 2 cut(s) 411, 908
StyD4I CCNGG 6 cut(s) 398, 399, 770, 779, 785, 874
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 3 cut(s) 359, 371, 776
TasI AATT 4 cut(s) 36, 43, 293, 328
TatI WGTACW 1 cut(s) 655
TauI GCSGC 7 cut(s) 590, 627, 696, 714, 758, 814, 935
TfiI GAWTC 5 cut(s) 113, 307, 313, 341, 904
Tru1I TTAA 7 cut(s) 17, 41, 86, 152, 332, 558, 717
Tru9I TTAA 7 cut(s) 17, 41, 86, 152, 332, 558, 717
TscAI CASTG 2 cut(s) 84, 808
TseI GCWGC 4 cut(s) 508, 668, 758, 976
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 4 cut(s) 204, 209, 214, 290
TspMI CCCGGG 1 cut(s) 399
TspRI CASTG 2 cut(s) 84, 808
Tth111I GACNNNGTC 1 cut(s) 772
VpaK11BI GGWCC 2 cut(s) 768, 949
XapI RAATTY 1 cut(s) 36
XbaI TCTAGA 2 cut(s) 410, 907
XmaI CCCGGG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 359, 776
XspI CTAG 2 cut(s) 411, 908
ZrmI AGTACT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.