AT3G07670

Rubisco LSMT substrate-binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2451564 .. 2455100
3537 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07670.2

Sequence Viewer

Length: 1515 bp
ATGGCAAAAGCTTGCCTCTTGCAGTCTACTCTACTCCCAGCTTACTCTCCACTTCACAAACTTCGTAATCAAAACATCACCCTCTCTTTCTCACCGCTTCCGCTGTCCCGATGCCGTCCCGGAATCCACTGCTCAGTTTCGGCCGGTGAGACTACAATACAATCCATGGAGGAAGCTCCGAAGATATCATGGGGATGCGAGATTGATTCACTTGAGAACGCTACTTCTCTTCAGAACTGGCTCTCTGATTCAGGTCTCCCTCCGCAGAAAATGGCTATTGATAGAGTCGACATCGGTGAGCGAGGCCTCGTCGCTTCACAGAATCTCAGAAAAGGAGAGAAATTGCTCTTCGTTCCTCCTTCTCTCGTCATCAGTGCTGATTCCGAATGGACCAACGCAGAAGCTGGTGAAGTGATGAAACGTTATGATGTTCCAGATTGGCCTTTGCTCGCCACTTATCTTATAAGTGAAGCAAGTCTTCAGAAAAGCTCAAGATGGTTTAACTATATCTCAGCTCTTCCCCGACAACCTTACTCGCTTTTATACTGGACTCGGACAGAGCTTGATATGTACTTGGAAGCTTCTCAGATTCGAGAACGGGCAATTGAAAGAATCACCAATGTTGTTGGAACTTATGAAGATCTAAGAAGCAGGATATTTTCCAAACACCCTCAACTTTTCCCTAAAGAGGTTTTCAATGATGAGACATTTAAGTGGTCTTTTGGAATCCTATTCTCACGGTTGGTGCGGTTGCCTTCTATGGATGGAAGATTTGCCTTAGTTCCATGGGCAGATATGCTTAATCATAATTGTGAGGTTGAGACGTTCCTGGATTATGATAAATCTTCAAAAGGAGTTGTCTTTACAACAGATCGACCATATCAACCAGGTGAGCAGGTTTTCATATCCTATGGGAATAAATCTAACGGAGAGCTATTGTTATCTTATGGGTTTGTTCCCAGAGAAGGAACCAATCCTAGTGATTCAGTAGAACTAGCATTATCACTTAGGAAAAACGATAAGTGTTACGAGGAAAAGCTGGATGCTTTAAAGAAACACGGATTATCGACACCTCAATGCTTTCCCGTAAGGATAACGGGTTGGCCAATGGAGCTAATGGCATATGCTTATCTTGTGGTGAGCCCTCCAGATATGAGAAACAACTTTGAAGAGATGGCGAAAGCTGCTTCAAATAAGACATCAACAAAGAATGATCTAAAATATCCTGAAATCGAGGAAGACGCATTGCAGTTCATACTGGACTCATGCGAAACAAGCATATCAAAGTACAGCCGATTTCTAAAGGAAAGTGGATCAATGGATTTGGACATAACATCTCCAAAACAGTTGAACCGAAAAGCGTTTCTGAAACAGCTAGCTGTAGACTTGTCCACTAGTGAGCGCAGGATACTGTACCGTGCTCAATACATTCTGAGGAGGAGACTGAGAGATATCAGAAGTGGTGAGCTGAAGGCTCTACGGCTCTTCAGTGGACTTAGGAACTTCTTCAAGTGA
Functional Annotation

Protein Analysis

504

Amino Acids

57.61

Weight (kDa)

8.25

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 116 - 167 3.4e-07 SET domain
Rubis-subs-bind PF09273 200 - 333 1.7e-23 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 886
AccI GTMKAC 3 cut(s) 26, 288, 1383
AciI CCGC 4 cut(s) 95, 101, 263, 748
AclI AACGTT 1 cut(s) 421
AclWI GGATC 1 cut(s) 1321
AcoI YGGCCR 2 cut(s) 141, 1103
AcuI CTGAAG 4 cut(s) 215, 464, 1471, 1490
AfaI GTAC 3 cut(s) 572, 1289, 1415
AfiI CCNNNNNNNGG 2 cut(s) 688, 965
AgsI TTSAA 7 cut(s) 608, 697, 849, 1169, 1191, 1351, 1510
AhlI ACTAGT 1 cut(s) 1394
AjnI CCWGG 2 cut(s) 828, 886
Alw21I GWGCWC 1 cut(s) 1423
Alw26I GTCTC 5 cut(s) 143, 260, 698, 815, 1435
AlwI GGATC 1 cut(s) 1321
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 4 cut(s) 141, 304, 440, 1103
ApeKI GCWGC 1 cut(s) 1184
Asp700I GAANNNNTTC 1 cut(s) 1505
AspLEI GCGC 1 cut(s) 1404
AspS9I GGNCC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 9 cut(s) 70, 84, 158, 308, 419, 607, 902, 1150, 1475
AsuNHI GCTAGC 1 cut(s) 1375
AvaII GGWCC 1 cut(s) 390
BalI TGGCCA 1 cut(s) 1105
BanII GRGCYC 1 cut(s) 1145
BbsI GAAGAC 2 cut(s) 470, 1245
Bbv12I GWGCWC 1 cut(s) 1423
BbvI GCAGC 1 cut(s) 1171
BccI CCATC 3 cut(s) 489, 758, 1168
BceAI ACGGC 2 cut(s) 99, 1496
BciT130I CCWGG 2 cut(s) 830, 888
BciVI GTATCC 1 cut(s) 1401
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 5 cut(s) 143, 260, 698, 815, 1435
BcuI ACTAGT 1 cut(s) 1394
BfaI CTAG 4 cut(s) 978, 995, 1376, 1395
BfmI CTRYAG 1 cut(s) 1380
BfuAI ACCTGC 1 cut(s) 886
BfuI GTATCC 1 cut(s) 1401
BglII AGATCT 1 cut(s) 640
BisI GCNGC 1 cut(s) 1185
BlsI GCNGC 1 cut(s) 1186
Bme1390I CCNGG 3 cut(s) 120, 830, 888
Bme18I GGWCC 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 390
BmiI GGNNCC 1 cut(s) 970
BmrFI CCNGG 3 cut(s) 120, 830, 888
BmsI GCATC 3 cut(s) 101, 185, 1033
BmtI GCTAGC 1 cut(s) 1379
BpiI GAAGAC 2 cut(s) 470, 1245
BpmI CTGGAG 1 cut(s) 1131
BpuEI CTTGAG 2 cut(s) 233, 475
BpuMI CCSGG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 165, 785
Bsc4I CCNNNNNNNGG 2 cut(s) 688, 965
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 3 cut(s) 242, 551, 1263
Bse3DI GCAATG 1 cut(s) 1244
BseBI CCWGG 2 cut(s) 830, 888
BseDI CCNNGG 2 cut(s) 165, 785
BseGI GGATG 3 cut(s) 200, 769, 1048
BseLI CCNNNNNNNGG 2 cut(s) 688, 965
BseMI GCAATG 1 cut(s) 1244
BseMII CTCAG 6 cut(s) 147, 340, 525, 599, 1424, 1436
BseNI ACTGG 3 cut(s) 242, 551, 1263
BseRI GAGGAG 2 cut(s) 1450, 1453
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 1171
BseYI CCCAGC 1 cut(s) 37
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 143, 306, 442, 1105
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 1423
BsiSI CCGG 2 cut(s) 120, 144
BslFI GGGAC 2 cut(s) 91, 102
BslI CCNNNNNNNGG 2 cut(s) 688, 965
BsmAI GTCTC 5 cut(s) 143, 260, 698, 815, 1435
BsmBI CGTCTC 1 cut(s) 815
BsmFI GGGAC 2 cut(s) 91, 102
BsnI GGCC 4 cut(s) 143, 306, 442, 1105
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 1145, 1423
Bsp143I GATC 4 cut(s) 640, 871, 1213, 1313
Bsp19I CCATGG 2 cut(s) 165, 785
BspACI CCGC 4 cut(s) 95, 101, 263, 748
BspANI GGCC 4 cut(s) 143, 306, 442, 1105
BspCNI CTCAG 6 cut(s) 146, 339, 524, 598, 1425, 1437
BspLI GGNNCC 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 886
BspOI GCTAGC 1 cut(s) 1379
BspPI GGATC 1 cut(s) 1321
BspQI GCTCTTC 3 cut(s) 353, 522, 1490
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 1244
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 3 cut(s) 242, 551, 1263
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 165, 785
BssMI GATC 4 cut(s) 640, 871, 1213, 1313
BssT1I CCWWGG 2 cut(s) 165, 785
Bst2UI CCWGG 2 cut(s) 830, 888
Bst4CI ACNGT 4 cut(s) 741, 1347, 1413, 1418
Bst6I CTCTTC 5 cut(s) 234, 353, 522, 1164, 1490
BstC8I GCNNGC 3 cut(s) 13, 450, 1377
BstDSI CCRYGG 2 cut(s) 165, 785
BstF5I GGATG 3 cut(s) 200, 769, 1048
BstHHI GCGC 1 cut(s) 1404
BstKTI GATC 4 cut(s) 643, 874, 1216, 1316
BstMAI GTCTC 5 cut(s) 143, 260, 698, 815, 1435
BstMBI GATC 4 cut(s) 640, 871, 1213, 1313
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 1111, 1184, 1275
BstNI CCWGG 2 cut(s) 830, 888
BstSCI CCNGG 3 cut(s) 118, 828, 886
BstSFI CTRYAG 1 cut(s) 1380
BstV1I GCAGC 1 cut(s) 1171
BstV2I GAAGAC 2 cut(s) 470, 1245
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BstZI CGGCCG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 1401
BsuRI GGCC 4 cut(s) 143, 306, 442, 1105
BtgI CCRYGG 2 cut(s) 165, 785
BtsCI GGATG 3 cut(s) 200, 769, 1048
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 3 cut(s) 127, 379, 1495
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 13, 450, 1377
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 1404
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 390
CseI GACGC 1 cut(s) 1250
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 3 cut(s) 571, 1288, 1414
CviAII CATG 4 cut(s) 166, 189, 786, 1266
CviQI GTAC 3 cut(s) 571, 1288, 1414
DpnI GATC 4 cut(s) 642, 873, 1215, 1315
DpnII GATC 4 cut(s) 640, 871, 1213, 1313
DraI TTTAAA 1 cut(s) 1050
EaeI YGGCCR 2 cut(s) 141, 1103
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 5 cut(s) 234, 353, 522, 1164, 1490
EarI CTCTTC 5 cut(s) 234, 353, 522, 1164, 1490
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 165, 785
Eco147I AGGCCT 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 1145
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 2 cut(s) 186, 1453
Eco47I GGWCC 1 cut(s) 390
Eco52I CGGCCG 1 cut(s) 141
Eco57I CTGAAG 4 cut(s) 215, 464, 1471, 1490
EcoRII CCWGG 2 cut(s) 828, 886
EcoRV GATATC 2 cut(s) 186, 1453
EcoT14I CCWWGG 2 cut(s) 165, 785
EcoT38I GRGCYC 1 cut(s) 1145
ErhI CCWWGG 2 cut(s) 165, 785
Esp3I CGTCTC 1 cut(s) 815
FaeI CATG 4 cut(s) 169, 192, 789, 1269
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 2 cut(s) 91, 102
FatI CATG 4 cut(s) 165, 188, 785, 1265
FauNDI CATATG 1 cut(s) 1123
FblI GTMKAC 3 cut(s) 26, 288, 1383
Fnu4HI GCNGC 1 cut(s) 1185
FokI GGATG 3 cut(s) 207, 776, 1055
FriOI GRGCYC 1 cut(s) 1145
Fsp4HI GCNGC 1 cut(s) 1185
FspBI CTAG 4 cut(s) 978, 995, 1376, 1395
GlaI GCGC 1 cut(s) 1403
GluI GCNGC 1 cut(s) 1185
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 4 cut(s) 143, 306, 442, 1105
HapII CCGG 2 cut(s) 120, 144
HgaI GACGC 1 cut(s) 1250
HhaI GCGC 1 cut(s) 1404
Hin1II CATG 4 cut(s) 169, 192, 789, 1269
Hin6I GCGC 1 cut(s) 1402
HinP1I GCGC 1 cut(s) 1402
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 2 cut(s) 9, 579
HpaII CCGG 2 cut(s) 120, 144
HphI GGTGA 9 cut(s) 70, 84, 158, 308, 419, 607, 902, 1150, 1475
Hpy166II GTNNAC 5 cut(s) 27, 289, 1384, 1392, 1493
Hpy188III TCNNGA 6 cut(s) 108, 434, 492, 593, 1148, 1226
Hpy8I GTNNAC 5 cut(s) 27, 289, 1384, 1392, 1493
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 369, 765, 959, 1465
HpyCH4III ACNGT 4 cut(s) 741, 1347, 1413, 1418
HpyCH4IV ACGT 2 cut(s) 421, 824
HpyCH4V TGCA 2 cut(s) 22, 1249
HpyF10VI GCNNNNNNNGC 3 cut(s) 1111, 1184, 1275
HpySE526I ACGT 2 cut(s) 421, 824
Hsp92II CATG 4 cut(s) 169, 192, 789, 1269
HspAI GCGC 1 cut(s) 1402
Kzo9I GATC 4 cut(s) 640, 871, 1213, 1313
LguI GCTCTTC 3 cut(s) 353, 522, 1490
LmnI GCTCC 2 cut(s) 181, 1111
Lsp1109I GCAGC 1 cut(s) 1171
LweI GCATC 3 cut(s) 101, 185, 1033
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 4 cut(s) 978, 995, 1376, 1395
MaeII ACGT 2 cut(s) 421, 824
MaeIII GTNAC 1 cut(s) 1025
MalI GATC 4 cut(s) 642, 873, 1215, 1315
MboI GATC 4 cut(s) 640, 871, 1213, 1313
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 1145, 1423
MlsI TGGCCA 1 cut(s) 1105
MluCI AATT 3 cut(s) 341, 603, 808
MluNI TGGCCA 1 cut(s) 1105
MlyI GAGTC 3 cut(s) 294, 544, 1256
MmeI TCCRAC 1 cut(s) 607
Mox20I TGGCCA 1 cut(s) 1105
MroXI GAANNNNTTC 1 cut(s) 1505
MscI TGGCCA 1 cut(s) 1105
MseI TTAA 4 cut(s) 501, 711, 801, 1049
MslI CAYNNNNRTG 4 cut(s) 193, 712, 810, 1075
Msp20I TGGCCA 1 cut(s) 1105
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 120, 144
MspR9I CCNGG 3 cut(s) 120, 830, 888
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 2 cut(s) 830, 888
MwoI GCNNNNNNNGC 3 cut(s) 1111, 1184, 1275
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 2 cut(s) 165, 785
NdeI CATATG 1 cut(s) 1123
NdeII GATC 4 cut(s) 640, 871, 1213, 1313
NheI GCTAGC 1 cut(s) 1375
NlaIII CATG 4 cut(s) 169, 192, 789, 1269
NlaIV GGNNCC 1 cut(s) 970
PceI AGGCCT 1 cut(s) 306
PciSI GCTCTTC 3 cut(s) 353, 522, 1490
PdmI GAANNNNTTC 1 cut(s) 1505
PfeI GAWTC 9 cut(s) 123, 206, 248, 322, 380, 589, 612, 726, 983
PfoI TCCNGGA 2 cut(s) 118, 828
PkrI GCNGC 1 cut(s) 1186
PleI GAGTC 3 cut(s) 293, 544, 1256
PpsI GAGTC 3 cut(s) 293, 544, 1256
PsiI TTATAA 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 421
Psp6I CCWGG 2 cut(s) 828, 886
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 828, 886
PspN4I GGNNCC 1 cut(s) 970
PspPI GGNCC 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 3 cut(s) 572, 1289, 1415
RsaNI GTAC 3 cut(s) 571, 1288, 1414
RseI CAYNNNNRTG 4 cut(s) 193, 712, 810, 1075
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 3 cut(s) 353, 522, 1490
SaqAI TTAA 4 cut(s) 501, 711, 801, 1049
SatI GCNGC 1 cut(s) 1185
Sau3AI GATC 4 cut(s) 640, 871, 1213, 1313
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 3 cut(s) 294, 544, 1256
ScrFI CCNGG 3 cut(s) 120, 830, 888
SduI GDGCHC 2 cut(s) 1145, 1423
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 3 cut(s) 101, 185, 1033
SfcI CTRYAG 1 cut(s) 1380
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 4 cut(s) 193, 712, 810, 1075
SmlI CTYRAG 2 cut(s) 212, 490
SmoI CTYRAG 2 cut(s) 212, 490
SpeI ACTAGT 1 cut(s) 1394
Sse9I AATT 3 cut(s) 341, 603, 808
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 4 cut(s) 95, 101, 263, 748
SspMI CTAG 4 cut(s) 978, 995, 1376, 1395
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 118, 828, 886
StyI CCWWGG 2 cut(s) 165, 785
TaaI ACNGT 4 cut(s) 741, 1347, 1413, 1418
TaiI ACGT 2 cut(s) 424, 827
TaqI TCGA 5 cut(s) 288, 592, 874, 1067, 1233
TasI AATT 3 cut(s) 341, 603, 808
TatI WGTACW 2 cut(s) 570, 1287
TfiI GAWTC 9 cut(s) 123, 206, 248, 322, 380, 589, 612, 726, 983
Tru1I TTAA 4 cut(s) 501, 711, 801, 1049
Tru9I TTAA 4 cut(s) 501, 711, 801, 1049
TscAI CASTG 3 cut(s) 134, 379, 1495
TseI GCWGC 1 cut(s) 1184
TspDTI ATGAA 4 cut(s) 431, 651, 892, 1243
TspGWI ACGGA 2 cut(s) 942, 1074
TspRI CASTG 3 cut(s) 134, 379, 1495
VpaK11BI GGWCC 1 cut(s) 390
XmiI GTMKAC 3 cut(s) 26, 288, 1383
XmnI GAANNNNTTC 1 cut(s) 1505
XspI CTAG 4 cut(s) 978, 995, 1376, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.