Rubisco LSMT substrate-binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07670 AT3G07670 |
| fragaria_vesca | FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 |
| malus_domestica | MD17G1118300.v1.1 |
| prunus_persica | Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1 |
| pyrus_communis | pycom17g10880 |
| rosa_chinensis | RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751 |
| rosa_laevigata | RLG00000020860 |
| rosa_multiflora | Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00093510 |
| rosa_rugosa | Rorug02G0449800 |
| rosa_samantha | Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800 |
| rosa_wichuraiana | Rw2G042410 Rw2G042420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 464 |
| Acc36I | ACCTGC | 1 cut(s) | 886 |
| AccI | GTMKAC | 3 cut(s) | 26, 288, 1383 |
| AciI | CCGC | 4 cut(s) | 95, 101, 263, 748 |
| AclI | AACGTT | 1 cut(s) | 421 |
| AclWI | GGATC | 1 cut(s) | 1321 |
| AcoI | YGGCCR | 2 cut(s) | 141, 1103 |
| AcuI | CTGAAG | 4 cut(s) | 215, 464, 1471, 1490 |
| AfaI | GTAC | 3 cut(s) | 572, 1289, 1415 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 688, 965 |
| AgsI | TTSAA | 7 cut(s) | 608, 697, 849, 1169, 1191, 1351, 1510 |
| AhlI | ACTAGT | 1 cut(s) | 1394 |
| AjnI | CCWGG | 2 cut(s) | 828, 886 |
| Alw21I | GWGCWC | 1 cut(s) | 1423 |
| Alw26I | GTCTC | 5 cut(s) | 143, 260, 698, 815, 1435 |
| AlwI | GGATC | 1 cut(s) | 1321 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 404 |
| AoxI | GGCC | 4 cut(s) | 141, 304, 440, 1103 |
| ApeKI | GCWGC | 1 cut(s) | 1184 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1505 |
| AspLEI | GCGC | 1 cut(s) | 1404 |
| AspS9I | GGNCC | 1 cut(s) | 390 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 9 cut(s) | 70, 84, 158, 308, 419, 607, 902, 1150, 1475 |
| AsuNHI | GCTAGC | 1 cut(s) | 1375 |
| AvaII | GGWCC | 1 cut(s) | 390 |
| BalI | TGGCCA | 1 cut(s) | 1105 |
| BanII | GRGCYC | 1 cut(s) | 1145 |
| BbsI | GAAGAC | 2 cut(s) | 470, 1245 |
| Bbv12I | GWGCWC | 1 cut(s) | 1423 |
| BbvI | GCAGC | 1 cut(s) | 1171 |
| BccI | CCATC | 3 cut(s) | 489, 758, 1168 |
| BceAI | ACGGC | 2 cut(s) | 99, 1496 |
| BciT130I | CCWGG | 2 cut(s) | 830, 888 |
| BciVI | GTATCC | 1 cut(s) | 1401 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 5 cut(s) | 143, 260, 698, 815, 1435 |
| BcuI | ACTAGT | 1 cut(s) | 1394 |
| BfaI | CTAG | 4 cut(s) | 978, 995, 1376, 1395 |
| BfmI | CTRYAG | 1 cut(s) | 1380 |
| BfuAI | ACCTGC | 1 cut(s) | 886 |
| BfuI | GTATCC | 1 cut(s) | 1401 |
| BglII | AGATCT | 1 cut(s) | 640 |
| BisI | GCNGC | 1 cut(s) | 1185 |
| BlsI | GCNGC | 1 cut(s) | 1186 |
| Bme1390I | CCNGG | 3 cut(s) | 120, 830, 888 |
| Bme18I | GGWCC | 1 cut(s) | 390 |
| BmgT120I | GGNCC | 1 cut(s) | 390 |
| BmiI | GGNNCC | 1 cut(s) | 970 |
| BmrFI | CCNGG | 3 cut(s) | 120, 830, 888 |
| BmsI | GCATC | 3 cut(s) | 101, 185, 1033 |
| BmtI | GCTAGC | 1 cut(s) | 1379 |
| BpiI | GAAGAC | 2 cut(s) | 470, 1245 |
| BpmI | CTGGAG | 1 cut(s) | 1131 |
| BpuEI | CTTGAG | 2 cut(s) | 233, 475 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| BsaI | GGTCTC | 1 cut(s) | 260 |
| BsaJI | CCNNGG | 2 cut(s) | 165, 785 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 688, 965 |
| Bse118I | RCCGGY | 1 cut(s) | 143 |
| Bse1I | ACTGG | 3 cut(s) | 242, 551, 1263 |
| Bse3DI | GCAATG | 1 cut(s) | 1244 |
| BseBI | CCWGG | 2 cut(s) | 830, 888 |
| BseDI | CCNNGG | 2 cut(s) | 165, 785 |
| BseGI | GGATG | 3 cut(s) | 200, 769, 1048 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 688, 965 |
| BseMI | GCAATG | 1 cut(s) | 1244 |
| BseMII | CTCAG | 6 cut(s) | 147, 340, 525, 599, 1424, 1436 |
| BseNI | ACTGG | 3 cut(s) | 242, 551, 1263 |
| BseRI | GAGGAG | 2 cut(s) | 1450, 1453 |
| BseX3I | CGGCCG | 1 cut(s) | 141 |
| BseXI | GCAGC | 1 cut(s) | 1171 |
| BseYI | CCCAGC | 1 cut(s) | 37 |
| Bsh1285I | CGRYCG | 1 cut(s) | 144 |
| BshFI | GGCC | 4 cut(s) | 143, 306, 442, 1105 |
| BsiEI | CGRYCG | 1 cut(s) | 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1423 |
| BsiSI | CCGG | 2 cut(s) | 120, 144 |
| BslFI | GGGAC | 2 cut(s) | 91, 102 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 688, 965 |
| BsmAI | GTCTC | 5 cut(s) | 143, 260, 698, 815, 1435 |
| BsmBI | CGTCTC | 1 cut(s) | 815 |
| BsmFI | GGGAC | 2 cut(s) | 91, 102 |
| BsnI | GGCC | 4 cut(s) | 143, 306, 442, 1105 |
| Bso31I | GGTCTC | 1 cut(s) | 260 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1145, 1423 |
| Bsp143I | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| Bsp19I | CCATGG | 2 cut(s) | 165, 785 |
| BspACI | CCGC | 4 cut(s) | 95, 101, 263, 748 |
| BspANI | GGCC | 4 cut(s) | 143, 306, 442, 1105 |
| BspCNI | CTCAG | 6 cut(s) | 146, 339, 524, 598, 1425, 1437 |
| BspLI | GGNNCC | 1 cut(s) | 970 |
| BspMI | ACCTGC | 1 cut(s) | 886 |
| BspOI | GCTAGC | 1 cut(s) | 1379 |
| BspPI | GGATC | 1 cut(s) | 1321 |
| BspQI | GCTCTTC | 3 cut(s) | 353, 522, 1490 |
| BspTNI | GGTCTC | 1 cut(s) | 260 |
| BsrDI | GCAATG | 1 cut(s) | 1244 |
| BsrFI | RCCGGY | 1 cut(s) | 143 |
| BsrI | ACTGG | 3 cut(s) | 242, 551, 1263 |
| BssAI | RCCGGY | 1 cut(s) | 143 |
| BssECI | CCNNGG | 2 cut(s) | 165, 785 |
| BssMI | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| BssT1I | CCWWGG | 2 cut(s) | 165, 785 |
| Bst2UI | CCWGG | 2 cut(s) | 830, 888 |
| Bst4CI | ACNGT | 4 cut(s) | 741, 1347, 1413, 1418 |
| Bst6I | CTCTTC | 5 cut(s) | 234, 353, 522, 1164, 1490 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 450, 1377 |
| BstDSI | CCRYGG | 2 cut(s) | 165, 785 |
| BstF5I | GGATG | 3 cut(s) | 200, 769, 1048 |
| BstHHI | GCGC | 1 cut(s) | 1404 |
| BstKTI | GATC | 4 cut(s) | 643, 874, 1216, 1316 |
| BstMAI | GTCTC | 5 cut(s) | 143, 260, 698, 815, 1435 |
| BstMBI | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| BstMCI | CGRYCG | 1 cut(s) | 144 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1111, 1184, 1275 |
| BstNI | CCWGG | 2 cut(s) | 830, 888 |
| BstSCI | CCNGG | 3 cut(s) | 118, 828, 886 |
| BstSFI | CTRYAG | 1 cut(s) | 1380 |
| BstV1I | GCAGC | 1 cut(s) | 1171 |
| BstV2I | GAAGAC | 2 cut(s) | 470, 1245 |
| BstX2I | RGATCY | 1 cut(s) | 640 |
| BstYI | RGATCY | 1 cut(s) | 640 |
| BstZI | CGGCCG | 1 cut(s) | 141 |
| BsuI | GTATCC | 1 cut(s) | 1401 |
| BsuRI | GGCC | 4 cut(s) | 143, 306, 442, 1105 |
| BtgI | CCRYGG | 2 cut(s) | 165, 785 |
| BtsCI | GGATG | 3 cut(s) | 200, 769, 1048 |
| BtsI | GCAGTG | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 3 cut(s) | 127, 379, 1495 |
| BveI | ACCTGC | 1 cut(s) | 886 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 450, 1377 |
| CaiI | CAGNNNCTG | 1 cut(s) | 404 |
| CfoI | GCGC | 1 cut(s) | 1404 |
| Cfr10I | RCCGGY | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 1 cut(s) | 390 |
| CseI | GACGC | 1 cut(s) | 1250 |
| CsiI | ACCWGGT | 1 cut(s) | 886 |
| Csp6I | GTAC | 3 cut(s) | 571, 1288, 1414 |
| CviAII | CATG | 4 cut(s) | 166, 189, 786, 1266 |
| CviQI | GTAC | 3 cut(s) | 571, 1288, 1414 |
| DpnI | GATC | 4 cut(s) | 642, 873, 1215, 1315 |
| DpnII | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| DraI | TTTAAA | 1 cut(s) | 1050 |
| EaeI | YGGCCR | 2 cut(s) | 141, 1103 |
| EagI | CGGCCG | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 5 cut(s) | 234, 353, 522, 1164, 1490 |
| EarI | CTCTTC | 5 cut(s) | 234, 353, 522, 1164, 1490 |
| EclXI | CGGCCG | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 2 cut(s) | 165, 785 |
| Eco147I | AGGCCT | 1 cut(s) | 306 |
| Eco24I | GRGCYC | 1 cut(s) | 1145 |
| Eco31I | GGTCTC | 1 cut(s) | 260 |
| Eco32I | GATATC | 2 cut(s) | 186, 1453 |
| Eco47I | GGWCC | 1 cut(s) | 390 |
| Eco52I | CGGCCG | 1 cut(s) | 141 |
| Eco57I | CTGAAG | 4 cut(s) | 215, 464, 1471, 1490 |
| EcoRII | CCWGG | 2 cut(s) | 828, 886 |
| EcoRV | GATATC | 2 cut(s) | 186, 1453 |
| EcoT14I | CCWWGG | 2 cut(s) | 165, 785 |
| EcoT38I | GRGCYC | 1 cut(s) | 1145 |
| ErhI | CCWWGG | 2 cut(s) | 165, 785 |
| Esp3I | CGTCTC | 1 cut(s) | 815 |
| FaeI | CATG | 4 cut(s) | 169, 192, 789, 1269 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 462, 494 |
| FaqI | GGGAC | 2 cut(s) | 91, 102 |
| FatI | CATG | 4 cut(s) | 165, 188, 785, 1265 |
| FauNDI | CATATG | 1 cut(s) | 1123 |
| FblI | GTMKAC | 3 cut(s) | 26, 288, 1383 |
| Fnu4HI | GCNGC | 1 cut(s) | 1185 |
| FokI | GGATG | 3 cut(s) | 207, 776, 1055 |
| FriOI | GRGCYC | 1 cut(s) | 1145 |
| Fsp4HI | GCNGC | 1 cut(s) | 1185 |
| FspBI | CTAG | 4 cut(s) | 978, 995, 1376, 1395 |
| GlaI | GCGC | 1 cut(s) | 1403 |
| GluI | GCNGC | 1 cut(s) | 1185 |
| GsaI | CCCAGC | 1 cut(s) | 41 |
| GsuI | CTGGAG | 1 cut(s) | 1131 |
| HaeIII | GGCC | 4 cut(s) | 143, 306, 442, 1105 |
| HapII | CCGG | 2 cut(s) | 120, 144 |
| HgaI | GACGC | 1 cut(s) | 1250 |
| HhaI | GCGC | 1 cut(s) | 1404 |
| Hin1II | CATG | 4 cut(s) | 169, 192, 789, 1269 |
| Hin6I | GCGC | 1 cut(s) | 1402 |
| HinP1I | GCGC | 1 cut(s) | 1402 |
| HincII | GTYRAC | 1 cut(s) | 289 |
| HindII | GTYRAC | 1 cut(s) | 289 |
| HindIII | AAGCTT | 2 cut(s) | 9, 579 |
| HpaII | CCGG | 2 cut(s) | 120, 144 |
| HphI | GGTGA | 9 cut(s) | 70, 84, 158, 308, 419, 607, 902, 1150, 1475 |
| Hpy166II | GTNNAC | 5 cut(s) | 27, 289, 1384, 1392, 1493 |
| Hpy188III | TCNNGA | 6 cut(s) | 108, 434, 492, 593, 1148, 1226 |
| Hpy8I | GTNNAC | 5 cut(s) | 27, 289, 1384, 1392, 1493 |
| Hpy99I | CGWCG | 1 cut(s) | 314 |
| HpyAV | CCTTC | 4 cut(s) | 369, 765, 959, 1465 |
| HpyCH4III | ACNGT | 4 cut(s) | 741, 1347, 1413, 1418 |
| HpyCH4IV | ACGT | 2 cut(s) | 421, 824 |
| HpyCH4V | TGCA | 2 cut(s) | 22, 1249 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1111, 1184, 1275 |
| HpySE526I | ACGT | 2 cut(s) | 421, 824 |
| Hsp92II | CATG | 4 cut(s) | 169, 192, 789, 1269 |
| HspAI | GCGC | 1 cut(s) | 1402 |
| Kzo9I | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| LguI | GCTCTTC | 3 cut(s) | 353, 522, 1490 |
| LmnI | GCTCC | 2 cut(s) | 181, 1111 |
| Lsp1109I | GCAGC | 1 cut(s) | 1171 |
| LweI | GCATC | 3 cut(s) | 101, 185, 1033 |
| MabI | ACCWGGT | 1 cut(s) | 886 |
| MaeI | CTAG | 4 cut(s) | 978, 995, 1376, 1395 |
| MaeII | ACGT | 2 cut(s) | 421, 824 |
| MaeIII | GTNAC | 1 cut(s) | 1025 |
| MalI | GATC | 4 cut(s) | 642, 873, 1215, 1315 |
| MboI | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| MfeI | CAATTG | 1 cut(s) | 603 |
| MflI | RGATCY | 1 cut(s) | 640 |
| MhlI | GDGCHC | 2 cut(s) | 1145, 1423 |
| MlsI | TGGCCA | 1 cut(s) | 1105 |
| MluCI | AATT | 3 cut(s) | 341, 603, 808 |
| MluNI | TGGCCA | 1 cut(s) | 1105 |
| MlyI | GAGTC | 3 cut(s) | 294, 544, 1256 |
| MmeI | TCCRAC | 1 cut(s) | 607 |
| Mox20I | TGGCCA | 1 cut(s) | 1105 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1505 |
| MscI | TGGCCA | 1 cut(s) | 1105 |
| MseI | TTAA | 4 cut(s) | 501, 711, 801, 1049 |
| MslI | CAYNNNNRTG | 4 cut(s) | 193, 712, 810, 1075 |
| Msp20I | TGGCCA | 1 cut(s) | 1105 |
| MspA1I | CMGCKG | 1 cut(s) | 103 |
| MspI | CCGG | 2 cut(s) | 120, 144 |
| MspR9I | CCNGG | 3 cut(s) | 120, 830, 888 |
| MunI | CAATTG | 1 cut(s) | 603 |
| MvaI | CCWGG | 2 cut(s) | 830, 888 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1111, 1184, 1275 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NcoI | CCATGG | 2 cut(s) | 165, 785 |
| NdeI | CATATG | 1 cut(s) | 1123 |
| NdeII | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| NheI | GCTAGC | 1 cut(s) | 1375 |
| NlaIII | CATG | 4 cut(s) | 169, 192, 789, 1269 |
| NlaIV | GGNNCC | 1 cut(s) | 970 |
| PceI | AGGCCT | 1 cut(s) | 306 |
| PciSI | GCTCTTC | 3 cut(s) | 353, 522, 1490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1505 |
| PfeI | GAWTC | 9 cut(s) | 123, 206, 248, 322, 380, 589, 612, 726, 983 |
| PfoI | TCCNGGA | 2 cut(s) | 118, 828 |
| PkrI | GCNGC | 1 cut(s) | 1186 |
| PleI | GAGTC | 3 cut(s) | 293, 544, 1256 |
| PpsI | GAGTC | 3 cut(s) | 293, 544, 1256 |
| PsiI | TTATAA | 1 cut(s) | 464 |
| Psp1406I | AACGTT | 1 cut(s) | 421 |
| Psp6I | CCWGG | 2 cut(s) | 828, 886 |
| PspFI | CCCAGC | 1 cut(s) | 37 |
| PspGI | CCWGG | 2 cut(s) | 828, 886 |
| PspN4I | GGNNCC | 1 cut(s) | 970 |
| PspPI | GGNCC | 1 cut(s) | 390 |
| PstNI | CAGNNNCTG | 1 cut(s) | 404 |
| PsuI | RGATCY | 1 cut(s) | 640 |
| RsaI | GTAC | 3 cut(s) | 572, 1289, 1415 |
| RsaNI | GTAC | 3 cut(s) | 571, 1288, 1414 |
| RseI | CAYNNNNRTG | 4 cut(s) | 193, 712, 810, 1075 |
| SalI | GTCGAC | 1 cut(s) | 287 |
| SapI | GCTCTTC | 3 cut(s) | 353, 522, 1490 |
| SaqAI | TTAA | 4 cut(s) | 501, 711, 801, 1049 |
| SatI | GCNGC | 1 cut(s) | 1185 |
| Sau3AI | GATC | 4 cut(s) | 640, 871, 1213, 1313 |
| Sau96I | GGNCC | 1 cut(s) | 390 |
| SchI | GAGTC | 3 cut(s) | 294, 544, 1256 |
| ScrFI | CCNGG | 3 cut(s) | 120, 830, 888 |
| SduI | GDGCHC | 2 cut(s) | 1145, 1423 |
| SexAI | ACCWGGT | 1 cut(s) | 886 |
| SfaNI | GCATC | 3 cut(s) | 101, 185, 1033 |
| SfcI | CTRYAG | 1 cut(s) | 1380 |
| SinI | GGWCC | 1 cut(s) | 390 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 193, 712, 810, 1075 |
| SmlI | CTYRAG | 2 cut(s) | 212, 490 |
| SmoI | CTYRAG | 2 cut(s) | 212, 490 |
| SpeI | ACTAGT | 1 cut(s) | 1394 |
| Sse9I | AATT | 3 cut(s) | 341, 603, 808 |
| SseBI | AGGCCT | 1 cut(s) | 306 |
| SsiI | CCGC | 4 cut(s) | 95, 101, 263, 748 |
| SspMI | CTAG | 4 cut(s) | 978, 995, 1376, 1395 |
| StuI | AGGCCT | 1 cut(s) | 306 |
| StyD4I | CCNGG | 3 cut(s) | 118, 828, 886 |
| StyI | CCWWGG | 2 cut(s) | 165, 785 |
| TaaI | ACNGT | 4 cut(s) | 741, 1347, 1413, 1418 |
| TaiI | ACGT | 2 cut(s) | 424, 827 |
| TaqI | TCGA | 5 cut(s) | 288, 592, 874, 1067, 1233 |
| TasI | AATT | 3 cut(s) | 341, 603, 808 |
| TatI | WGTACW | 2 cut(s) | 570, 1287 |
| TfiI | GAWTC | 9 cut(s) | 123, 206, 248, 322, 380, 589, 612, 726, 983 |
| Tru1I | TTAA | 4 cut(s) | 501, 711, 801, 1049 |
| Tru9I | TTAA | 4 cut(s) | 501, 711, 801, 1049 |
| TscAI | CASTG | 3 cut(s) | 134, 379, 1495 |
| TseI | GCWGC | 1 cut(s) | 1184 |
| TspDTI | ATGAA | 4 cut(s) | 431, 651, 892, 1243 |
| TspGWI | ACGGA | 2 cut(s) | 942, 1074 |
| TspRI | CASTG | 3 cut(s) | 134, 379, 1495 |
| VpaK11BI | GGWCC | 1 cut(s) | 390 |
| XmiI | GTMKAC | 3 cut(s) | 26, 288, 1383 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1505 |
| XspI | CTAG | 4 cut(s) | 978, 995, 1376, 1395 |