Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

74307847 .. 74310412

Gene Structure 2566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG515800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGGGTTTAGCTTCCTTCAGGTCCCTCCCTTGTTTCACTTGCAGACCCAAACGCTCCATCTCCGCCACCAGACCCAACTCCCTGTCTCTTCCTTCCTCCACCATTGTTCGCGCTCAACAGTGGAGAGAGAAGAAGCCTCTGCATTCGTTATTGAAAGACCTGCAGAAGGCTCCTCCTGTTAGGGATTTTGTTGGAGCTCTCAGGGCGGCCAATGAAAGAACTGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAAGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTTGATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATGAAAACATGGCAGCAATAAGAAATGCTGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATTGTTGATGCTTGGCAAATTTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGATTGCTGCTGTTTTGCCTGACCTTGATATCGGTTACATGATTAAGATATGCAAGAAGCTTAAAATGGCAACCCTTGTTGAGGTGCATGATGAGAAGGAAATGGACCGGGTTCTTGGAATCGAGGGGGTTGAGTTTATTGGCATCAACAACCGCAATCTTGAAACATTCGAGGTTGATACTAGCAACACAAAAAAGCTTCTTGAAGGAAAGCGTGGCGAAGTGATCCGTGAAAGAGACATAATTGTGGTAGGAGAATCTGGGTTGTTTAATCCTGATGACATAGCTTATGTGCAAAAAGCTGGTGTTAAAGCAATTTTGGTTGGAGAGTCGATTGTGAAACAGAGTGACCCCAAGAAAGGAATAGCTCAACTGTTTGGTAGAAACATTTCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

299

Amino Acids

32.89

Weight (kDa)

8.63

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	41 - 292	6.3e-74	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	66, 209, 655
AclWI	GGATC	3 cut(s)	290, 471, 721
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	440, 462
AcuI	CTGAAG	2 cut(s)	4, 267
AfiI	CCNNNNNNNGG	4 cut(s)	169, 272, 583, 860
AgsI	TTSAA	4 cut(s)	157, 305, 665, 707
AjnI	CCWGG	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	93, 732
AlwI	GGATC	3 cut(s)	290, 471, 721
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	3 cut(s)	335, 395, 509
ApoI	RAATTY	2 cut(s)	440, 462
Asp700I	GAANNNNTTC	1 cut(s)	889
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	24, 607
AsuC2I	CCSGG	1 cut(s)	611
AvaII	GGWCC	2 cut(s)	24, 607
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	322, 407, 496
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	93, 732
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	4 cut(s)	210, 336, 396, 510
BlsI	GCNGC	4 cut(s)	211, 337, 397, 511
Bme1390I	CCNGG	2 cut(s)	234, 611
Bme18I	GGWCC	2 cut(s)	24, 607
BmgT120I	GGNCC	2 cut(s)	24, 607
BmiI	GGNNCC	2 cut(s)	26, 174
BmrFI	CCNGG	2 cut(s)	234, 611
BmsI	GCATC	3 cut(s)	442, 481, 654
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	611
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 272, 583, 860
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	4 cut(s)	169, 272, 583, 860
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	165, 288
BseXI	GCAGC	3 cut(s)	322, 407, 496
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	299, 610
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	169, 272, 583, 860
BsmAI	GTCTC	2 cut(s)	93, 732
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	295, 476, 726
BspACI	CCGC	3 cut(s)	66, 209, 655
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	26, 174
BspMAI	CTGCAG	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	290, 471, 721
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	295, 476, 726
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	123, 876
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	203, 344
BstENI	CCTNNNNNAGG	2 cut(s)	167, 581
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	298, 479, 729
BstMAI	GTCTC	2 cut(s)	93, 732
BstMBI	GATC	3 cut(s)	295, 476, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	232, 609
BstSFI	CTRYAG	1 cut(s)	164
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	322, 407, 496
BsuRI	GGCC	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	128, 425
BveI	ACCTGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	24, 607
CviAII	CATG	3 cut(s)	391, 541, 590
DdeI	CTNAG	2 cut(s)	203, 344
DpnI	GATC	3 cut(s)	297, 478, 728
DpnII	GATC	3 cut(s)	295, 476, 726
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	24, 607
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	4, 267
EcoICRI	GAGCTC	1 cut(s)	200
EcoNI	CCTNNNNNAGG	2 cut(s)	167, 581
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	3 cut(s)	394, 544, 593
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	390, 540, 589
Fnu4HI	GCNGC	4 cut(s)	210, 336, 396, 510
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	210, 336, 396, 510
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	4 cut(s)	210, 336, 396, 510
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	299, 610
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	394, 544, 593
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	4 cut(s)	258, 315, 560, 698
HinfI	GANTC	3 cut(s)	621, 758, 830
HpaII	CCGG	2 cut(s)	299, 610
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	3 cut(s)	662, 704, 776
HpyAV	CCTTC	5 cut(s)	28, 105, 163, 592, 701
HpyCH4III	ACNGT	2 cut(s)	123, 876
HpyCH4V	TGCA	8 cut(s)	45, 145, 166, 435, 488, 555, 589, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	203, 344
Hsp92II	CATG	3 cut(s)	394, 544, 593
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	295, 476, 726
LmnI	GCTCC	4 cut(s)	62, 178, 197, 332
Lsp1109I	GCAGC	3 cut(s)	322, 407, 496
LweI	GCATC	3 cut(s)	442, 481, 654
MaeI	CTAG	1 cut(s)	684
MaeIII	GTNAC	2 cut(s)	536, 848
MalI	GATC	3 cut(s)	297, 478, 728
MboI	GATC	3 cut(s)	295, 476, 726
MboII	GAAGA	3 cut(s)	83, 145, 265
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	5 cut(s)	306, 440, 462, 744, 816
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	2 cut(s)	175, 805
MroXI	GAANNNNTTC	1 cut(s)	889
MseI	TTAA	4 cut(s)	546, 564, 771, 810
MslI	CAYNNNNRTG	2 cut(s)	746, 893
MspI	CCGG	2 cut(s)	299, 610
MspR9I	CCNGG	2 cut(s)	234, 611
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	611
NdeII	GATC	3 cut(s)	295, 476, 726
NlaIII	CATG	3 cut(s)	394, 544, 593
NlaIV	GGNNCC	2 cut(s)	26, 174
NmuCI	GTSAC	1 cut(s)	848
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	889
PfeI	GAWTC	2 cut(s)	621, 758
PkrI	GCNGC	4 cut(s)	211, 337, 397, 511
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	26, 174
PspPI	GGNCC	2 cut(s)	24, 607
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	746, 893
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	546, 564, 771, 810
SatI	GCNGC	4 cut(s)	210, 336, 396, 510
Sau3AI	GATC	3 cut(s)	295, 476, 726
Sau96I	GGNCC	2 cut(s)	24, 607
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	2 cut(s)	234, 611
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	3 cut(s)	442, 481, 654
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	2 cut(s)	24, 607
SmiMI	CAYNNNNRTG	2 cut(s)	746, 893
Sse9I	AATT	5 cut(s)	306, 440, 462, 744, 816
SsiI	CCGC	3 cut(s)	66, 209, 655
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	2 cut(s)	232, 609
TaaI	ACNGT	2 cut(s)	123, 876
TaqI	TCGA	4 cut(s)	475, 624, 672, 833
TasI	AATT	5 cut(s)	306, 440, 462, 744, 816
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	621, 758
Tru1I	TTAA	4 cut(s)	546, 564, 771, 810
Tru9I	TTAA	4 cut(s)	546, 564, 771, 810
TscAI	CASTG	2 cut(s)	128, 425
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	3 cut(s)	335, 395, 509
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	4 cut(s)	231, 336, 375, 399
TspGWI	ACGGA	2 cut(s)	719, 883
TspRI	CASTG	2 cut(s)	128, 425
VpaK11BI	GGWCC	2 cut(s)	24, 607
XagI	CCTNNNNNAGG	2 cut(s)	167, 581
XapI	RAATTY	2 cut(s)	440, 462
XmnI	GAANNNNTTC	1 cut(s)	889
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.