Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

31996408 .. 32000446

Gene Structure 4039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40490.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCCTTGCCAAGGCAGCCTTATTCACTTTTGTATTGCCTCTATATGTCATTTCAGGACCCGCGAAGAGCTTGATCGATACTTGGAGGCATCGCAGATTAGGCAGAGGGCAATTGAAAGAGTTACTAATGTTGTCGGAACATACAATGATCTAAGGCTTAGGATATTCTCAAAGCACCCTGATTTATTTCCAGAAGAGGTATTCAACATAGAAACCTTCAAATGGTCATTTGGAATTCTTTTCTCACGTTTGGTTCGATTACCCTCAATGGATGGGAAAGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGATACGTTTTTGGATTATGATCAATCATCCAAGGGAGTTGTTTTTACAACGGCCGGGCCATACCAGCCAGGTGAGCAGGTCTTTATTTCCTATGGGAAGAAATCGAATGGAGAGCTATTGCTTTCGTATGGGTTTGTCCCAAGCAAGGGCGCCAACCCTAGTGATTCCGTTGAGTTATCAGTGTCACTCCTGAAATCTGACAAATGCTATGAGGAGAAGGTGGAAGCTCTGAGAAAATATGGACTATCAGCAAGAGAGTGTTTTCCTGTACGAATTACTGGCTGGCCATCAGAGCTAATGGCATTTGCTTATTTAGCTGTCAGTCCTCCAAGTATGAGCAAACAATTTGAAGAGATGGCTGCTGCAGCATCGAATAAATCTACTACCCAGAAGGATTTGAGATATCCTGAAATAGAAGAAGAAGTACTACAGTTCATATTGGACAGTTGTGAAGTTAGCATATCGAAGTATAGCAAATTCTTACAGGCAAGTGGTTCAATGGATTTGGATGTGACATCTCCAAAGCAGCTAAACCGAAGGTTGTTTCTGAAACAGCTAGCAGTGGACTTGTCTACTAGCGAGCAGAAAATCTTATTCCGTGCTCAATATATTCTGAGAAGGCAACTGAGGGATATACGAAAGGGTGAACTGAGAGCTCTAACGATCTTTAATGGGTTCAGGAAGTGGTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

341

Amino Acids

38.92

Weight (kDa)

8.56

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	95 - 299	9.5e-11	SET domain
Rubis-subs-bind	PF09273	332 - 465	2e-19	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	899
AccII	CGCG	1 cut(s)	63
AciI	CCGC	1 cut(s)	61
AcoI	YGGCCR	2 cut(s)	378, 611
AcsI	RAATTY	2 cut(s)	234, 803
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	597, 753
AfiI	CCNNNNNNNGG	4 cut(s)	11, 222, 472, 473
AgsI	TTSAA	5 cut(s)	116, 205, 220, 677, 825
AjnI	CCWGG	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	70, 442, 554, 622, 644, 856, 883, 983
AluI	AGCT	8 cut(s)	70, 442, 554, 622, 644, 856, 883, 983
Alw21I	GWGCWC	2 cut(s)	931, 985
AoxI	GGCC	3 cut(s)	378, 383, 611
ApeKI	GCWGC	5 cut(s)	15, 686, 689, 692, 853
ApoI	RAATTY	2 cut(s)	234, 803
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	2 cut(s)	57, 383
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	410, 983
AsuNHI	GCTAGC	1 cut(s)	883
AvaII	GGWCC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	985
BarI	GAAGNNNNNNTAC	4 cut(s)	735, 738, 767, 770
Bbv12I	GWGCWC	2 cut(s)	931, 985
BbvI	GCAGC	5 cut(s)	27, 673, 676, 704, 865
BccI	CCATC	3 cut(s)	266, 622, 676
BceAI	ACGGC	1 cut(s)	393
BciT130I	CCWGG	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	382
BfaI	CTAG	3 cut(s)	486, 884, 903
BfmI	CTRYAG	2 cut(s)	690, 755
BfoI	RGCGCY	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	5 cut(s)	16, 687, 690, 693, 854
BlsI	GCNGC	5 cut(s)	17, 688, 691, 694, 855
BmcAI	AGTACT	1 cut(s)	753
Bme1390I	CCNGG	2 cut(s)	382, 396
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 383
BmiI	GGNNCC	3 cut(s)	59, 291, 478
BmrFI	CCNGG	2 cut(s)	382, 396
BmsI	GCATC	2 cut(s)	98, 704
BmtI	GCTAGC	1 cut(s)	887
Bpu10I	CCTNAGC	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	382
Bsa29I	ATCGAT	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	4 cut(s)	10, 285, 293, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 222, 472, 473
Bse1I	ACTGG	1 cut(s)	610
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	4 cut(s)	10, 285, 293, 357
BseGI	GGATG	3 cut(s)	277, 353, 841
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	4 cut(s)	11, 222, 472, 473
BseMII	CTCAG	4 cut(s)	548, 932, 944, 968
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	1 cut(s)	554
BseX3I	CGGCCG	1 cut(s)	378
BseXI	GCAGC	5 cut(s)	27, 673, 676, 704, 865
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	380, 385, 613
BshNI	GGYRCC	1 cut(s)	476
BshVI	ATCGAT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	931, 985
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	4 cut(s)	11, 222, 472, 473
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	380, 385, 613
Bsp1286I	GDGCHC	2 cut(s)	931, 985
Bsp143I	GATC	4 cut(s)	73, 148, 346, 990
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	380, 385, 613
BspCNI	CTCAG	4 cut(s)	549, 933, 945, 969
BspDI	ATCGAT	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	59, 291, 478
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	394
BspOI	GCTAGC	1 cut(s)	887
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	4 cut(s)	10, 285, 293, 357
BssMI	GATC	4 cut(s)	73, 148, 346, 990
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	4 cut(s)	10, 285, 293, 357
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	759, 773
Bst6I	CTCTTC	3 cut(s)	60, 189, 672
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	611, 885, 908
BstDEI	CTNAG	6 cut(s)	152, 158, 557, 941, 953, 977
BstENI	CCTNNNNNAGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	277, 353, 841
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	4 cut(s)	76, 151, 349, 993
BstMBI	GATC	4 cut(s)	73, 148, 346, 990
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 100, 391, 400, 619, 641, 692
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	380, 394
BstSFI	CTRYAG	2 cut(s)	690, 755
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	27, 673, 676, 704, 865
BstZI	CGGCCG	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	380, 385, 613
BsuTUI	ATCGAT	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	277, 353, 841
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	2 cut(s)	513, 894
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	3 cut(s)	611, 885, 908
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	57, 383
ClaI	ATCGAT	1 cut(s)	76
Csp6I	GTAC	2 cut(s)	596, 752
CviQI	GTAC	2 cut(s)	596, 752
DdeI	CTNAG	6 cut(s)	152, 158, 557, 941, 953, 977
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	4 cut(s)	75, 150, 348, 992
DpnII	GATC	4 cut(s)	73, 148, 346, 990
EaeI	YGGCCR	2 cut(s)	378, 611
EagI	CGGCCG	1 cut(s)	378
Eam1104I	CTCTTC	3 cut(s)	60, 189, 672
EarI	CTCTTC	3 cut(s)	60, 189, 672
Ecl136II	GAGCTC	1 cut(s)	983
EclXI	CGGCCG	1 cut(s)	378
Eco130I	CCWWGG	4 cut(s)	10, 285, 293, 357
Eco24I	GRGCYC	1 cut(s)	985
Eco32I	GATATC	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	57
Eco52I	CGGCCG	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	983
EcoNI	CCTNNNNNAGG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	731
EcoT14I	CCWWGG	4 cut(s)	10, 285, 293, 357
EcoT38I	GRGCYC	1 cut(s)	985
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	4 cut(s)	10, 285, 293, 357
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	449
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	5 cut(s)	16, 687, 690, 693, 854
FokI	GGATG	3 cut(s)	284, 340, 848
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	5 cut(s)	16, 687, 690, 693, 854
FspBI	CTAG	3 cut(s)	486, 884, 903
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	5 cut(s)	16, 687, 690, 693, 854
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	380, 385, 613
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	310, 491
HpaII	CCGG	1 cut(s)	381
HphI	GGTGA	2 cut(s)	410, 983
Hpy166II	GTNNAC	3 cut(s)	892, 900, 974
Hpy188I	TCNGA	6 cut(s)	137, 526, 558, 619, 876, 942
Hpy188III	TCNNGA	5 cut(s)	55, 191, 517, 734, 1006
Hpy8I	GTNNAC	3 cut(s)	892, 900, 974
HpyAV	CCTTC	5 cut(s)	226, 538, 712, 858, 939
HpyCH4III	ACNGT	2 cut(s)	759, 773
HpyCH4IV	ACGT	2 cut(s)	247, 332
HpyCH4V	TGCA	1 cut(s)	692
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 100, 391, 400, 619, 641, 692
HpyF3I	CTNAG	6 cut(s)	152, 158, 557, 941, 953, 977
HpySE526I	ACGT	2 cut(s)	247, 332
Hsp92I	GRCGYC	1 cut(s)	477
HspAI	GCGC	1 cut(s)	477
KasI	GGCGCC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	73, 148, 346, 990
LguI	GCTCTTC	1 cut(s)	60
Lsp1109I	GCAGC	5 cut(s)	27, 673, 676, 704, 865
LweI	GCATC	2 cut(s)	98, 704
MaeI	CTAG	3 cut(s)	486, 884, 903
MaeII	ACGT	2 cut(s)	247, 332
MaeIII	GTNAC	3 cut(s)	121, 510, 838
MalI	GATC	4 cut(s)	75, 150, 348, 992
MboI	GATC	4 cut(s)	73, 148, 346, 990
MboII	GAAGA	6 cut(s)	77, 206, 436, 689, 755, 758
MfeI	CAATTG	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	931, 985
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	5 cut(s)	111, 234, 600, 671, 803
MluNI	TGGCCA	1 cut(s)	613
Mly113I	GGCGCC	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	9 cut(s)	49, 79, 99, 190, 274, 316, 532, 663, 948
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	2 cut(s)	996, 1017
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	613
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	382, 396
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	7 cut(s)	15, 100, 391, 400, 619, 641, 692
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	4 cut(s)	73, 148, 346, 990
NheI	GCTAGC	1 cut(s)	883
NlaIV	GGNNCC	3 cut(s)	59, 291, 478
NmuCI	GTSAC	2 cut(s)	510, 838
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	310, 491
PkrI	GCNGC	5 cut(s)	17, 688, 691, 694, 855
PluTI	GGCGCC	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	985
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	59, 291, 478
PspPI	GGNCC	2 cut(s)	57, 383
PspPPI	RGGWCCY	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	694
RsaI	GTAC	2 cut(s)	597, 753
RsaNI	GTAC	2 cut(s)	596, 752
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	985
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	996, 1017
SatI	GCNGC	5 cut(s)	16, 687, 690, 693, 854
Sau3AI	GATC	4 cut(s)	73, 148, 346, 990
Sau96I	GGNCC	2 cut(s)	57, 383
ScaI	AGTACT	1 cut(s)	753
ScrFI	CCNGG	2 cut(s)	382, 396
SduI	GDGCHC	2 cut(s)	931, 985
SfaNI	GCATC	2 cut(s)	98, 704
SfcI	CTRYAG	2 cut(s)	690, 755
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	5 cut(s)	111, 234, 600, 671, 803
SsiI	CCGC	1 cut(s)	61
SspDI	GGCGCC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	486, 884, 903
SstI	GAGCTC	1 cut(s)	985
StyD4I	CCNGG	2 cut(s)	380, 394
StyI	CCWWGG	4 cut(s)	10, 285, 293, 357
TaaI	ACNGT	2 cut(s)	759, 773
TaiI	ACGT	2 cut(s)	250, 335
TaqI	TCGA	5 cut(s)	76, 256, 431, 698, 791
TasI	AATT	5 cut(s)	111, 234, 600, 671, 803
TatI	WGTACW	1 cut(s)	751
TfiI	GAWTC	2 cut(s)	310, 491
Tru1I	TTAA	2 cut(s)	996, 1017
Tru9I	TTAA	2 cut(s)	996, 1017
TscAI	CASTG	2 cut(s)	513, 894
TseFI	GTSAC	2 cut(s)	510, 838
TseI	GCWGC	5 cut(s)	15, 686, 689, 692, 853
Tsp45I	GTSAC	2 cut(s)	510, 838
TspDTI	ATGAA	1 cut(s)	751
TspGWI	ACGGA	2 cut(s)	484, 914
TspRI	CASTG	2 cut(s)	513, 894
VpaK11BI	GGWCC	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	9
XapI	RAATTY	2 cut(s)	234, 803
XmiI	GTMKAC	1 cut(s)	899
XspI	CTAG	3 cut(s)	486, 884, 903
ZrmI	AGTACT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.