Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

68753276 .. 68756158

Gene Structure 2883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGGGTTTAGCTTCCTTCAGGTCCCTCCCTTGTTTCACTTGCAGACCCAAACGCTCCATCTCCGCCACCAGACCCAACTCCCTCTCTCTTCCTTCCTCCACCATTGTTCGCGCTCAACAGGTTGCAACGGGCAGCGAATCGGAGCCGGTGAAAGACGAGCTGAAAATCAAGGAGTGGGAGGTGGGTATGTTTCACAACGAAGTTGCTGCGGCGCAGGGTATCAAGATCAGGAGGAGGCCGCCGACTGGGCCGCCCAAGCACTATGTTGGGCCTTTTGAGTTTCGATTGGAGAATGAGGGCAATACTCCCAGGAATATCTTGGAGGAGATCATATGGCACAAGGACACAGAAGTCGCCAGGTGGAGAGAGAAGAAGCCTCTGCATTCGTTATTGAAAGACCTGCAGAAGGCTCCTCCTGTTAGGGATTTTGTTGGAGCTCTCAGGGCGGCCAATGAAAGAACTGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAAGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTTGATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTCCAGGGAAGTTATGAAAACATGGCAGCAATAAGAAGTGCTGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATTGTTGATGCTTGGCAAATTTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGATTGCTGCTGTTTTGCCTGACCTTGATATCGGTTACATGATTAAGATATGCAAGAAGCTTAAAATGGCAACCCTTGTTGAGGTGCACGATGAGAAGGAAATGGACCGGGTTCTTGGAATCGAGGGGGTTGAGTTTATTGGCATCAACAACCGCAATCTTGAAACATTCGAGGTTGATACTAGCAACACAAAAAAGCTTCTTGAAGGAAAGCGTGGCGAAGTGATCCGTGAAAGAGACATAATTGTGGTAGGAGAATCTGGGTTGTTTAATCCTGATGACATAGCTTATGTGCAAAAAGCTGGTGTTAAAGCAATTTTAGTTGGAGAGTCTATTGTGAAACAGAGTGACCCCAAGAAAGGAATAGCTCAACTGTTTGGTAGAAACATTTCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

379

Amino Acids

42.02

Weight (kDa)

8.09

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	108 - 372	4.5e-76	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	411
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	66, 212, 242, 254, 449, 895
AclWI	GGATC	3 cut(s)	530, 711, 961
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	680, 702
AcuI	CTGAAG	2 cut(s)	4, 507
AfiI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
AgsI	TTSAA	4 cut(s)	397, 545, 905, 947
AjnI	CCWGG	4 cut(s)	311, 359, 472, 612
Alw21I	GWGCWC	2 cut(s)	442, 831
Alw26I	GTCTC	1 cut(s)	972
Alw44I	GTGCAC	1 cut(s)	827
AlwI	GGATC	3 cut(s)	530, 711, 961
AoxI	GGCC	4 cut(s)	239, 251, 272, 450
ApaLI	GTGCAC	1 cut(s)	827
ApeKI	GCWGC	5 cut(s)	135, 209, 575, 635, 749
ApoI	RAATTY	2 cut(s)	680, 702
Asp700I	GAANNNNTTC	1 cut(s)	1129
AspLEI	GCGC	2 cut(s)	116, 217
AspS9I	GGNCC	4 cut(s)	24, 251, 272, 847
AsuC2I	CCSGG	1 cut(s)	851
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	2 cut(s)	24, 847
BaeGI	GKGCMC	1 cut(s)	831
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	2 cut(s)	442, 831
BbvI	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	4 cut(s)	313, 361, 474, 614
BcnI	CCSGG	1 cut(s)	851
BcoDI	GTCTC	1 cut(s)	972
BfaI	CTAG	1 cut(s)	924
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
BlsI	GCNGC	9 cut(s)	137, 211, 214, 243, 255, 451, 577, 637, 751
Bme1390I	CCNGG	5 cut(s)	313, 361, 474, 614, 851
Bme18I	GGWCC	2 cut(s)	24, 847
BmgT120I	GGNCC	4 cut(s)	24, 251, 272, 847
BmiI	GGNNCC	3 cut(s)	26, 147, 414
BmrFI	CCNGG	5 cut(s)	313, 361, 474, 614, 851
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	682, 721, 894
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	672
BpuMI	CCSGG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	3 cut(s)	311, 473, 613
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	253, 469
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	4 cut(s)	313, 361, 474, 614
BseDI	CCNNGG	3 cut(s)	311, 473, 613
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	253, 469
BseRI	GAGGAG	4 cut(s)	250, 341, 405, 528
BseSI	GKGCMC	1 cut(s)	831
BseXI	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	241, 253, 274, 452
BsiHKAI	GWGCWC	2 cut(s)	442, 831
BsiSI	CCGG	3 cut(s)	149, 539, 850
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	5 cut(s)	248, 409, 512, 823, 1100
BsmAI	GTCTC	1 cut(s)	972
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	241, 253, 274, 452
Bsp1286I	GDGCHC	2 cut(s)	442, 831
Bsp143I	GATC	5 cut(s)	228, 330, 535, 716, 966
BspACI	CCGC	6 cut(s)	66, 212, 242, 254, 449, 895
BspANI	GGCC	4 cut(s)	241, 253, 274, 452
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	26, 147, 414
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	530, 711, 961
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	253, 469
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	3 cut(s)	311, 473, 613
BssMI	GATC	5 cut(s)	228, 330, 535, 716, 966
Bst2UI	CCWGG	4 cut(s)	313, 361, 474, 614
Bst4CI	ACNGT	1 cut(s)	1116
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	443, 584
BstENI	CCTNNNNNAGG	2 cut(s)	407, 821
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	116, 217
BstKTI	GATC	5 cut(s)	231, 333, 538, 719, 969
BstMAI	GTCTC	1 cut(s)	972
BstMBI	GATC	5 cut(s)	228, 330, 535, 716, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
BstNI	CCWGG	4 cut(s)	313, 361, 474, 614
BstSCI	CCNGG	5 cut(s)	311, 359, 472, 612, 849
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	831
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BsuRI	GGCC	4 cut(s)	241, 253, 274, 452
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	2 cut(s)	116, 217
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	24, 251, 272, 847
CviAII	CATG	2 cut(s)	631, 781
DdeI	CTNAG	2 cut(s)	443, 584
DpnI	GATC	5 cut(s)	230, 332, 537, 718, 968
DpnII	GATC	5 cut(s)	228, 330, 535, 716, 966
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	24, 847
Eco53kI	GAGCTC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	4, 507
EcoICRI	GAGCTC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	2 cut(s)	407, 821
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	4 cut(s)	311, 359, 472, 612
EcoRV	GATATC	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	2 cut(s)	634, 784
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	2 cut(s)	630, 780
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
FspBI	CTAG	1 cut(s)	924
GlaI	GCGC	2 cut(s)	115, 216
GluI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	4 cut(s)	241, 253, 274, 452
HapII	CCGG	3 cut(s)	149, 539, 850
HhaI	GCGC	2 cut(s)	116, 217
Hin1II	CATG	2 cut(s)	634, 784
Hin6I	GCGC	2 cut(s)	114, 215
HinP1I	GCGC	2 cut(s)	114, 215
HindIII	AAGCTT	4 cut(s)	498, 555, 800, 938
HinfI	GANTC	4 cut(s)	140, 861, 998, 1070
HpaII	CCGG	3 cut(s)	149, 539, 850
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	2 cut(s)	145, 507
Hpy188III	TCNNGA	5 cut(s)	226, 232, 902, 944, 1016
Hpy8I	GTNNAC	1 cut(s)	829
HpyAV	CCTTC	5 cut(s)	28, 105, 403, 832, 941
HpyCH4III	ACNGT	1 cut(s)	1116
HpyCH4V	TGCA	9 cut(s)	45, 128, 385, 406, 675, 728, 795, 829, 1036
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
HpyF3I	CTNAG	2 cut(s)	443, 584
Hsp92II	CATG	2 cut(s)	634, 784
HspAI	GCGC	2 cut(s)	114, 215
Kzo9I	GATC	5 cut(s)	228, 330, 535, 716, 966
LmnI	GCTCC	5 cut(s)	62, 145, 418, 437, 572
Lsp1109I	GCAGC	5 cut(s)	147, 196, 562, 647, 736
LweI	GCATC	3 cut(s)	682, 721, 894
MaeI	CTAG	1 cut(s)	924
MaeIII	GTNAC	2 cut(s)	776, 1088
MalI	GATC	5 cut(s)	230, 332, 537, 718, 968
MboI	GATC	5 cut(s)	228, 330, 535, 716, 966
MboII	GAAGA	3 cut(s)	83, 385, 505
MhlI	GDGCHC	2 cut(s)	442, 831
MluCI	AATT	5 cut(s)	546, 680, 702, 984, 1056
MlyI	GAGTC	1 cut(s)	1079
MmeI	TCCRAC	2 cut(s)	415, 1045
MroXI	GAANNNNTTC	1 cut(s)	1129
MseI	TTAA	4 cut(s)	786, 804, 1011, 1050
MslI	CAYNNNNRTG	2 cut(s)	986, 1133
MspI	CCGG	3 cut(s)	149, 539, 850
MspR9I	CCNGG	5 cut(s)	313, 361, 474, 614, 851
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	4 cut(s)	313, 361, 474, 614
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
NciI	CCSGG	1 cut(s)	851
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	5 cut(s)	228, 330, 535, 716, 966
NlaIII	CATG	2 cut(s)	634, 784
NlaIV	GGNNCC	3 cut(s)	26, 147, 414
NmuCI	GTSAC	1 cut(s)	1088
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	1129
PfeI	GAWTC	3 cut(s)	140, 861, 998
PkrI	GCNGC	9 cut(s)	137, 211, 214, 243, 255, 451, 577, 637, 751
PleI	GAGTC	1 cut(s)	1078
PpsI	GAGTC	1 cut(s)	1078
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	4 cut(s)	311, 359, 472, 612
PspGI	CCWGG	4 cut(s)	311, 359, 472, 612
PspN4I	GGNNCC	3 cut(s)	26, 147, 414
PspPI	GGNCC	4 cut(s)	24, 251, 272, 847
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	408
RseI	CAYNNNNRTG	2 cut(s)	986, 1133
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	4 cut(s)	786, 804, 1011, 1050
SatI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
Sau3AI	GATC	5 cut(s)	228, 330, 535, 716, 966
Sau96I	GGNCC	4 cut(s)	24, 251, 272, 847
SchI	GAGTC	1 cut(s)	1079
ScrFI	CCNGG	5 cut(s)	313, 361, 474, 614, 851
SduI	GDGCHC	2 cut(s)	442, 831
SfaNI	GCATC	3 cut(s)	682, 721, 894
SfcI	CTRYAG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	24, 847
SmiMI	CAYNNNNRTG	2 cut(s)	986, 1133
Sse9I	AATT	5 cut(s)	546, 680, 702, 984, 1056
SsiI	CCGC	6 cut(s)	66, 212, 242, 254, 449, 895
SspMI	CTAG	1 cut(s)	924
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	5 cut(s)	311, 359, 472, 612, 849
TaaI	ACNGT	1 cut(s)	1116
TaqI	TCGA	4 cut(s)	286, 715, 864, 912
TasI	AATT	5 cut(s)	546, 680, 702, 984, 1056
TauI	GCSGC	4 cut(s)	215, 244, 256, 452
TfiI	GAWTC	3 cut(s)	140, 861, 998
Tru1I	TTAA	4 cut(s)	786, 804, 1011, 1050
Tru9I	TTAA	4 cut(s)	786, 804, 1011, 1050
TscAI	CASTG	1 cut(s)	665
TseFI	GTSAC	1 cut(s)	1088
TseI	GCWGC	5 cut(s)	135, 209, 575, 635, 749
Tsp45I	GTSAC	1 cut(s)	1088
TspDTI	ATGAA	4 cut(s)	471, 576, 615, 639
TspGWI	ACGGA	2 cut(s)	959, 1123
TspRI	CASTG	1 cut(s)	665
VneI	GTGCAC	1 cut(s)	827
VpaK11BI	GGWCC	2 cut(s)	24, 847
XagI	CCTNNNNNAGG	2 cut(s)	407, 821
XapI	RAATTY	2 cut(s)	680, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	1129
XspI	CTAG	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.