RLG00000020860

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
69617766 .. 69621418
3653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020860

Sequence Viewer

Length: 1494 bp
ATGGCTGAAGTTTTAAGAATCTTGCAAAGCAGCTTCATCCCCAGTTTCCATTCACACCCCAAAAGCCATACATTTCAGTCACTCCCACTAAGTTTCCGAAGACACCCGATTCAGTGCTCAATCTCCACAACTGAAAGCACCAAAGCCACAGTGGCCCAGAAGATCCCTTGGGGCTGTGACATTGATTCCTTGGAAAACGCTTCAGCTCTGCAGAAATGGCTGACTGATTCGGGCCTCCCACCTCAGAAAATGGGCATTCAAAGAGTTGAGGTGGGGGAGAGAGGCCTTGTTGCTTTGAAGAATATAAGAAAGGGAGAGAAGCTGCTGTTTGTGCCTCCCTCTTTGTTCATCACTGCAGACTCAGAATGGACAAATAGGGAGGCTGGTAAGGTGTTGAAGCAAAATTCTGTACCAGACTGGCCATTACTAGCAACCTATCTGATTAGTGAAGCGAGTTACTTGAAATCTTCGAGATGGAACAACTATATATCTGCCTTACCAAGGCAGCCTTATTCACTTCTGTATTGGACTCGCGAAGAGCTTGATCGATACTTGGAGGCATCACAGATTAGGCAGAGGGCAATTGAAAGAGTTACTAATGTTGTTGGAACATACAATGATCTAAGGCTTAGGATATTCTCAAAGCACCCTGATTTATTTCCGGAAGAGGTATTCAACATAGAAACCTTCAAATGGTCATTTGGAATTCTTTTCTCACGCTTGGTTCGATTACCCTCAATGGATGGGAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGATACGTTTTTGGATTATGATAAATCATCCCAGGGAGTTGTTTTTACAACAGATAGGCCATATCAGCCAGGTGAGCAGGTCTTTATTTCCTATGGGAAAAAGTCCAATGGAGAGCTGTTGCTATCATATGGGTTTGTCCCAAGCAAGGGCACCAACCCTAGTGATTCCGTTGAGTTGTCAGTTTCACTTCGAAAATCTGACAAATGTTATAAGGAGAAGTTGGAAGCTCTGAGAAAGTATGGACTATCAGCTACAGAGTGTTTTCCTGTACGAATTACTGGCTGGCCATCGGAGCTAATGGCATTTGCTTATTTAGCTGTCAGCCCTCCAAGTATGAACAAACAATTTGAAGAGATGGCTGCCGCAGCATCGAACAAATCTACCGCCAGGAAGGAATTAAGATATCCTGAAATAGAAGAAGAAGTACTACAGTTCATATTGGATAGTTGTGAAGTTAGCATATCAAAGTATAACAAATTCTTACAGGCAAGTGGTTCAATGGATTTGGACGTGACATCTCCAAAGCAGCTAAACCGAAGGTTGTTTCTGAAACAGCTAGCGGTGGACTTGTCTACTAGTGAGCAGAGAATCCTATTCCGTGCTCAATATATACTGAGAAGGCAACTGAGGGATATACGAAAGGGTGAACTGAGAGCTCTGACGATCTTCAATGGGTTCAGGAAGTTTTTTAAGTGA
Functional Annotation

Protein Analysis

498

Amino Acids

56.91

Weight (kDa)

9.23

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 94 - 298 4.4e-12 SET domain
Rubis-subs-bind PF09273 331 - 464 8.5e-20 Rubisco LSMT substrate-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1008
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 947
AccI GTMKAC 1 cut(s) 1370
AccII CGCG 1 cut(s) 534
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 3 cut(s) 1161, 1182, 1358
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 2 cut(s) 419, 1082
AcsI RAATTY 3 cut(s) 403, 705, 1274
AcuI CTGAAG 2 cut(s) 27, 186
AfaI GTAC 3 cut(s) 411, 1068, 1224
AfiI CCNNNNNNNGG 4 cut(s) 501, 693, 943, 944
AhlI ACTAGT 1 cut(s) 1373
AjiI CACGTC 1 cut(s) 1309
AjnI CCWGG 3 cut(s) 828, 865, 1184
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
Alw21I GWGCWC 3 cut(s) 119, 1402, 1456
AlwI GGATC 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 6 cut(s) 153, 232, 283, 419, 854, 1082
ApeKI GCWGC 6 cut(s) 30, 322, 505, 1157, 1163, 1324
ApoI RAATTY 3 cut(s) 403, 705, 1274
AspS9I GGNCC 2 cut(s) 154, 232
AsuHPI GGTGA 2 cut(s) 881, 1454
AsuII TTCGAA 1 cut(s) 988
AsuNHI GCTAGC 1 cut(s) 1354
BaeGI GKGCMC 1 cut(s) 950
BalI TGGCCA 2 cut(s) 421, 1084
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 1456
BarI GAAGNNNNNNTAC 4 cut(s) 1206, 1209, 1238, 1241
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 3 cut(s) 119, 1402, 1456
BbvI GCAGC 6 cut(s) 42, 309, 517, 1144, 1175, 1336
BccI CCATC 4 cut(s) 468, 737, 1093, 1147
BciT130I CCWGG 3 cut(s) 830, 867, 1186
BciVI GTATCC 1 cut(s) 793
BcuI ACTAGT 1 cut(s) 1373
BfaI CTAG 4 cut(s) 428, 957, 1355, 1374
BfmI CTRYAG 4 cut(s) 209, 354, 1050, 1226
BfuAI ACCTGC 1 cut(s) 865
BfuI GTATCC 1 cut(s) 793
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 7 cut(s) 31, 323, 506, 1158, 1161, 1164, 1325
BlsI GCNGC 7 cut(s) 32, 324, 507, 1159, 1162, 1165, 1326
BmcAI AGTACT 1 cut(s) 1224
Bme1390I CCNGG 3 cut(s) 830, 867, 1186
BmgBI CACGTC 1 cut(s) 1309
BmgT120I GGNCC 2 cut(s) 154, 232
BmiI GGNNCC 2 cut(s) 762, 949
BmrFI CCNGG 3 cut(s) 830, 867, 1186
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 569, 1175
BmtI GCTAGC 1 cut(s) 1358
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 988
Bsa29I ATCGAT 1 cut(s) 547
BsaJI CCNNGG 7 cut(s) 167, 189, 500, 756, 764, 828, 829
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 4 cut(s) 501, 693, 943, 944
Bse1I ACTGG 3 cut(s) 42, 422, 1081
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 3 cut(s) 830, 867, 1186
BseCI ATCGAT 1 cut(s) 547
BseDI CCNNGG 7 cut(s) 167, 189, 500, 756, 764, 828, 829
BseGI GGATG 3 cut(s) 36, 748, 824
BseLI CCNNNNNNNGG 4 cut(s) 501, 693, 943, 944
BseMII CTCAG 6 cut(s) 257, 375, 1019, 1403, 1415, 1439
BseNI ACTGG 3 cut(s) 42, 422, 1081
BseSI GKGCMC 1 cut(s) 950
BseXI GCAGC 6 cut(s) 42, 309, 517, 1144, 1175, 1336
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 6 cut(s) 155, 234, 285, 421, 856, 1084
BshNI GGYRCC 1 cut(s) 947
BshVI ATCGAT 1 cut(s) 547
BsiHKAI GWGCWC 3 cut(s) 119, 1402, 1456
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 920
BslI CCNNNNNNNGG 4 cut(s) 501, 693, 943, 944
BsmFI GGGAC 1 cut(s) 920
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 6 cut(s) 155, 234, 285, 421, 856, 1084
Bsp119I TTCGAA 1 cut(s) 988
Bsp1286I GDGCHC 4 cut(s) 119, 950, 1402, 1456
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 4 cut(s) 162, 544, 619, 1461
Bsp68I TCGCGA 1 cut(s) 534
BspACI CCGC 3 cut(s) 1161, 1182, 1358
BspANI GGCC 6 cut(s) 155, 234, 285, 421, 856, 1084
BspCNI CTCAG 6 cut(s) 256, 374, 1020, 1404, 1416, 1440
BspDI ATCGAT 1 cut(s) 547
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 762, 949
BspMAI CTGCAG 2 cut(s) 213, 358
BspMI ACCTGC 1 cut(s) 865
BspOI GCTAGC 1 cut(s) 1358
BspPI GGATC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 988
BspT107I GGYRCC 1 cut(s) 947
BsrI ACTGG 3 cut(s) 42, 422, 1081
BssECI CCNNGG 7 cut(s) 167, 189, 500, 756, 764, 828, 829
BssMI GATC 4 cut(s) 162, 544, 619, 1461
BssT1I CCWWGG 5 cut(s) 167, 189, 500, 756, 764
Bst2UI CCWGG 3 cut(s) 830, 867, 1186
Bst4CI ACNGT 2 cut(s) 151, 1230
Bst6I CTCTTC 3 cut(s) 531, 660, 1143
BstBI TTCGAA 1 cut(s) 988
BstC8I GCNNGC 2 cut(s) 1082, 1356
BstDEI CTNAG 9 cut(s) 89, 243, 361, 623, 629, 1028, 1412, 1424, 1448
BstENI CCTNNNNNAGG 1 cut(s) 499
BstF5I GGATG 3 cut(s) 36, 748, 824
BstFNI CGCG 1 cut(s) 534
BstKTI GATC 4 cut(s) 165, 547, 622, 1464
BstMBI GATC 4 cut(s) 162, 544, 619, 1461
BstMWI GCNNNNNNNGC 8 cut(s) 152, 217, 331, 862, 871, 1090, 1112, 1163
BstNI CCWGG 3 cut(s) 830, 867, 1186
BstSCI CCNGG 3 cut(s) 828, 865, 1184
BstSFI CTRYAG 4 cut(s) 209, 354, 1050, 1226
BstSLI GKGCMC 1 cut(s) 950
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 6 cut(s) 42, 309, 517, 1144, 1175, 1336
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 547
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 6 cut(s) 155, 234, 285, 421, 856, 1084
BsuTUI ATCGAT 1 cut(s) 547
BtrI CACGTC 1 cut(s) 1309
BtsCI GGATG 3 cut(s) 36, 748, 824
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 3 cut(s) 119, 156, 351
BtuMI TCGCGA 1 cut(s) 534
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 2 cut(s) 1082, 1356
Cfr13I GGNCC 2 cut(s) 154, 232
ClaI ATCGAT 1 cut(s) 547
Csp6I GTAC 3 cut(s) 410, 1067, 1223
CviQI GTAC 3 cut(s) 410, 1067, 1223
DdeI CTNAG 9 cut(s) 89, 243, 361, 623, 629, 1028, 1412, 1424, 1448
DpnI GATC 4 cut(s) 164, 546, 621, 1463
DpnII GATC 4 cut(s) 162, 544, 619, 1461
EaeI YGGCCR 2 cut(s) 419, 1082
Eam1104I CTCTTC 3 cut(s) 531, 660, 1143
EarI CTCTTC 3 cut(s) 531, 660, 1143
Ecl136II GAGCTC 1 cut(s) 1454
Eco130I CCWWGG 5 cut(s) 167, 189, 500, 756, 764
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 1 cut(s) 1456
Eco32I GATATC 1 cut(s) 1202
Eco53kI GAGCTC 1 cut(s) 1454
Eco57I CTGAAG 2 cut(s) 27, 186
EcoICRI GAGCTC 1 cut(s) 1454
EcoNI CCTNNNNNAGG 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 705
EcoRII CCWGG 3 cut(s) 828, 865, 1184
EcoRV GATATC 1 cut(s) 1202
EcoT14I CCWWGG 5 cut(s) 167, 189, 500, 756, 764
EcoT38I GRGCYC 1 cut(s) 1456
ErhI CCWWGG 5 cut(s) 167, 189, 500, 756, 764
FalI AAGNNNNNCTT 4 cut(s) 493, 525, 740, 772
FaqI GGGAC 1 cut(s) 920
FauNDI CATATG 1 cut(s) 925
FblI GTMKAC 1 cut(s) 1370
Fnu4HI GCNGC 7 cut(s) 31, 323, 506, 1158, 1161, 1164, 1325
FokI GGATG 3 cut(s) 23, 755, 811
FriOI GRGCYC 1 cut(s) 1456
Fsp4HI GCNGC 7 cut(s) 31, 323, 506, 1158, 1161, 1164, 1325
FspBI CTAG 4 cut(s) 428, 957, 1355, 1374
GluI GCNGC 7 cut(s) 31, 323, 506, 1158, 1161, 1164, 1325
HaeIII GGCC 6 cut(s) 155, 234, 285, 421, 856, 1084
HapII CCGG 1 cut(s) 662
HinfI GANTC 9 cut(s) 18, 109, 185, 227, 359, 529, 781, 962, 1386
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 881, 1454
Hpy166II GTNNAC 3 cut(s) 1363, 1371, 1445
Hpy188I TCNGA 9 cut(s) 98, 246, 364, 441, 997, 1029, 1090, 1347, 1458
Hpy188III TCNNGA 5 cut(s) 471, 533, 662, 1205, 1477
Hpy8I GTNNAC 3 cut(s) 1363, 1371, 1445
HpyAV CCTTC 5 cut(s) 697, 742, 1183, 1329, 1410
HpyCH4III ACNGT 2 cut(s) 151, 1230
HpyCH4IV ACGT 2 cut(s) 803, 1308
HpyCH4V TGCA 3 cut(s) 25, 211, 356
HpyF10VI GCNNNNNNNGC 8 cut(s) 152, 217, 331, 862, 871, 1090, 1112, 1163
HpyF3I CTNAG 9 cut(s) 89, 243, 361, 623, 629, 1028, 1412, 1424, 1448
HpySE526I ACGT 2 cut(s) 803, 1308
Kpn2I TCCGGA 1 cut(s) 661
Kzo9I GATC 4 cut(s) 162, 544, 619, 1461
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 1 cut(s) 1090
Lsp1109I GCAGC 6 cut(s) 42, 309, 517, 1144, 1175, 1336
LweI GCATC 2 cut(s) 569, 1175
MaeI CTAG 4 cut(s) 428, 957, 1355, 1374
MaeII ACGT 2 cut(s) 803, 1308
MaeIII GTNAC 5 cut(s) 78, 176, 455, 592, 1309
MalI GATC 4 cut(s) 164, 546, 621, 1463
MboI GATC 4 cut(s) 162, 544, 619, 1461
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 4 cut(s) 119, 950, 1402, 1456
MlsI TGGCCA 2 cut(s) 421, 1084
MluCI AATT 7 cut(s) 403, 582, 705, 1071, 1142, 1193, 1274
MluNI TGGCCA 2 cut(s) 421, 1084
MlyI GAGTC 2 cut(s) 353, 523
MmeI TCCRAC 2 cut(s) 586, 999
Mox20I TGGCCA 2 cut(s) 421, 1084
MroI TCCGGA 1 cut(s) 661
MscI TGGCCA 2 cut(s) 421, 1084
MseI TTAA 3 cut(s) 14, 1196, 1488
MslI CAYNNNNRTG 1 cut(s) 789
Msp20I TGGCCA 2 cut(s) 421, 1084
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 3 cut(s) 830, 867, 1186
MunI CAATTG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 3 cut(s) 830, 867, 1186
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 8 cut(s) 152, 217, 331, 862, 871, 1090, 1112, 1163
NdeI CATATG 1 cut(s) 925
NdeII GATC 4 cut(s) 162, 544, 619, 1461
NheI GCTAGC 1 cut(s) 1354
NlaIV GGNNCC 2 cut(s) 762, 949
NmuCI GTSAC 3 cut(s) 78, 176, 1309
NruI TCGCGA 1 cut(s) 534
NspV TTCGAA 1 cut(s) 988
PasI CCCWGGG 1 cut(s) 829
PceI AGGCCT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 7 cut(s) 18, 109, 185, 227, 781, 962, 1386
PkrI GCNGC 7 cut(s) 32, 324, 507, 1159, 1162, 1165, 1326
PleI GAGTC 2 cut(s) 353, 523
PpsI GAGTC 2 cut(s) 353, 523
PsiI TTATAA 1 cut(s) 1008
Psp124BI GAGCTC 1 cut(s) 1456
Psp6I CCWGG 3 cut(s) 828, 865, 1184
PspGI CCWGG 3 cut(s) 828, 865, 1184
PspN4I GGNNCC 2 cut(s) 762, 949
PspPI GGNCC 2 cut(s) 154, 232
PstI CTGCAG 2 cut(s) 213, 358
PsuI RGATCY 1 cut(s) 162
RruI TCGCGA 1 cut(s) 534
RsaI GTAC 3 cut(s) 411, 1068, 1224
RsaNI GTAC 3 cut(s) 410, 1067, 1223
RseI CAYNNNNRTG 1 cut(s) 789
SacI GAGCTC 1 cut(s) 1456
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 3 cut(s) 14, 1196, 1488
SatI GCNGC 7 cut(s) 31, 323, 506, 1158, 1161, 1164, 1325
Sau3AI GATC 4 cut(s) 162, 544, 619, 1461
Sau96I GGNCC 2 cut(s) 154, 232
ScaI AGTACT 1 cut(s) 1224
SchI GAGTC 2 cut(s) 353, 523
ScrFI CCNGG 3 cut(s) 830, 867, 1186
SduI GDGCHC 4 cut(s) 119, 950, 1402, 1456
SfaNI GCATC 2 cut(s) 569, 1175
SfcI CTRYAG 4 cut(s) 209, 354, 1050, 1226
SfuI TTCGAA 1 cut(s) 988
SmiMI CAYNNNNRTG 1 cut(s) 789
SpeI ACTAGT 1 cut(s) 1373
Sse9I AATT 7 cut(s) 403, 582, 705, 1071, 1142, 1193, 1274
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 3 cut(s) 1161, 1182, 1358
SspMI CTAG 4 cut(s) 428, 957, 1355, 1374
SstI GAGCTC 1 cut(s) 1456
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 828, 865, 1184
StyI CCWWGG 5 cut(s) 167, 189, 500, 756, 764
TaaI ACNGT 2 cut(s) 151, 1230
TaiI ACGT 2 cut(s) 806, 1311
TaqI TCGA 5 cut(s) 470, 547, 727, 988, 1169
TasI AATT 7 cut(s) 403, 582, 705, 1071, 1142, 1193, 1274
TatI WGTACW 1 cut(s) 1222
TauI GCSGC 1 cut(s) 1163
TfiI GAWTC 7 cut(s) 18, 109, 185, 227, 781, 962, 1386
Tru1I TTAA 3 cut(s) 14, 1196, 1488
Tru9I TTAA 3 cut(s) 14, 1196, 1488
TscAI CASTG 3 cut(s) 119, 156, 358
TseFI GTSAC 3 cut(s) 78, 176, 1309
TseI GCWGC 6 cut(s) 30, 322, 505, 1157, 1163, 1324
Tsp45I GTSAC 3 cut(s) 78, 176, 1309
TspDTI ATGAA 4 cut(s) 25, 337, 1148, 1222
TspGWI ACGGA 2 cut(s) 955, 1385
TspRI CASTG 3 cut(s) 119, 156, 358
XagI CCTNNNNNAGG 1 cut(s) 499
XapI RAATTY 3 cut(s) 403, 705, 1274
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 1370
XspI CTAG 4 cut(s) 428, 957, 1355, 1374
ZrmI AGTACT 1 cut(s) 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.