Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

76586249 .. 76589451

Gene Structure 3203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG535800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGGGTTTAGCTTCCTTCAGGTCCCTCCCTTGTTTCACTTGCAGACCCAAACGCTCCATCTCCGCCACCAGACCCAACTCCCTCTCTCTTCCTTCCTCCACCATTGTTCGCGCTCAACAGGTTGCAATGGGCAGCGAATCGGAGCCGGTGAAAGACGAGCTGAAAATCAAGGAGTGGGAGGTGGGTATGTTTCACAACGAAGTTGCTGCGGCGCAGGGTATCAAGATCAGGAGGAGGCCGCCGACTGGGCCGCCCAAGCACTATGTTGGGCCTTTTGAGTTTCGATTGGAGAATGAGGGCAATACTCCCAGGAATATCTTGGAGGAGATCATATGGCACAAGGACACAGAAGTCGCCAGGTGGAGAGAGAAGAAGCCTCTGCATTCGTTATTGAAAGACCTGCAGAAGGCTCCTCCTGTTAGGGATTTTGTTGGAGCTCTCAGGGCGGCCAATGAAAGAACTGGACTGCCTGGGTTGATAGCTGAAGTGAAGAAAGCTTCTCCGAGTAGAGGAGTTTTGAGAGAGGATTTTGATCCGGTTGAAATTGCCCAAGCTTATGAAAGTGGGGGAGCTGCTTGTCTTAGTGTTTTGGCAGATGAAAAGTATTTTCAGGGAAGTTATGAAAACATGGCAGCAATAAGAAATGCTGGAGTTCAGTGTCCTCTGTTGTGCAAAGAATTTATTGTTGATGCTTGGCAAATTTACTATGCTCGATCCAAAGGTGCAGATGCTATTCTTTTGATTGCTGCTGTTTTACCTGACCTTGATATTGGTTACATGATTAAGATATGCAAGAAGCTTAAAATGGCTACTCTTGTTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

276

Amino Acids

30.7

Weight (kDa)

8.81

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IGPS	PF00218	108 - 276	8.7e-47	Indole-3-glycerol phosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	411
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	66, 212, 242, 254, 449
AclWI	GGATC	2 cut(s)	530, 711
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	680, 702
AcuI	CTGAAG	2 cut(s)	4, 507
AfiI	CCNNNNNNNGG	3 cut(s)	248, 409, 512
AgsI	TTSAA	2 cut(s)	397, 545
AjnI	CCWGG	3 cut(s)	311, 359, 472
AluBI	AGCT	8 cut(s)	14, 163, 440, 485, 500, 557, 575, 802
AluI	AGCT	8 cut(s)	14, 163, 440, 485, 500, 557, 575, 802
Alw21I	GWGCWC	1 cut(s)	442
AlwI	GGATC	2 cut(s)	530, 711
AoxI	GGCC	4 cut(s)	239, 251, 272, 450
ApeKI	GCWGC	5 cut(s)	135, 209, 575, 635, 749
ApoI	RAATTY	2 cut(s)	680, 702
AspLEI	GCGC	2 cut(s)	116, 217
AspS9I	GGNCC	3 cut(s)	24, 251, 272
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	3 cut(s)	313, 361, 474
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
BlsI	GCNGC	9 cut(s)	137, 211, 214, 243, 255, 451, 577, 637, 751
Bme1390I	CCNGG	3 cut(s)	313, 361, 474
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	24, 251, 272
BmiI	GGNNCC	3 cut(s)	26, 147, 414
BmrFI	CCNGG	3 cut(s)	313, 361, 474
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	682, 721
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	672
BsaBI	GATNNNNATC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	311, 473
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 409, 512
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	253, 469
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	313, 361, 474
BseDI	CCNNGG	2 cut(s)	311, 473
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	3 cut(s)	248, 409, 512
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	253, 469
BseRI	GAGGAG	4 cut(s)	250, 341, 405, 528
BseXI	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BsgI	GTGCAG	1 cut(s)	747
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	241, 253, 274, 452
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	2 cut(s)	149, 539
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	248, 409, 512
BsmFI	GGGAC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	241, 253, 274, 452
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	4 cut(s)	228, 330, 535, 716
BspACI	CCGC	5 cut(s)	66, 212, 242, 254, 449
BspANI	GGCC	4 cut(s)	241, 253, 274, 452
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	26, 147, 414
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	530, 711
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	253, 469
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	311, 473
BssMI	GATC	4 cut(s)	228, 330, 535, 716
Bst2UI	CCWGG	3 cut(s)	313, 361, 474
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	443, 584
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	116, 217
BstKTI	GATC	4 cut(s)	231, 333, 538, 719
BstMBI	GATC	4 cut(s)	228, 330, 535, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
BstNI	CCWGG	3 cut(s)	313, 361, 474
BstSCI	CCNGG	3 cut(s)	311, 359, 472
BstSFI	CTRYAG	1 cut(s)	404
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	5 cut(s)	147, 196, 562, 647, 736
BsuRI	GGCC	4 cut(s)	241, 253, 274, 452
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	2 cut(s)	116, 217
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	24, 251, 272
CviAII	CATG	2 cut(s)	631, 781
DdeI	CTNAG	2 cut(s)	443, 584
DpnI	GATC	4 cut(s)	230, 332, 537, 718
DpnII	GATC	4 cut(s)	228, 330, 535, 716
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	4, 507
EcoICRI	GAGCTC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	311, 359, 472
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	2 cut(s)	634, 784
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	2 cut(s)	630, 780
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
GlaI	GCGC	2 cut(s)	115, 216
GluI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	4 cut(s)	241, 253, 274, 452
HapII	CCGG	2 cut(s)	149, 539
HhaI	GCGC	2 cut(s)	116, 217
Hin1II	CATG	2 cut(s)	634, 784
Hin6I	GCGC	2 cut(s)	114, 215
HinP1I	GCGC	2 cut(s)	114, 215
HindIII	AAGCTT	3 cut(s)	498, 555, 800
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	149, 539
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	145, 507
Hpy188III	TCNNGA	2 cut(s)	226, 232
HpyAV	CCTTC	3 cut(s)	28, 105, 403
HpyCH4V	TGCA	7 cut(s)	45, 128, 385, 406, 675, 728, 795
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
HpyF3I	CTNAG	2 cut(s)	443, 584
Hsp92II	CATG	2 cut(s)	634, 784
HspAI	GCGC	2 cut(s)	114, 215
Kzo9I	GATC	4 cut(s)	228, 330, 535, 716
LmnI	GCTCC	5 cut(s)	62, 145, 418, 437, 572
Lsp1109I	GCAGC	5 cut(s)	147, 196, 562, 647, 736
LweI	GCATC	2 cut(s)	682, 721
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	4 cut(s)	230, 332, 537, 718
MboI	GATC	4 cut(s)	228, 330, 535, 716
MboII	GAAGA	3 cut(s)	83, 385, 505
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	3 cut(s)	546, 680, 702
MmeI	TCCRAC	1 cut(s)	415
MseI	TTAA	2 cut(s)	786, 804
MspI	CCGG	2 cut(s)	149, 539
MspR9I	CCNGG	3 cut(s)	313, 361, 474
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	3 cut(s)	313, 361, 474
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	250, 259, 446
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	4 cut(s)	228, 330, 535, 716
NlaIII	CATG	2 cut(s)	634, 784
NlaIV	GGNNCC	3 cut(s)	26, 147, 414
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	9 cut(s)	137, 211, 214, 243, 255, 451, 577, 637, 751
PpuMI	RGGWCCY	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	311, 359, 472
PspGI	CCWGG	3 cut(s)	311, 359, 472
PspN4I	GGNNCC	3 cut(s)	26, 147, 414
PspPI	GGNCC	3 cut(s)	24, 251, 272
PspPPI	RGGWCCY	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	786, 804
SatI	GCNGC	9 cut(s)	136, 210, 213, 242, 254, 450, 576, 636, 750
Sau3AI	GATC	4 cut(s)	228, 330, 535, 716
Sau96I	GGNCC	3 cut(s)	24, 251, 272
ScrFI	CCNGG	3 cut(s)	313, 361, 474
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	682, 721
SfcI	CTRYAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	546, 680, 702
SsiI	CCGC	5 cut(s)	66, 212, 242, 254, 449
SstI	GAGCTC	1 cut(s)	442
StyD4I	CCNGG	3 cut(s)	311, 359, 472
TaqI	TCGA	2 cut(s)	286, 715
TasI	AATT	3 cut(s)	546, 680, 702
TauI	GCSGC	4 cut(s)	215, 244, 256, 452
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	786, 804
Tru9I	TTAA	2 cut(s)	786, 804
TscAI	CASTG	1 cut(s)	665
TseI	GCWGC	5 cut(s)	135, 209, 575, 635, 749
TspDTI	ATGAA	4 cut(s)	471, 576, 615, 639
TspRI	CASTG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	2 cut(s)	680, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.