Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8091832.1

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

138 .. 594

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8091832.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggagggtttagcttccttcaggtccctcccttgtttcacttgcagacccaaacgctccatctccgccaccagacccaactccctctctcttccttcctccaccattgttcgcgctcaacaggttgcaatgggcagcgaatcggagccggtgaaagacgagctgaaaatcaaggagtgggaggtgggtatgtttcacaacgaagttgctgcggcgcagggtatcaagatcaggaggaggccgccgactgggccgcccaagcactatgttgggccttttgagtttcgattggagaatgagggcaatactcccaggaatatcttggaggagatcatatggcacaaggacacagaagtcgccagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004425 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

IGPS

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

9.1

Isoelectric Point (pI)

63.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
AccII	CGCG	1 cut(s)	114
AciI	CCGC	4 cut(s)	66, 212, 242, 254
AcuI	CTGAAG	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	2 cut(s)	14, 163
AluI	AGCT	2 cut(s)	14, 163
AoxI	GGCC	3 cut(s)	239, 251, 272
ApeKI	GCWGC	2 cut(s)	135, 209
AspLEI	GCGC	2 cut(s)	116, 217
AspS9I	GGNCC	3 cut(s)	24, 251, 272
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	147, 196
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	313, 361
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	5 cut(s)	136, 210, 213, 242, 254
BlsI	GCNGC	5 cut(s)	137, 211, 214, 243, 255
Bme1390I	CCNGG	2 cut(s)	313, 361
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	24, 251, 272
BmiI	GGNNCC	2 cut(s)	26, 147
BmrFI	CCNGG	2 cut(s)	313, 361
BmrI	ACTGGG	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	313, 361
BseDI	CCNNGG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	250, 341
BseXI	GCAGC	2 cut(s)	147, 196
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	241, 253, 274
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	3 cut(s)	241, 253, 274
Bsp143I	GATC	2 cut(s)	228, 330
BspACI	CCGC	4 cut(s)	66, 212, 242, 254
BspANI	GGCC	3 cut(s)	241, 253, 274
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	26, 147
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	228, 330
Bst2UI	CCWGG	2 cut(s)	313, 361
Bst6I	CTCTTC	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	116, 217
BstKTI	GATC	2 cut(s)	231, 333
BstMBI	GATC	2 cut(s)	228, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 259
BstNI	CCWGG	2 cut(s)	313, 361
BstSCI	CCNGG	1 cut(s)	311
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	147, 196
BsuRI	GGCC	3 cut(s)	241, 253, 274
CfoI	GCGC	2 cut(s)	116, 217
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	24, 251, 272
CviJI	RGCY	6 cut(s)	14, 148, 163, 241, 253, 274
CviKI_1	RGCY	6 cut(s)	14, 148, 163, 241, 253, 274
DpnI	GATC	2 cut(s)	230, 332
DpnII	GATC	2 cut(s)	228, 330
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	311
FaiI	YATR	4 cut(s)	191, 267, 335, 337
FaqI	GGGAC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	335
Fnu4HI	GCNGC	5 cut(s)	136, 210, 213, 242, 254
Fsp4HI	GCNGC	5 cut(s)	136, 210, 213, 242, 254
GlaI	GCGC	2 cut(s)	115, 216
GluI	GCNGC	5 cut(s)	136, 210, 213, 242, 254
HaeIII	GGCC	3 cut(s)	241, 253, 274
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	2 cut(s)	116, 217
Hin6I	GCGC	2 cut(s)	114, 215
HinP1I	GCGC	2 cut(s)	114, 215
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	2 cut(s)	226, 232
HpyAV	CCTTC	2 cut(s)	28, 105
HpyCH4V	TGCA	2 cut(s)	45, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 259
HspAI	GCGC	2 cut(s)	114, 215
Kzo9I	GATC	2 cut(s)	228, 330
LmnI	GCTCC	2 cut(s)	62, 145
Lsp1109I	GCAGC	2 cut(s)	147, 196
MalI	GATC	2 cut(s)	230, 332
MboI	GATC	2 cut(s)	228, 330
MboII	GAAGA	1 cut(s)	83
MnlI	CCTC	8 cut(s)	38, 95, 109, 175, 228, 231, 292, 319
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	313, 361
MvaI	CCWGG	2 cut(s)	313, 361
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	250, 259
NdeI	CATATG	1 cut(s)	335
NdeII	GATC	2 cut(s)	228, 330
NlaIV	GGNNCC	2 cut(s)	26, 147
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	137, 211, 214, 243, 255
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	26, 147
PspPI	GGNCC	3 cut(s)	24, 251, 272
PspPPI	RGGWCCY	1 cut(s)	24
SatI	GCNGC	5 cut(s)	136, 210, 213, 242, 254
Sau3AI	GATC	2 cut(s)	228, 330
Sau96I	GGNCC	3 cut(s)	24, 251, 272
ScrFI	CCNGG	2 cut(s)	313, 361
SetI	ASST	5 cut(s)	16, 26, 126, 165, 186
SinI	GGWCC	1 cut(s)	24
SsiI	CCGC	4 cut(s)	66, 212, 242, 254
StyD4I	CCNGG	1 cut(s)	311
TaqI	TCGA	1 cut(s)	286
TauI	GCSGC	3 cut(s)	215, 244, 256
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	2 cut(s)	135, 209
VpaK11BI	GGWCC	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.