Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003417.1

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

11342 .. 12768

Gene Structure 1427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003417.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggctgaagtttcaagaatcctgcaaagcagcttcatcaccagtttccattcacaccccaaaagccatacatttcagtcacacccaccaagtttccgaagacacccaattcagtgctcaatctccacaactgaaagcaccaaagccagagtggcccagaagatcccttggggctgtgacattgattccttggaaaacgcttcagctctgcagaaatggctgactgattcaggcctcccacctcagaaaatgggcattcaaagagttgaggtgggggagagaggccttgttgctttgaagaatataagaaagggggagaagctgctgtttgtgcctccctctttgttcatcactgcagactcggaatggacaaatagggaggctggtaaggtgttgaagcaaaattctgtaccagactggccattactagcaacctatctgattagtgaagcgagttacttgaaatcttcgagatggaacaactatatatctgccttaccaaggcagccttattcacttctgtattggactcgcgaagagcttgatcgatacttggaggcatcacagattaggcagagggcaattgaaagagttactaatgttgttggaacatacaatgacctaaggcttaggatattctcaaagcaccctgatttatttccggaagaggtattcaacatagaaaccttcaaatggtcatttggaattcttttctcacgcttggtaagtaactacttggatgataattccatagtaaaatttgcttctgcttatgcttctacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

261

Amino Acids

29.96

Weight (kDa)

9.28

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	661
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	3 cut(s)	403, 705, 758
AcuI	CTGAAG	2 cut(s)	27, 186
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	501, 693
AgsI	TTSAA	8 cut(s)	15, 260, 298, 397, 463, 587, 676, 691
AluBI	AGCT	4 cut(s)	33, 206, 322, 541
AluI	AGCT	4 cut(s)	33, 206, 322, 541
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	4 cut(s)	153, 232, 283, 419
ApeKI	GCWGC	3 cut(s)	30, 322, 505
ApoI	RAATTY	3 cut(s)	403, 705, 758
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	623
BalI	TGGCCA	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	42, 309, 517
BccI	CCATC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	2 cut(s)	209, 354
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	31, 323, 506
BlsI	GCNGC	3 cut(s)	32, 324, 507
BmgT120I	GGNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	167, 189, 500
BsaWI	WCCGGW	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 693
Bse1I	ACTGG	2 cut(s)	42, 422
Bse21I	CCTNAGG	1 cut(s)	623
BseAI	TCCGGA	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	3 cut(s)	167, 189, 500
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	2 cut(s)	501, 693
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	42, 422
BseXI	GCAGC	3 cut(s)	42, 309, 517
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	4 cut(s)	155, 234, 285, 421
BshVI	ATCGAT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	501, 693
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	4 cut(s)	155, 234, 285, 421
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	2 cut(s)	162, 544
Bsp68I	TCGCGA	1 cut(s)	534
BspANI	GGCC	4 cut(s)	155, 234, 285, 421
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	534
BspMAI	CTGCAG	2 cut(s)	213, 358
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	42, 422
BssECI	CCNNGG	3 cut(s)	167, 189, 500
BssMI	GATC	2 cut(s)	162, 544
BssT1I	CCWWGG	3 cut(s)	167, 189, 500
Bst6I	CTCTTC	2 cut(s)	531, 660
BstDEI	CTNAG	3 cut(s)	243, 623, 629
BstENI	CCTNNNNNAGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	745
BstFNI	CGCG	1 cut(s)	534
BstKTI	GATC	2 cut(s)	165, 547
BstMBI	GATC	2 cut(s)	162, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 217, 331
BstSFI	CTRYAG	2 cut(s)	209, 354
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	42, 309, 517
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	547
Bsu36I	CCTNAGG	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	155, 234, 285, 421
BsuTUI	ATCGAT	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	119, 351
BtuMI	TCGCGA	1 cut(s)	534
Cfr13I	GGNCC	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	410
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	243, 623, 629
DpnI	GATC	2 cut(s)	164, 546
DpnII	GATC	2 cut(s)	162, 544
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	2 cut(s)	531, 660
EarI	CTCTTC	2 cut(s)	531, 660
Eco130I	CCWWGG	3 cut(s)	167, 189, 500
Eco147I	AGGCCT	2 cut(s)	234, 285
Eco57I	CTGAAG	2 cut(s)	27, 186
Eco81I	CCTNAGG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	705
EcoT14I	CCWWGG	3 cut(s)	167, 189, 500
ErhI	CCWWGG	3 cut(s)	167, 189, 500
FaiI	YATR	9 cut(s)	69, 305, 486, 488, 613, 680, 752, 774, 784
FalI	AAGNNNNNCTT	2 cut(s)	493, 525
Fnu4HI	GCNGC	3 cut(s)	31, 323, 506
FokI	GGATG	1 cut(s)	752
Fsp4HI	GCNGC	3 cut(s)	31, 323, 506
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	3 cut(s)	31, 323, 506
HaeIII	GGCC	4 cut(s)	155, 234, 285, 421
HapII	CCGG	1 cut(s)	662
HinfI	GANTC	5 cut(s)	18, 185, 227, 359, 529
HpaII	CCGG	1 cut(s)	662
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	98, 246, 364, 441
Hpy188III	TCNNGA	4 cut(s)	15, 471, 533, 662
HpyAV	CCTTC	1 cut(s)	697
HpyCH4V	TGCA	3 cut(s)	25, 211, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 217, 331
HpyF3I	CTNAG	3 cut(s)	243, 623, 629
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	162, 544
LguI	GCTCTTC	1 cut(s)	531
Lsp1109I	GCAGC	3 cut(s)	42, 309, 517
LweI	GCATC	1 cut(s)	569
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	5 cut(s)	78, 176, 455, 592, 728
MalI	GATC	2 cut(s)	164, 546
MboI	GATC	2 cut(s)	162, 544
MboII	GAAGA	6 cut(s)	111, 172, 310, 459, 548, 677
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	421
MluCI	AATT	6 cut(s)	108, 403, 582, 705, 745, 758
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	353, 523
MmeI	TCCRAC	1 cut(s)	586
Mox20I	TGGCCA	1 cut(s)	421
MroI	TCCGGA	1 cut(s)	661
MscI	TGGCCA	1 cut(s)	421
Msp20I	TGGCCA	1 cut(s)	421
MspI	CCGG	1 cut(s)	662
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	255
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	3 cut(s)	152, 217, 331
NdeII	GATC	2 cut(s)	162, 544
NmuCI	GTSAC	2 cut(s)	78, 176
NruI	TCGCGA	1 cut(s)	534
PceI	AGGCCT	2 cut(s)	234, 285
PciSI	GCTCTTC	1 cut(s)	531
PctI	GAATGC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	18, 185, 227
PkrI	GCNGC	3 cut(s)	32, 324, 507
PleI	GAGTC	2 cut(s)	353, 523
PpsI	GAGTC	2 cut(s)	353, 523
PspPI	GGNCC	1 cut(s)	154
PstI	CTGCAG	2 cut(s)	213, 358
PsuI	RGATCY	1 cut(s)	162
RruI	TCGCGA	1 cut(s)	534
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SapI	GCTCTTC	1 cut(s)	531
SatI	GCNGC	3 cut(s)	31, 323, 506
Sau3AI	GATC	2 cut(s)	162, 544
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	353, 523
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	569
SfcI	CTRYAG	2 cut(s)	209, 354
Sse9I	AATT	6 cut(s)	108, 403, 582, 705, 745, 758
SseBI	AGGCCT	2 cut(s)	234, 285
SspMI	CTAG	1 cut(s)	428
StuI	AGGCCT	2 cut(s)	234, 285
StyI	CCWWGG	3 cut(s)	167, 189, 500
TaqI	TCGA	2 cut(s)	470, 547
TasI	AATT	6 cut(s)	108, 403, 582, 705, 745, 758
TfiI	GAWTC	3 cut(s)	18, 185, 227
TscAI	CASTG	2 cut(s)	119, 358
TseFI	GTSAC	2 cut(s)	78, 176
TseI	GCWGC	3 cut(s)	30, 322, 505
Tsp45I	GTSAC	2 cut(s)	78, 176
TspDTI	ATGAA	2 cut(s)	25, 337
TspRI	CASTG	2 cut(s)	119, 358
XagI	CCTNNNNNAGG	1 cut(s)	499
XapI	RAATTY	3 cut(s)	403, 705, 758
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.