Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004294

Physical Location & Seq

Genomic Coordinates Forward (+)

20699233 .. 20703261

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G196100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCTGAAGCTTCAAGAGTTCTGCAGACCACTCTCATTCCCAGCTTCCATCCACAACACAGAAGTCCCATATTTCAGTCACTCCCATTGAATTTCCGTAGAAACCCAATTCAGTGCACAGTCTCCACAAGTAACAGCACCAAAGCCACAGTGCCCCAGAAAATCCCATGGGGCTGTGAAAGTGATTCTTTGGAAAACGCTTCTGCCCTGCAGAAATGGCTGACTGACTCGGGCCTTCCACCCCAGAAAATGGCCCTGCAAAAAGTGGAAGTTGGGGAGAGAGGACTGGTTGCTTTGAAGAATATAAGGAAGGGGGAGAAGCTGCTCTTTGTGCCTCCCTCTCTGTTTATCACTGCAGACTCAGAGTGGACTTGTGGGGAGGCTGGTAAGGTGTTGAAGCAAAATGGTGTGCCTGACTGGCCATTTCTTGCAACCTATCTGATTAGTGAAGCAAGTTCCCTTGAATCTTCTAGATGGAGCAACTATATTTCTGCCTTACCAAGACAGCCTTATTCACTTCTGTATTGGACTCGCGAAGAACTTGATCGGTATTTGGAAGCATCACAAATTAGACAACGGGCAATCGAAAGAGTTACTAATGTTGTTGGAACATACAATGATTTAAGGCTTAGAATTTTCTCCAAGTATCCTGCTTTATTTCCTGAAGAGGTATTCAACATAGAAACCTTCAAATGGTCATTTGGAATTCTTTTCTCACGCTTGGTTCGGTTACCCTCGTTGGGTGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAACCATTGTTGTGAGGTAGACGCATTTTTGGACTACGATAAATCATCACAGGGAGTTGTCTTTTCAACAGATGTGTCATATGAGCCAGGTGAGCAGGTTTTTATTTCCTATGGCAAGAAATCTAATGGAGAGCTACTGTTATCCTATGGGTTTGTCCCAAGGGAGGGCACCAACCCTAGAGATTCTGTTGAGTTGTCACTTTCCATTTCAAAATCTGACAAATGTTATAAGGAGAAGTTGGAAGCTTTGAGAAAGCATGGACTATCAGCATCTCAATGTTATCCTATACAAGTCACTGGTTGGCCACTGGAGCTAATGGCATATGCTTATTTAGCCGTCAGTCCTCCAAGTATGAGTGGACAATTTGAAGAGATGGCTGCTGCAGCATCCAACAAATCTACCACCAAGAAGGATTTAAGATACAGTGAAATAGAGGAAGAAGCGCTTCAGTTCATATTGGACAGTTGTGAAGTTAGCATATCAAAGTATAACAAATTCTTACAGGCAAGTGGATCAATGGATTTGGATGTGACATCTCCGAAGCAACTAAACCGAAGGTTGTTTCTGAAACAGCTAGCAGTAGACTTGTCTACCAGTGAACGGAGAATCCTATTTCGTGCTCAATACATACTGAGAAGGAGATTGAGGGATATGAGAAGAGGTGAACTGAGAGCTCTAACAATCTTCAACGGGTTCAGGAAGTTTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

498

Amino Acids

56.49

Weight (kDa)

9.04

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07670 AT3G07670
fragaria_vesca	FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490 FvH4_6g40490
malus_domestica	MD17G1118300.v1.1
prunus_persica	Prupe.3G196100_v2.0.a1 Prupe.3G196100_v2.0.a1
pyrus_communis	pycom17g10880
rosa_chinensis	RchiOBHm_Chr2g0155741 RchiOBHm_Chr2g0155751
rosa_laevigata	RLG00000020860
rosa_multiflora	Rmu_co8091832.1_g000001 Rmu_sc0002712.1_g000018 Rmu_sc0003417.1_g000003 Rmu_sc0011953.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093510
rosa_rugosa	Rorug02G0449800
rosa_samantha	Rh2AG515700 Rh2AG515800 Rh2BG526700 Rh2BG526800 Rh2CG500700 Rh2CG500800 Rh2DG535700 Rh2DG535800
rosa_wichuraiana	Rw2G042410 Rw2G042420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1008
Acc36I	ACCTGC	1 cut(s)	865
AccB1I	GGYRCC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccI	GTMKAC	3 cut(s)	798, 1362, 1370
AccII	CGCG	1 cut(s)	534
AclWI	GGATC	1 cut(s)	1300
AcoI	YGGCCR	2 cut(s)	419, 1082
AcsI	RAATTY	4 cut(s)	91, 633, 705, 1274
AcuI	CTGAAG	3 cut(s)	27, 684, 1211
AfeI	AGCGCT	1 cut(s)	1224
AfiI	CCNNNNNNNGG	6 cut(s)	250, 693, 740, 943, 944, 1380
AjnI	CCWGG	1 cut(s)	865
AloI	GAACNNNNNNTCC	2 cut(s)	1371, 1403
AluBI	AGCT	8 cut(s)	11, 45, 322, 913, 1025, 1093, 1354, 1454
AluI	AGCT	8 cut(s)	11, 45, 322, 913, 1025, 1093, 1354, 1454
Alw21I	GWGCWC	3 cut(s)	119, 1402, 1456
Alw26I	GTCTC	1 cut(s)	127
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	1300
Ama87I	CYCGRG	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	1224
AoxI	GGCC	4 cut(s)	232, 252, 419, 1082
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	4 cut(s)	322, 1157, 1160, 1163
ApoI	RAATTY	4 cut(s)	91, 633, 705, 1274
Asp700I	GAANNNNTTC	2 cut(s)	1224, 1484
AspLEI	GCGC	1 cut(s)	1225
AspS9I	GGNCC	2 cut(s)	232, 253
AsuHPI	GGTGA	2 cut(s)	881, 1454
AsuNHI	GCTAGC	1 cut(s)	1354
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	3 cut(s)	119, 156, 950
BalI	TGGCCA	2 cut(s)	421, 1084
BanI	GGYRCC	1 cut(s)	947
BanII	GRGCYC	1 cut(s)	1456
Bbv12I	GWGCWC	3 cut(s)	119, 1402, 1456
BbvI	GCAGC	4 cut(s)	309, 1144, 1147, 1175
BccI	CCATC	3 cut(s)	57, 468, 1147
BceAI	ACGGC	1 cut(s)	1100
BciT130I	CCWGG	1 cut(s)	867
BciVI	GTATCC	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	3 cut(s)	471, 957, 1355
BfmI	CTRYAG	4 cut(s)	23, 209, 354, 1161
BfoI	RGCGCY	1 cut(s)	1226
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	323, 1158, 1161, 1164
BlsI	GCNGC	4 cut(s)	324, 1159, 1162, 1165
Bme1390I	CCNGG	1 cut(s)	867
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	232, 253
BmiI	GGNNCC	2 cut(s)	762, 949
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	3 cut(s)	569, 1058, 1175
BmtI	GCTAGC	1 cut(s)	1358
BpmI	CTGGAG	1 cut(s)	1109
BsaJI	CCNNGG	4 cut(s)	167, 756, 764, 938
Bsc4I	CCNNNNNNNGG	6 cut(s)	250, 693, 740, 943, 944, 1380
Bse1I	ACTGG	5 cut(s)	291, 422, 1081, 1092, 1374
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	4 cut(s)	167, 756, 764, 938
BseGI	GGATG	3 cut(s)	49, 1166, 1312
BseLI	CCNNNNNNNGG	6 cut(s)	250, 693, 740, 943, 944, 1380
BseMII	CTCAG	3 cut(s)	375, 1403, 1439
BseNI	ACTGG	5 cut(s)	291, 422, 1081, 1092, 1374
BseSI	GKGCMC	3 cut(s)	119, 156, 950
BseXI	GCAGC	4 cut(s)	309, 1144, 1147, 1175
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	4 cut(s)	234, 254, 421, 1084
BshNI	GGYRCC	1 cut(s)	947
BsiHKAI	GWGCWC	3 cut(s)	119, 1402, 1456
BsiHKCI	CYCGRG	1 cut(s)	229
BslFI	GGGAC	2 cut(s)	51, 920
BslI	CCNNNNNNNGG	6 cut(s)	250, 693, 740, 943, 944, 1380
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	2 cut(s)	51, 920
BsnI	GGCC	4 cut(s)	234, 254, 421, 1084
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	5 cut(s)	119, 156, 950, 1402, 1456
Bsp143I	GATC	2 cut(s)	544, 1292
Bsp19I	CCATGG	1 cut(s)	167
Bsp68I	TCGCGA	1 cut(s)	534
BspANI	GGCC	4 cut(s)	234, 254, 421, 1084
BspCNI	CTCAG	3 cut(s)	374, 1404, 1440
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	2 cut(s)	762, 949
BspMAI	CTGCAG	4 cut(s)	27, 213, 358, 1165
BspMI	ACCTGC	1 cut(s)	865
BspOI	GCTAGC	1 cut(s)	1358
BspPI	GGATC	1 cut(s)	1300
BspT107I	GGYRCC	1 cut(s)	947
BsrI	ACTGG	5 cut(s)	291, 422, 1081, 1092, 1374
BssECI	CCNNGG	4 cut(s)	167, 756, 764, 938
BssMI	GATC	2 cut(s)	544, 1292
BssT1I	CCWWGG	4 cut(s)	167, 756, 764, 938
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	5 cut(s)	121, 151, 918, 1205, 1244
Bst6I	CTCTTC	3 cut(s)	660, 1143, 1432
BstC8I	GCNNGC	1 cut(s)	1356
BstDEI	CTNAG	4 cut(s)	361, 629, 1412, 1448
BstDSI	CCRYGG	1 cut(s)	167
BstEII	GGTNACC	1 cut(s)	729
BstF5I	GGATG	3 cut(s)	49, 1166, 1312
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	1226
BstHHI	GCGC	1 cut(s)	1225
BstKTI	GATC	2 cut(s)	547, 1295
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	544, 1292
BstMWI	GCNNNNNNNGC	7 cut(s)	217, 331, 418, 871, 1090, 1112, 1163
BstNI	CCWGG	1 cut(s)	867
BstPI	GGTNACC	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	865
BstSFI	CTRYAG	4 cut(s)	23, 209, 354, 1161
BstSLI	GKGCMC	3 cut(s)	119, 156, 950
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	309, 1144, 1147, 1175
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	234, 254, 421, 1084
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	49, 1166, 1312
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	7 cut(s)	119, 156, 351, 1074, 1085, 1210, 1381
BtuMI	TCGCGA	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	1 cut(s)	1356
CfoI	GCGC	1 cut(s)	1225
Cfr13I	GGNCC	2 cut(s)	232, 253
CseI	GACGC	1 cut(s)	809
CviAII	CATG	2 cut(s)	168, 1037
DdeI	CTNAG	4 cut(s)	361, 629, 1412, 1448
DpnI	GATC	2 cut(s)	546, 1294
DpnII	GATC	2 cut(s)	544, 1292
EaeI	YGGCCR	2 cut(s)	419, 1082
Eam1104I	CTCTTC	3 cut(s)	660, 1143, 1432
EarI	CTCTTC	3 cut(s)	660, 1143, 1432
Ecl136II	GAGCTC	1 cut(s)	1454
Eco130I	CCWWGG	4 cut(s)	167, 756, 764, 938
Eco24I	GRGCYC	1 cut(s)	1456
Eco47III	AGCGCT	1 cut(s)	1224
Eco53kI	GAGCTC	1 cut(s)	1454
Eco57I	CTGAAG	3 cut(s)	27, 684, 1211
Eco88I	CYCGRG	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	1454
EcoO65I	GGTNACC	1 cut(s)	729
EcoRI	GAATTC	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	4 cut(s)	167, 756, 764, 938
EcoT38I	GRGCYC	1 cut(s)	1456
ErhI	CCWWGG	4 cut(s)	167, 756, 764, 938
FaeI	CATG	2 cut(s)	171, 1040
FaqI	GGGAC	2 cut(s)	51, 920
FatI	CATG	2 cut(s)	167, 1036
FauNDI	CATATG	2 cut(s)	859, 1102
FblI	GTMKAC	3 cut(s)	798, 1362, 1370
Fnu4HI	GCNGC	4 cut(s)	323, 1158, 1161, 1164
FokI	GGATG	3 cut(s)	36, 1153, 1319
FriOI	GRGCYC	1 cut(s)	1456
Fsp4HI	GCNGC	4 cut(s)	323, 1158, 1161, 1164
FspBI	CTAG	3 cut(s)	471, 957, 1355
GlaI	GCGC	1 cut(s)	1224
GluI	GCNGC	4 cut(s)	323, 1158, 1161, 1164
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	1109
HaeII	RGCGCY	1 cut(s)	1226
HaeIII	GGCC	4 cut(s)	234, 254, 421, 1084
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	1225
Hin1II	CATG	2 cut(s)	171, 1040
Hin6I	GCGC	1 cut(s)	1223
HinP1I	GCGC	1 cut(s)	1223
HindIII	AAGCTT	2 cut(s)	9, 1023
HinfI	GANTC	7 cut(s)	185, 227, 359, 464, 529, 962, 1386
HphI	GGTGA	2 cut(s)	881, 1454
Hpy166II	GTNNAC	8 cut(s)	117, 369, 799, 1139, 1363, 1371, 1379, 1445
Hpy188I	TCNGA	5 cut(s)	364, 441, 997, 1320, 1347
Hpy188III	TCNNGA	5 cut(s)	15, 471, 533, 662, 1477
Hpy8I	GTNNAC	8 cut(s)	117, 369, 799, 1139, 1363, 1371, 1379, 1445
HpyAV	CCTTC	6 cut(s)	245, 304, 697, 1183, 1329, 1410
HpyCH4III	ACNGT	5 cut(s)	121, 151, 918, 1205, 1244
HpyCH4V	TGCA	7 cut(s)	25, 117, 211, 259, 356, 431, 1163
HpyF10VI	GCNNNNNNNGC	7 cut(s)	217, 331, 418, 871, 1090, 1112, 1163
HpyF3I	CTNAG	4 cut(s)	361, 629, 1412, 1448
Hsp92II	CATG	2 cut(s)	171, 1040
HspAI	GCGC	1 cut(s)	1223
Kzo9I	GATC	2 cut(s)	544, 1292
LmnI	GCTCC	2 cut(s)	477, 1090
Lsp1109I	GCAGC	4 cut(s)	309, 1144, 1147, 1175
LweI	GCATC	3 cut(s)	569, 1058, 1175
MaeI	CTAG	3 cut(s)	471, 957, 1355
MaeIII	GTNAC	7 cut(s)	78, 131, 592, 729, 975, 1072, 1309
MalI	GATC	2 cut(s)	546, 1294
MboI	GATC	2 cut(s)	544, 1292
MboII	GAAGA	8 cut(s)	310, 459, 548, 677, 1160, 1229, 1449, 1456
MhlI	GDGCHC	5 cut(s)	119, 156, 950, 1402, 1456
MlsI	TGGCCA	2 cut(s)	421, 1084
MluCI	AATT	7 cut(s)	91, 108, 567, 633, 705, 1142, 1274
MluNI	TGGCCA	2 cut(s)	421, 1084
MlyI	GAGTC	3 cut(s)	221, 353, 523
MmeI	TCCRAC	3 cut(s)	586, 999, 1194
Mox20I	TGGCCA	2 cut(s)	421, 1084
MroXI	GAANNNNTTC	2 cut(s)	1224, 1484
MscI	TGGCCA	2 cut(s)	421, 1084
MseI	TTAA	2 cut(s)	623, 1196
MslI	CAYNNNNRTG	2 cut(s)	789, 1054
Msp20I	TGGCCA	2 cut(s)	421, 1084
MspR9I	CCNGG	1 cut(s)	867
MvaI	CCWGG	1 cut(s)	867
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	7 cut(s)	217, 331, 418, 871, 1090, 1112, 1163
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	2 cut(s)	859, 1102
NdeII	GATC	2 cut(s)	544, 1292
NheI	GCTAGC	1 cut(s)	1354
NlaIII	CATG	2 cut(s)	171, 1040
NlaIV	GGNNCC	2 cut(s)	762, 949
NmuCI	GTSAC	4 cut(s)	78, 975, 1072, 1309
NruI	TCGCGA	1 cut(s)	534
PdmI	GAANNNNTTC	2 cut(s)	1224, 1484
PfeI	GAWTC	4 cut(s)	185, 464, 962, 1386
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	324, 1159, 1162, 1165
PleI	GAGTC	3 cut(s)	221, 353, 523
PpsI	GAGTC	3 cut(s)	221, 353, 523
PsiI	TTATAA	1 cut(s)	1008
Psp124BI	GAGCTC	1 cut(s)	1456
Psp6I	CCWGG	1 cut(s)	865
PspEI	GGTNACC	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	2 cut(s)	762, 949
PspPI	GGNCC	2 cut(s)	232, 253
PstI	CTGCAG	4 cut(s)	27, 213, 358, 1165
RruI	TCGCGA	1 cut(s)	534
RseI	CAYNNNNRTG	2 cut(s)	789, 1054
SacI	GAGCTC	1 cut(s)	1456
SaqAI	TTAA	2 cut(s)	623, 1196
SatI	GCNGC	4 cut(s)	323, 1158, 1161, 1164
Sau3AI	GATC	2 cut(s)	544, 1292
Sau96I	GGNCC	2 cut(s)	232, 253
SchI	GAGTC	3 cut(s)	221, 353, 523
ScrFI	CCNGG	1 cut(s)	867
SduI	GDGCHC	5 cut(s)	119, 156, 950, 1402, 1456
SfaNI	GCATC	3 cut(s)	569, 1058, 1175
SfcI	CTRYAG	4 cut(s)	23, 209, 354, 1161
SmiMI	CAYNNNNRTG	2 cut(s)	789, 1054
Sse9I	AATT	7 cut(s)	91, 108, 567, 633, 705, 1142, 1274
SspMI	CTAG	3 cut(s)	471, 957, 1355
SstI	GAGCTC	1 cut(s)	1456
StyD4I	CCNGG	1 cut(s)	865
StyI	CCWWGG	4 cut(s)	167, 756, 764, 938
TaaI	ACNGT	5 cut(s)	121, 151, 918, 1205, 1244
TaqI	TCGA	1 cut(s)	585
TasI	AATT	7 cut(s)	91, 108, 567, 633, 705, 1142, 1274
TfiI	GAWTC	4 cut(s)	185, 464, 962, 1386
Tru1I	TTAA	2 cut(s)	623, 1196
Tru9I	TTAA	2 cut(s)	623, 1196
TscAI	CASTG	7 cut(s)	119, 156, 358, 1081, 1092, 1210, 1381
TseFI	GTSAC	4 cut(s)	78, 975, 1072, 1309
TseI	GCWGC	4 cut(s)	322, 1157, 1160, 1163
Tsp45I	GTSAC	4 cut(s)	78, 975, 1072, 1309
TspDTI	ATGAA	1 cut(s)	1222
TspGWI	ACGGA	2 cut(s)	86, 1396
TspRI	CASTG	7 cut(s)	119, 156, 358, 1081, 1092, 1210, 1381
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	115
XapI	RAATTY	4 cut(s)	91, 633, 705, 1274
XbaI	TCTAGA	1 cut(s)	470
XmiI	GTMKAC	3 cut(s)	798, 1362, 1370
XmnI	GAANNNNTTC	2 cut(s)	1224, 1484
XspI	CTAG	3 cut(s)	471, 957, 1355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.