Rmu_sc0002712.1_g000018

Ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002712.1
Physical Location & Seq
Forward (+)
48207 .. 52344
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002712.1_g000018.1.cds

Sequence Viewer

Length: 1746 bp
atggctgaagtttcaagaatcttgcaaagcagcttgatccccagtttccattcacacctcaaaagccatacatttcagtcacacccaccaagtttccgaagacacccaattcagtgctcaatctccacaactgaaagcaccaaagccagagtggcccagaagatcccttggggctgtgacattgattccttggaaaacgcttcagctctgcagaaatggctgactgattcaggcctcccacctcagaaaatgggcattcaaagagttgaggtgggggagagaggccttgttgctttgaagaatataagaaagggagagaagctgctgtttgtgcctccgtctttgttcatcactgcagactcggaatggacaaatagggaggctggtaaggtgttgaagcaaaattctgtaccagactggccattactagcaacctatctgattagtgaagcgagttacttgaaggagaagctgctgtttgtgcctccctctttgttcatcactgcagactcggaatggacaaatagggaggctggtaaggtgttgaagagagaagctgctgtttgtgcctccgtctttgttcatcactgcagactcggtaagattttcgcaaacaaaactacgcgaaaggaggctggtaaggtgttgaagcaaaattctgtaccagactggccattactagcaacctatctgattagtgaagcgagttacttgaaatcttcgagatggaacaactatatatctgccttaccaaggcagccttattcacttctgtattggactcgcgaagagcttgatcgatacttggaggcatcacagattaggcagagggcaattgaaagagttactaatgttgttggaacatacaatgacctaaggcttaggatattctcaaagcaccctgatttatttccggaagaggtattcaacatagaaaccttcaaatggtcatttggaattcttttctcacgcttggttcgattaccctcaatggatgggaaggttgccttggttccttgggcagatatgctgaatcatagttgtgaggtggatacgtttttggattatgataaatcatcccagggagttgtttttacaacagataggccatatcagccaggtgagcaggtctttatttcctatgggaagaagtccaatggagagctgttgctatcatatgggtttgtcccaagcaagggcaccaaccctagtgattccgttgagttgtcagtttcacttccaaaatctgacaaatgttataaggagaagttggaagctctgagaaagtatggactatcagctacagagtgttttcctgtacgaattactggctggccatcggagctaatggcatttgcttatttagctgtcagccctccaagtatgaacaaacaatttgaagagatggctgccgcagcatcgaacaaatctaccaccaggaaggatttaagatatcctgaaatagaagaagaagtactacagttcatattggatagttgtgaagttagcatatcaaagtataacaaattcttacaggcaagtggttcaatggatttggacgtgacatctccaaagcagctaaaccgaaggttgtttctgaaacagctagcggtggacttgtctactagtgagcagagaatcctattccgtgctcaatatatactgagaaggcaactgagggatatacgaaagggtgaactgagagctctgacgatcttcaatgggttcaggaagttttttaagtga
Functional Annotation

Protein Analysis

581

Amino Acids

66.3

Weight (kDa)

9.32

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
Acc36I ACCTGC 1 cut(s) 1117
AccB1I GGYRCC 1 cut(s) 1199
AccI GTMKAC 1 cut(s) 1622
AccII CGCG 2 cut(s) 625, 786
AccIII TCCGGA 1 cut(s) 913
AciI CCGC 2 cut(s) 1413, 1610
AclWI GGATC 2 cut(s) 31, 157
AcoI YGGCCR 3 cut(s) 419, 671, 1334
AcsI RAATTY 4 cut(s) 403, 655, 957, 1526
AcuI CTGAAG 2 cut(s) 27, 186
AfaI GTAC 4 cut(s) 411, 663, 1320, 1476
AfiI CCNNNNNNNGG 4 cut(s) 753, 945, 1195, 1196
AhlI ACTAGT 1 cut(s) 1625
AjiI CACGTC 1 cut(s) 1561
AjnI CCWGG 3 cut(s) 1080, 1117, 1436
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
Alw21I GWGCWC 3 cut(s) 119, 1654, 1708
AlwI GGATC 2 cut(s) 31, 157
Aor13HI TCCGGA 1 cut(s) 913
AoxI GGCC 7 cut(s) 153, 232, 283, 419, 671, 1106, 1334
ApeKI GCWGC 8 cut(s) 30, 322, 472, 557, 757, 1409, 1415, 1576
ApoI RAATTY 4 cut(s) 403, 655, 957, 1526
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 1133, 1706
AsuNHI GCTAGC 1 cut(s) 1606
AxyI CCTNAGG 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 1202
BalI TGGCCA 3 cut(s) 421, 673, 1336
BanI GGYRCC 1 cut(s) 1199
BanII GRGCYC 1 cut(s) 1708
BarI GAAGNNNNNNTAC 4 cut(s) 1458, 1461, 1490, 1493
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 3 cut(s) 119, 1654, 1708
BbvI GCAGC 8 cut(s) 42, 309, 459, 544, 769, 1396, 1427, 1588
BccI CCATC 4 cut(s) 720, 989, 1345, 1399
BciT130I CCWGG 3 cut(s) 1082, 1119, 1438
BciVI GTATCC 1 cut(s) 1045
BcuI ACTAGT 1 cut(s) 1625
BfaI CTAG 5 cut(s) 428, 680, 1209, 1607, 1626
BfmI CTRYAG 6 cut(s) 209, 354, 504, 589, 1302, 1478
BfuAI ACCTGC 1 cut(s) 1117
BfuI GTATCC 1 cut(s) 1045
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 9 cut(s) 31, 323, 473, 558, 758, 1410, 1413, 1416, 1577
BlsI GCNGC 9 cut(s) 32, 324, 474, 559, 759, 1411, 1414, 1417, 1578
BmcAI AGTACT 1 cut(s) 1476
Bme1390I CCNGG 3 cut(s) 1082, 1119, 1438
BmgBI CACGTC 1 cut(s) 1561
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 1014, 1201
BmrFI CCNGG 3 cut(s) 1082, 1119, 1438
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 821, 1427
BmtI GCTAGC 1 cut(s) 1610
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 881
Bsa29I ATCGAT 1 cut(s) 799
BsaJI CCNNGG 7 cut(s) 167, 189, 752, 1008, 1016, 1080, 1081
BsaWI WCCGGW 1 cut(s) 913
Bsc4I CCNNNNNNNGG 4 cut(s) 753, 945, 1195, 1196
Bse1I ACTGG 4 cut(s) 42, 422, 674, 1333
Bse21I CCTNAGG 1 cut(s) 875
BseAI TCCGGA 1 cut(s) 913
BseBI CCWGG 3 cut(s) 1082, 1119, 1438
BseCI ATCGAT 1 cut(s) 799
BseDI CCNNGG 7 cut(s) 167, 189, 752, 1008, 1016, 1080, 1081
BseGI GGATG 2 cut(s) 1000, 1076
BseLI CCNNNNNNNGG 4 cut(s) 753, 945, 1195, 1196
BseMII CTCAG 5 cut(s) 257, 1271, 1655, 1667, 1691
BseNI ACTGG 4 cut(s) 42, 422, 674, 1333
BseSI GKGCMC 1 cut(s) 1202
BseXI GCAGC 8 cut(s) 42, 309, 459, 544, 769, 1396, 1427, 1588
Bsh1236I CGCG 2 cut(s) 625, 786
BshFI GGCC 7 cut(s) 155, 234, 285, 421, 673, 1108, 1336
BshNI GGYRCC 1 cut(s) 1199
BshVI ATCGAT 1 cut(s) 799
BsiHKAI GWGCWC 3 cut(s) 119, 1654, 1708
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 4 cut(s) 753, 945, 1195, 1196
BsmFI GGGAC 1 cut(s) 1172
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 7 cut(s) 155, 234, 285, 421, 673, 1108, 1336
Bsp1286I GDGCHC 4 cut(s) 119, 1202, 1654, 1708
Bsp13I TCCGGA 1 cut(s) 913
Bsp143I GATC 4 cut(s) 36, 162, 796, 1713
Bsp68I TCGCGA 1 cut(s) 786
BspACI CCGC 2 cut(s) 1413, 1610
BspANI GGCC 7 cut(s) 155, 234, 285, 421, 673, 1108, 1336
BspCNI CTCAG 5 cut(s) 256, 1272, 1656, 1668, 1692
BspDI ATCGAT 1 cut(s) 799
BspEI TCCGGA 1 cut(s) 913
BspFNI CGCG 2 cut(s) 625, 786
BspLI GGNNCC 2 cut(s) 1014, 1201
BspMAI CTGCAG 4 cut(s) 213, 358, 508, 593
BspMI ACCTGC 1 cut(s) 1117
BspOI GCTAGC 1 cut(s) 1610
BspPI GGATC 2 cut(s) 31, 157
BspQI GCTCTTC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 1199
BsrI ACTGG 4 cut(s) 42, 422, 674, 1333
BssECI CCNNGG 7 cut(s) 167, 189, 752, 1008, 1016, 1080, 1081
BssMI GATC 4 cut(s) 36, 162, 796, 1713
BssT1I CCWWGG 5 cut(s) 167, 189, 752, 1008, 1016
Bst2UI CCWGG 3 cut(s) 1082, 1119, 1438
Bst4CI ACNGT 1 cut(s) 1482
Bst6I CTCTTC 4 cut(s) 542, 783, 912, 1395
BstC8I GCNNGC 2 cut(s) 1334, 1608
BstDEI CTNAG 7 cut(s) 243, 875, 881, 1280, 1664, 1676, 1700
BstENI CCTNNNNNAGG 1 cut(s) 751
BstF5I GGATG 2 cut(s) 1000, 1076
BstFNI CGCG 2 cut(s) 625, 786
BstKTI GATC 4 cut(s) 39, 165, 799, 1716
BstMBI GATC 4 cut(s) 36, 162, 796, 1713
BstNI CCWGG 3 cut(s) 1082, 1119, 1438
BstSCI CCNGG 3 cut(s) 1080, 1117, 1436
BstSFI CTRYAG 6 cut(s) 209, 354, 504, 589, 1302, 1478
BstSLI GKGCMC 1 cut(s) 1202
BstUI CGCG 2 cut(s) 625, 786
BstV1I GCAGC 8 cut(s) 42, 309, 459, 544, 769, 1396, 1427, 1588
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 799
Bsu36I CCTNAGG 1 cut(s) 875
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 7 cut(s) 155, 234, 285, 421, 673, 1108, 1336
BsuTUI ATCGAT 1 cut(s) 799
BtrI CACGTC 1 cut(s) 1561
BtsCI GGATG 2 cut(s) 1000, 1076
BtsI GCAGTG 3 cut(s) 351, 501, 586
BtsIMutI CAGTG 4 cut(s) 119, 351, 501, 586
BtuMI TCGCGA 1 cut(s) 786
BveI ACCTGC 1 cut(s) 1117
Cac8I GCNNGC 2 cut(s) 1334, 1608
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 799
Csp6I GTAC 4 cut(s) 410, 662, 1319, 1475
CviQI GTAC 4 cut(s) 410, 662, 1319, 1475
DdeI CTNAG 7 cut(s) 243, 875, 881, 1280, 1664, 1676, 1700
DpnI GATC 4 cut(s) 38, 164, 798, 1715
DpnII GATC 4 cut(s) 36, 162, 796, 1713
EaeI YGGCCR 3 cut(s) 419, 671, 1334
Eam1104I CTCTTC 4 cut(s) 542, 783, 912, 1395
EarI CTCTTC 4 cut(s) 542, 783, 912, 1395
Ecl136II GAGCTC 1 cut(s) 1706
Eco130I CCWWGG 5 cut(s) 167, 189, 752, 1008, 1016
Eco147I AGGCCT 2 cut(s) 234, 285
Eco24I GRGCYC 1 cut(s) 1708
Eco32I GATATC 1 cut(s) 1454
Eco53kI GAGCTC 1 cut(s) 1706
Eco57I CTGAAG 2 cut(s) 27, 186
Eco81I CCTNAGG 1 cut(s) 875
EcoICRI GAGCTC 1 cut(s) 1706
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 3 cut(s) 1080, 1117, 1436
EcoRV GATATC 1 cut(s) 1454
EcoT14I CCWWGG 5 cut(s) 167, 189, 752, 1008, 1016
EcoT38I GRGCYC 1 cut(s) 1708
ErhI CCWWGG 5 cut(s) 167, 189, 752, 1008, 1016
FalI AAGNNNNNCTT 4 cut(s) 745, 777, 992, 1024
FaqI GGGAC 1 cut(s) 1172
FauNDI CATATG 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 1622
Fnu4HI GCNGC 9 cut(s) 31, 323, 473, 558, 758, 1410, 1413, 1416, 1577
FokI GGATG 2 cut(s) 1007, 1063
FriOI GRGCYC 1 cut(s) 1708
Fsp4HI GCNGC 9 cut(s) 31, 323, 473, 558, 758, 1410, 1413, 1416, 1577
FspBI CTAG 5 cut(s) 428, 680, 1209, 1607, 1626
GluI GCNGC 9 cut(s) 31, 323, 473, 558, 758, 1410, 1413, 1416, 1577
HaeIII GGCC 7 cut(s) 155, 234, 285, 421, 673, 1108, 1336
HapII CCGG 1 cut(s) 914
HpaII CCGG 1 cut(s) 914
HphI GGTGA 2 cut(s) 1133, 1706
Hpy166II GTNNAC 3 cut(s) 1615, 1623, 1697
Hpy188III TCNNGA 6 cut(s) 15, 723, 785, 914, 1457, 1729
Hpy8I GTNNAC 3 cut(s) 1615, 1623, 1697
HpyAV CCTTC 6 cut(s) 457, 949, 994, 1435, 1581, 1662
HpyCH4III ACNGT 1 cut(s) 1482
HpyCH4IV ACGT 2 cut(s) 1055, 1560
HpyCH4V TGCA 5 cut(s) 25, 211, 356, 506, 591
HpyF3I CTNAG 7 cut(s) 243, 875, 881, 1280, 1664, 1676, 1700
HpySE526I ACGT 2 cut(s) 1055, 1560
Kpn2I TCCGGA 1 cut(s) 913
Kzo9I GATC 4 cut(s) 36, 162, 796, 1713
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 1 cut(s) 1342
Lsp1109I GCAGC 8 cut(s) 42, 309, 459, 544, 769, 1396, 1427, 1588
LweI GCATC 2 cut(s) 821, 1427
MaeI CTAG 5 cut(s) 428, 680, 1209, 1607, 1626
MaeII ACGT 2 cut(s) 1055, 1560
MaeIII GTNAC 6 cut(s) 78, 176, 455, 707, 844, 1561
MalI GATC 4 cut(s) 38, 164, 798, 1715
MboI GATC 4 cut(s) 36, 162, 796, 1713
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 4 cut(s) 119, 1202, 1654, 1708
MlsI TGGCCA 3 cut(s) 421, 673, 1336
MluCI AATT 8 cut(s) 108, 403, 655, 834, 957, 1323, 1394, 1526
MluNI TGGCCA 3 cut(s) 421, 673, 1336
MlyI GAGTC 4 cut(s) 353, 503, 588, 775
MmeI TCCRAC 2 cut(s) 838, 1251
Mox20I TGGCCA 3 cut(s) 421, 673, 1336
MroI TCCGGA 1 cut(s) 913
MscI TGGCCA 3 cut(s) 421, 673, 1336
MseI TTAA 2 cut(s) 1448, 1740
MslI CAYNNNNRTG 1 cut(s) 1041
Msp20I TGGCCA 3 cut(s) 421, 673, 1336
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 3 cut(s) 1082, 1119, 1438
MunI CAATTG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 255
MvaI CCWGG 3 cut(s) 1082, 1119, 1438
MvnI CGCG 2 cut(s) 625, 786
NdeI CATATG 1 cut(s) 1177
NdeII GATC 4 cut(s) 36, 162, 796, 1713
NheI GCTAGC 1 cut(s) 1606
NlaIV GGNNCC 2 cut(s) 1014, 1201
NmuCI GTSAC 3 cut(s) 78, 176, 1561
NruI TCGCGA 1 cut(s) 786
PasI CCCWGGG 1 cut(s) 1081
PceI AGGCCT 2 cut(s) 234, 285
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 6 cut(s) 18, 185, 227, 1033, 1214, 1638
PkrI GCNGC 9 cut(s) 32, 324, 474, 559, 759, 1411, 1414, 1417, 1578
PleI GAGTC 4 cut(s) 353, 503, 588, 775
PpsI GAGTC 4 cut(s) 353, 503, 588, 775
PsiI TTATAA 1 cut(s) 1260
Psp124BI GAGCTC 1 cut(s) 1708
Psp6I CCWGG 3 cut(s) 1080, 1117, 1436
PspGI CCWGG 3 cut(s) 1080, 1117, 1436
PspN4I GGNNCC 2 cut(s) 1014, 1201
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 4 cut(s) 213, 358, 508, 593
PsuI RGATCY 1 cut(s) 162
RruI TCGCGA 1 cut(s) 786
RsaI GTAC 4 cut(s) 411, 663, 1320, 1476
RsaNI GTAC 4 cut(s) 410, 662, 1319, 1475
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 1 cut(s) 1708
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 2 cut(s) 1448, 1740
SatI GCNGC 9 cut(s) 31, 323, 473, 558, 758, 1410, 1413, 1416, 1577
Sau3AI GATC 4 cut(s) 36, 162, 796, 1713
Sau96I GGNCC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 1476
SchI GAGTC 4 cut(s) 353, 503, 588, 775
ScrFI CCNGG 3 cut(s) 1082, 1119, 1438
SduI GDGCHC 4 cut(s) 119, 1202, 1654, 1708
SfaNI GCATC 2 cut(s) 821, 1427
SfcI CTRYAG 6 cut(s) 209, 354, 504, 589, 1302, 1478
SmiMI CAYNNNNRTG 1 cut(s) 1041
SpeI ACTAGT 1 cut(s) 1625
Sse9I AATT 8 cut(s) 108, 403, 655, 834, 957, 1323, 1394, 1526
SseBI AGGCCT 2 cut(s) 234, 285
SsiI CCGC 2 cut(s) 1413, 1610
SspMI CTAG 5 cut(s) 428, 680, 1209, 1607, 1626
SstI GAGCTC 1 cut(s) 1708
StuI AGGCCT 2 cut(s) 234, 285
StyD4I CCNGG 3 cut(s) 1080, 1117, 1436
StyI CCWWGG 5 cut(s) 167, 189, 752, 1008, 1016
TaaI ACNGT 1 cut(s) 1482
TaiI ACGT 2 cut(s) 1058, 1563
TaqI TCGA 4 cut(s) 722, 799, 979, 1421
TasI AATT 8 cut(s) 108, 403, 655, 834, 957, 1323, 1394, 1526
TatI WGTACW 1 cut(s) 1474
TauI GCSGC 1 cut(s) 1415
TfiI GAWTC 6 cut(s) 18, 185, 227, 1033, 1214, 1638
Tru1I TTAA 2 cut(s) 1448, 1740
Tru9I TTAA 2 cut(s) 1448, 1740
TscAI CASTG 4 cut(s) 119, 358, 508, 593
TseFI GTSAC 3 cut(s) 78, 176, 1561
TseI GCWGC 8 cut(s) 30, 322, 472, 557, 757, 1409, 1415, 1576
Tsp45I GTSAC 3 cut(s) 78, 176, 1561
TspDTI ATGAA 5 cut(s) 337, 487, 572, 1400, 1474
TspGWI ACGGA 4 cut(s) 327, 562, 1207, 1637
TspRI CASTG 4 cut(s) 119, 358, 508, 593
XagI CCTNNNNNAGG 1 cut(s) 751
XapI RAATTY 4 cut(s) 403, 655, 957, 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 1622
XspI CTAG 5 cut(s) 428, 680, 1209, 1607, 1626
ZrmI AGTACT 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.