Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007267

Physical Location & Seq

Genomic Coordinates Forward (+)

2526513 .. 2528639

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTTCCTCCCATAATTTATAAGTATAAGCGAAGGAAAGATCGGCGACTTGGTAGGGACGATGATAGTTCAGTGATGATGACTCGTCGGAGACCCGACTCCGATTTTATCGAGGTAAGTGATGAGAATCGCTCGTTTGCTTTATTTAAGGAGGATGATGAAAAAAATCGTGATTTGGGTTTAGTTGATGATGGTTCCACAAATTTGGTTCTTCAATGTCATGATGATGGTTGTTCCCTAGAGAAGGATAATAGCAATAGCTTGGATGATTTGTTCTCTGGGTTTGTTTATAAAGGTGTGAGGAGGAGGAAAAGGGATGACTTTGGAAGTATAACAACGAGTAATCTTGTTTCTCCTCAAATTGCTGATGATGATGATGATAGTGTTTCTGATTCACATATTGAAAGGCAAGAATGCAGTGAATTTCATGTTGAAGTAAGAAGAGTTTCTCCATACTTTCAGGGATCTACTGTTTCACAACAGTCCAAAGAAGGGTGTGATTCTGATAGTGTTTGTTCCAAAGAAGGATGCAGCAAAGTTCAAGCTAAAGTCCCACGAGTTTCTCCATACTTCCAGGCATCAACTATTTCACAGTGTGATTCTGACATTGTTTCTTCTTCTCAAAGTGGAAGAAATTATCGGAAAGGAAGCAGCAAACGTCAAGTTAAAGTCAGAAGAGTTTCGCCATATTTCCAGGAATCAACTGTTTCAGAACAGCCAAACCAAGCTCCTAAAGGTTTGCGTAACTATTTTAAGGTTGTGAAAGTTTCAAGATATTTCCATGCTGATGGAATCCAAGTCAATGAATCACAAAAGGAGAAATCAAGAAATGTGAGGAAAACTCCTATTGTGAGCCCTGTACTCTCGCTTTCTCAAAAGACCGATGATGTATACCTGCGAAAAACGCCGGATAACACATGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTGGCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGACGCGGGGAGTGATATCAGACTTGTTTGGATTGTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0008150 GO:0009314 GO:0009628 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

352

Amino Acids

40.26

Weight (kDa)

8.0

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07930 AT3G07930 AT3G07930 AT3G07930
fragaria_vesca	FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870
malus_domestica	MD00G1164900.v1.1
prunus_persica	Prupe.4G286600_v2.0.a1
pyrus_communis	pycom520g01030 pycom520g01040
rosa_chinensis	RchiOBHm_Chr3g0497491
rosa_laevigata	RLG00000022456
rosa_multiflora	Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013
rosa_roxburghii	Rroxscaffold_6G00387970
rosa_rugosa	Rorug03G0293200 Rorug03G0293300
rosa_samantha	Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900
rosa_wichuraiana	Rw0G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	21, 291
Acc36I	ACCTGC	1 cut(s)	903
AccB1I	GGYRCC	1 cut(s)	922
AccI	GTMKAC	1 cut(s)	891
AccII	CGCG	1 cut(s)	1022
AciI	CCGC	2 cut(s)	979, 1022
AclWI	GGATC	2 cut(s)	472, 965
AcsI	RAATTY	2 cut(s)	202, 422
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	861, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	244, 492
AgsI	TTSAA	6 cut(s)	215, 404, 434, 542, 771, 953
AjnI	CCWGG	2 cut(s)	573, 693
AleI	CACNNNNGTG	1 cut(s)	920
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	3 cut(s)	261, 545, 728
AluI	AGCT	3 cut(s)	261, 545, 728
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	2 cut(s)	472, 965
ApeKI	GCWGC	2 cut(s)	531, 651
ApoI	RAATTY	2 cut(s)	202, 422
Asp700I	GAANNNNTTC	2 cut(s)	445, 679
BanI	GGYRCC	1 cut(s)	922
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	543, 663
BccI	CCATC	3 cut(s)	185, 221, 782
BciT130I	CCWGG	2 cut(s)	575, 695
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	903
BisI	GCNGC	2 cut(s)	532, 652
BlsI	GCNGC	2 cut(s)	533, 653
Bme1390I	CCNGG	2 cut(s)	575, 695
BmiI	GGNNCC	3 cut(s)	6, 196, 924
BmrFI	CCNGG	2 cut(s)	575, 695
BmsI	GCATC	2 cut(s)	518, 587
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 826, 858
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	974
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 492
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	575, 695
BseDI	CCNNGG	1 cut(s)	974
BseGI	GGATG	4 cut(s)	160, 271, 322, 533
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	244, 492
BseRI	GAGGAG	3 cut(s)	316, 319, 345
BseXI	GCAGC	2 cut(s)	543, 663
Bsh1236I	CGCG	1 cut(s)	1022
BshNI	GGYRCC	1 cut(s)	922
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	2 cut(s)	71, 536
BslI	CCNNNNNNNGG	2 cut(s)	244, 492
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	71, 536
BsmI	GAATGC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	5 cut(s)	40, 464, 932, 958, 970
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	2 cut(s)	979, 1022
BspFNI	CGCG	1 cut(s)	1022
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	6, 196, 924
BspMI	ACCTGC	1 cut(s)	903
BspPI	GGATC	2 cut(s)	472, 965
BspT107I	GGYRCC	1 cut(s)	922
BspTNI	GGTCTC	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	974
BssMI	GATC	5 cut(s)	40, 464, 932, 958, 970
BssNAI	GTATAC	1 cut(s)	892
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	974
Bst1107I	GTATAC	1 cut(s)	892
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	575, 695
Bst4CI	ACNGT	4 cut(s)	472, 483, 594, 706
Bst6I	CTCTTC	2 cut(s)	436, 670
BstDSI	CCRYGG	1 cut(s)	974
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	4 cut(s)	160, 271, 322, 533
BstFNI	CGCG	1 cut(s)	1022
BstKTI	GATC	5 cut(s)	43, 467, 935, 961, 973
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	5 cut(s)	40, 464, 932, 958, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	904
BstNI	CCWGG	2 cut(s)	575, 695
BstSCI	CCNGG	2 cut(s)	573, 693
BstUI	CGCG	1 cut(s)	1022
BstV1I	GCAGC	2 cut(s)	543, 663
BstX2I	RGATCY	1 cut(s)	464
BstXI	CCANNNNNNTGG	2 cut(s)	205, 788
BstYI	RGATCY	1 cut(s)	464
BstZ17I	GTATAC	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	974
BtsCI	GGATG	4 cut(s)	160, 271, 322, 533
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	3 cut(s)	78, 424, 599
BveI	ACCTGC	1 cut(s)	903
CciI	TCATGA	1 cut(s)	220
CseI	GACGC	1 cut(s)	1028
Csp6I	GTAC	2 cut(s)	860, 1054
CviAII	CATG	7 cut(s)	221, 428, 782, 918, 939, 968, 975
CviJI	RGCY	5 cut(s)	261, 545, 718, 728, 855
CviKI_1	RGCY	5 cut(s)	261, 545, 718, 728, 855
CviQI	GTAC	2 cut(s)	860, 1054
DpnI	GATC	5 cut(s)	42, 466, 934, 960, 972
DpnII	GATC	5 cut(s)	40, 464, 932, 958, 970
DraIII	CACNNNGTG	1 cut(s)	596
Eam1104I	CTCTTC	2 cut(s)	436, 670
EarI	CTCTTC	2 cut(s)	436, 670
Eco130I	CCWWGG	1 cut(s)	974
Eco24I	GRGCYC	1 cut(s)	857
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	1033
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	573, 693
EcoRV	GATATC	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	974
EcoT38I	GRGCYC	1 cut(s)	857
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	7 cut(s)	224, 431, 785, 921, 942, 971, 978
FaqI	GGGAC	2 cut(s)	71, 536
FatI	CATG	7 cut(s)	220, 427, 781, 917, 938, 967, 974
FauI	CCCGC	2 cut(s)	972, 1015
FauNDI	CATATG	1 cut(s)	992
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	2 cut(s)	532, 652
FokI	GGATG	4 cut(s)	167, 278, 329, 540
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	2 cut(s)	532, 652
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	2 cut(s)	532, 652
HapII	CCGG	1 cut(s)	908
HgaI	GACGC	1 cut(s)	1028
Hin1II	CATG	7 cut(s)	224, 431, 785, 921, 942, 971, 978
HinfI	GANTC	9 cut(s)	82, 98, 127, 392, 500, 599, 698, 792, 806
HpaII	CCGG	1 cut(s)	908
Hpy166II	GTNNAC	2 cut(s)	892, 1054
Hpy188III	TCNNGA	5 cut(s)	170, 221, 771, 825, 953
Hpy8I	GTNNAC	2 cut(s)	892, 1054
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	27, 238, 485, 518
HpyCH4III	ACNGT	4 cut(s)	472, 483, 594, 706
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	2 cut(s)	417, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	904
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	7 cut(s)	224, 431, 785, 921, 942, 971, 978
Kzo9I	GATC	5 cut(s)	40, 464, 932, 958, 970
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	2 cut(s)	543, 663
LweI	GCATC	2 cut(s)	518, 587
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	5 cut(s)	42, 466, 934, 960, 972
MboI	GATC	5 cut(s)	40, 464, 932, 958, 970
MboII	GAAGA	7 cut(s)	203, 453, 606, 609, 642, 687, 968
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	5 cut(s)	15, 202, 360, 422, 634
MlyI	GAGTC	2 cut(s)	76, 92
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	9 cut(s)	18, 106, 145, 294, 297, 300, 366, 828, 936
MroXI	GAANNNNTTC	2 cut(s)	445, 679
MseI	TTAA	3 cut(s)	147, 666, 753
MslI	CAYNNNNRTG	5 cut(s)	225, 786, 920, 966, 995
MspI	CCGG	1 cut(s)	908
MspR9I	CCNGG	2 cut(s)	575, 695
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	2 cut(s)	575, 695
MvnI	CGCG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	1 cut(s)	904
NcoI	CCATGG	1 cut(s)	974
NdeI	CATATG	1 cut(s)	992
NdeII	GATC	5 cut(s)	40, 464, 932, 958, 970
NlaIII	CATG	7 cut(s)	224, 431, 785, 921, 942, 971, 978
NlaIV	GGNNCC	3 cut(s)	6, 196, 924
OliI	CACNNNNGTG	1 cut(s)	920
PagI	TCATGA	1 cut(s)	220
PctI	GAATGC	1 cut(s)	419
PdmI	GAANNNNTTC	2 cut(s)	445, 679
PfeI	GAWTC	7 cut(s)	127, 392, 500, 599, 698, 792, 806
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	2 cut(s)	533, 653
PleI	GAGTC	2 cut(s)	76, 92
PpsI	GAGTC	2 cut(s)	76, 92
PsiI	TTATAA	2 cut(s)	21, 291
Psp6I	CCWGG	2 cut(s)	573, 693
PspGI	CCWGG	2 cut(s)	573, 693
PspN4I	GGNNCC	3 cut(s)	6, 196, 924
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	2 cut(s)	861, 1055
RsaNI	GTAC	2 cut(s)	860, 1054
RseI	CAYNNNNRTG	5 cut(s)	225, 786, 920, 966, 995
SaqAI	TTAA	3 cut(s)	147, 666, 753
SatI	GCNGC	2 cut(s)	532, 652
Sau3AI	GATC	5 cut(s)	40, 464, 932, 958, 970
SchI	GAGTC	2 cut(s)	76, 92
ScrFI	CCNGG	2 cut(s)	575, 695
SduI	GDGCHC	1 cut(s)	857
SetI	ASST	9 cut(s)	117, 263, 298, 547, 661, 730, 739, 759, 897
SfaNI	GCATC	2 cut(s)	518, 587
SmiMI	CAYNNNNRTG	5 cut(s)	225, 786, 920, 966, 995
Sse9I	AATT	5 cut(s)	15, 202, 360, 422, 634
SsiI	CCGC	2 cut(s)	979, 1022
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	573, 693
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	4 cut(s)	472, 483, 594, 706
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	896
TasI	AATT	5 cut(s)	15, 202, 360, 422, 634
TatI	WGTACW	2 cut(s)	859, 1053
TfiI	GAWTC	7 cut(s)	127, 392, 500, 599, 698, 792, 806
Tru1I	TTAA	3 cut(s)	147, 666, 753
Tru9I	TTAA	3 cut(s)	147, 666, 753
TscAI	CASTG	3 cut(s)	78, 424, 599
TseI	GCWGC	2 cut(s)	531, 651
TspDTI	ATGAA	3 cut(s)	174, 416, 819
TspRI	CASTG	3 cut(s)	78, 424, 599
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	202, 422
XmiI	GTMKAC	1 cut(s)	891
XmnI	GAANNNNTTC	2 cut(s)	445, 679
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.