HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07930 AT3G07930 AT3G07930 AT3G07930 |
| fragaria_vesca | FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 |
| malus_domestica | MD00G1164900.v1.1 |
| prunus_persica | Prupe.4G286600_v2.0.a1 |
| pyrus_communis | pycom520g01030 pycom520g01040 |
| rosa_chinensis | RchiOBHm_Chr3g0497491 |
| rosa_laevigata | RLG00000022456 |
| rosa_multiflora | Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00387970 |
| rosa_rugosa | Rorug03G0293200 Rorug03G0293300 |
| rosa_samantha | Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900 |
| rosa_wichuraiana | Rw0G018500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2102 |
| AarI | CACCTGC | 2 cut(s) | 1031, 1520 |
| Acc36I | ACCTGC | 3 cut(s) | 1031, 1045, 1520 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 481, 1606, 1801 |
| AccBSI | CCGCTC | 1 cut(s) | 292 |
| AccI | GTMKAC | 1 cut(s) | 2116 |
| AccII | CGCG | 1 cut(s) | 282 |
| AccIII | TCCGGA | 1 cut(s) | 1003 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 2 cut(s) | 1952, 1953 |
| AcoI | YGGCCR | 2 cut(s) | 472, 1792 |
| AcsI | RAATTY | 2 cut(s) | 859, 2297 |
| AcvI | CACGTG | 1 cut(s) | 1613 |
| AdeI | CACNNNGTG | 1 cut(s) | 2046 |
| AfaI | GTAC | 2 cut(s) | 1030, 1248 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 481, 1204, 1581, 1606, 1801, 2250 |
| AflIII | ACRYGT | 2 cut(s) | 280, 1612 |
| AgsI | TTSAA | 7 cut(s) | 185, 815, 865, 1234, 1432, 1525, 1719 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 266 |
| AjnI | CCWGG | 2 cut(s) | 1472, 1961 |
| AluBI | AGCT | 6 cut(s) | 581, 806, 1697, 2175, 2181, 2219 |
| AluI | AGCT | 6 cut(s) | 581, 806, 1697, 2175, 2181, 2219 |
| Alw26I | GTCTC | 3 cut(s) | 1750, 1937, 2157 |
| AlwI | GGATC | 2 cut(s) | 1952, 1953 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1037 |
| Ama87I | CYCGRG | 2 cut(s) | 959, 971 |
| Aor13HI | TCCGGA | 1 cut(s) | 1003 |
| AoxI | GGCC | 4 cut(s) | 408, 472, 666, 1792 |
| ApeKI | GCWGC | 5 cut(s) | 82, 2063, 2075, 2132, 2216 |
| ApoI | RAATTY | 2 cut(s) | 859, 2297 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1011, 1567, 1630 |
| AspS9I | GGNCC | 1 cut(s) | 176 |
| AsuHPI | GGTGA | 4 cut(s) | 480, 839, 1589, 1987 |
| AsuNHI | GCTAGC | 1 cut(s) | 1277 |
| AvaI | CYCGRG | 2 cut(s) | 959, 971 |
| AvaII | GGWCC | 1 cut(s) | 176 |
| BaeGI | GKGCMC | 1 cut(s) | 1322 |
| BalI | TGGCCA | 2 cut(s) | 474, 1794 |
| BanII | GRGCYC | 2 cut(s) | 960, 966 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1432, 1464 |
| BbrPI | CACGTG | 1 cut(s) | 1613 |
| BbsI | GAAGAC | 1 cut(s) | 265 |
| BbvCI | CCTCAGC | 2 cut(s) | 87, 93 |
| BbvI | GCAGC | 5 cut(s) | 94, 2050, 2062, 2144, 2228 |
| BccI | CCATC | 6 cut(s) | 332, 464, 509, 755, 1309, 1784 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 395, 429 |
| BciT130I | CCWGG | 2 cut(s) | 1474, 1963 |
| BciVI | GTATCC | 1 cut(s) | 1087 |
| BcoDI | GTCTC | 3 cut(s) | 1750, 1937, 2157 |
| BfaI | CTAG | 1 cut(s) | 1278 |
| BfmI | CTRYAG | 3 cut(s) | 1038, 1513, 2268 |
| BfuAI | ACCTGC | 3 cut(s) | 1031, 1045, 1520 |
| BfuI | GTATCC | 1 cut(s) | 1087 |
| BglII | AGATCT | 2 cut(s) | 1826, 2032 |
| BisI | GCNGC | 6 cut(s) | 83, 293, 2064, 2076, 2133, 2217 |
| BlpI | GCTNAGC | 1 cut(s) | 1698 |
| BlsI | GCNGC | 6 cut(s) | 84, 294, 2065, 2077, 2134, 2218 |
| Bme1390I | CCNGG | 2 cut(s) | 1474, 1963 |
| Bme18I | GGWCC | 1 cut(s) | 176 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 266 |
| BmeT110I | CYCGRG | 2 cut(s) | 959, 971 |
| BmgT120I | GGNCC | 1 cut(s) | 176 |
| BmiI | GGNNCC | 1 cut(s) | 957 |
| BmrFI | CCNGG | 2 cut(s) | 1474, 1963 |
| BmrI | ACTGGG | 1 cut(s) | 2302 |
| BmsI | GCATC | 1 cut(s) | 2212 |
| BmtI | GCTAGC | 1 cut(s) | 1281 |
| BmuI | ACTGGG | 1 cut(s) | 2302 |
| BpiI | GAAGAC | 1 cut(s) | 265 |
| BpmI | CTGGAG | 5 cut(s) | 974, 1878, 1984, 2197, 2304 |
| Bpu10I | CCTNAGC | 3 cut(s) | 87, 93, 123 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1698 |
| BpuEI | CTTGAG | 2 cut(s) | 683, 1259 |
| BsaAI | YACGTR | 1 cut(s) | 1613 |
| BsaI | GGTCTC | 2 cut(s) | 1750, 1937 |
| BsaJI | CCNNGG | 2 cut(s) | 972, 1961 |
| BsaWI | WCCGGW | 4 cut(s) | 170, 1003, 1079, 2243 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 318, 348 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 481, 1204, 1581, 1606, 1801, 2250 |
| Bse1I | ACTGG | 2 cut(s) | 2297, 2321 |
| Bse3DI | GCAATG | 1 cut(s) | 655 |
| BseAI | TCCGGA | 1 cut(s) | 1003 |
| BseBI | CCWGG | 2 cut(s) | 1474, 1963 |
| BseDI | CCNNGG | 2 cut(s) | 972, 1961 |
| BseGI | GGATG | 4 cut(s) | 934, 1063, 1249, 1795 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 481, 1204, 1581, 1606, 1801, 2250 |
| BseMI | GCAATG | 1 cut(s) | 655 |
| BseMII | CTCAG | 9 cut(s) | 101, 107, 831, 1176, 1476, 1935, 2061, 2168, 2181 |
| BseNI | ACTGG | 2 cut(s) | 2297, 2321 |
| BseSI | GKGCMC | 1 cut(s) | 1322 |
| BseXI | GCAGC | 5 cut(s) | 94, 2050, 2062, 2144, 2228 |
| BsgI | GTGCAG | 1 cut(s) | 1572 |
| Bsh1236I | CGCG | 1 cut(s) | 282 |
| BshFI | GGCC | 4 cut(s) | 410, 474, 668, 1794 |
| BsiHKCI | CYCGRG | 2 cut(s) | 959, 971 |
| BsiSI | CCGG | 5 cut(s) | 171, 1004, 1080, 1832, 2244 |
| BslFI | GGGAC | 1 cut(s) | 2034 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 481, 1204, 1581, 1606, 1801, 2250 |
| BsmAI | GTCTC | 3 cut(s) | 1750, 1937, 2157 |
| BsmFI | GGGAC | 1 cut(s) | 2034 |
| BsnI | GGCC | 4 cut(s) | 410, 474, 668, 1794 |
| Bso31I | GGTCTC | 2 cut(s) | 1750, 1937 |
| BsoBI | CYCGRG | 2 cut(s) | 959, 971 |
| Bsp1286I | GDGCHC | 3 cut(s) | 960, 966, 1322 |
| Bsp13I | TCCGGA | 1 cut(s) | 1003 |
| Bsp143I | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1698 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 4 cut(s) | 410, 474, 668, 1794 |
| BspCNI | CTCAG | 9 cut(s) | 100, 106, 832, 1177, 1477, 1934, 2062, 2167, 2182 |
| BspEI | TCCGGA | 1 cut(s) | 1003 |
| BspFNI | CGCG | 1 cut(s) | 282 |
| BspLI | GGNNCC | 1 cut(s) | 957 |
| BspMAI | CTGCAG | 2 cut(s) | 1042, 1517 |
| BspMI | ACCTGC | 3 cut(s) | 1031, 1045, 1520 |
| BspOI | GCTAGC | 1 cut(s) | 1281 |
| BspPI | GGATC | 2 cut(s) | 1952, 1953 |
| BspTNI | GGTCTC | 2 cut(s) | 1750, 1937 |
| BsrBI | CCGCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 655 |
| BsrI | ACTGG | 2 cut(s) | 2297, 2321 |
| BssECI | CCNNGG | 2 cut(s) | 972, 1961 |
| BssMI | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| Bst2UI | CCWGG | 2 cut(s) | 1474, 1963 |
| Bst4CI | ACNGT | 5 cut(s) | 794, 935, 1124, 1326, 1501 |
| Bst6I | CTCTTC | 8 cut(s) | 893, 1106, 1170, 1371, 1753, 2014, 2042, 2120 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1046, 1259, 2063, 2222 |
| BstBAI | YACGTR | 1 cut(s) | 1613 |
| BstC8I | GCNNGC | 5 cut(s) | 290, 1279, 1494, 1985, 2013 |
| BstF5I | GGATG | 4 cut(s) | 934, 1063, 1249, 1795 |
| BstFNI | CGCG | 1 cut(s) | 282 |
| BstKTI | GATC | 4 cut(s) | 1829, 1948, 1960, 2035 |
| BstMAI | GTCTC | 3 cut(s) | 1750, 1937, 2157 |
| BstMBI | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 88, 471, 1046, 1259, 1853, 2063, 2072, 2222 |
| BstNI | CCWGG | 2 cut(s) | 1474, 1963 |
| BstNSI | RCATGY | 3 cut(s) | 1496, 1987, 2281 |
| BstSCI | CCNGG | 2 cut(s) | 1472, 1961 |
| BstSFI | CTRYAG | 3 cut(s) | 1038, 1513, 2268 |
| BstSLI | GKGCMC | 1 cut(s) | 1322 |
| BstUI | CGCG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 5 cut(s) | 94, 2050, 2062, 2144, 2228 |
| BstV2I | GAAGAC | 1 cut(s) | 265 |
| BstX2I | RGATCY | 2 cut(s) | 1826, 2032 |
| BstYI | RGATCY | 2 cut(s) | 1826, 2032 |
| BsuI | GTATCC | 1 cut(s) | 1087 |
| BsuRI | GGCC | 4 cut(s) | 410, 474, 668, 1794 |
| BtgZI | GCGATG | 2 cut(s) | 480, 2150 |
| BtsCI | GGATG | 4 cut(s) | 934, 1063, 1249, 1795 |
| BtsIMutI | CAGTG | 1 cut(s) | 1497 |
| BveI | ACCTGC | 3 cut(s) | 1031, 1045, 1520 |
| Cac8I | GCNNGC | 5 cut(s) | 290, 1279, 1494, 1985, 2013 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1037 |
| Cfr13I | GGNCC | 1 cut(s) | 176 |
| Csp6I | GTAC | 2 cut(s) | 1029, 1247 |
| CviAII | CATG | 9 cut(s) | 203, 920, 1493, 1905, 1936, 1955, 1984, 2198, 2278 |
| CviQI | GTAC | 2 cut(s) | 1029, 1247 |
| DpnI | GATC | 4 cut(s) | 1828, 1947, 1959, 2034 |
| DpnII | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| DraIII | CACNNNGTG | 1 cut(s) | 2046 |
| DriI | GACNNNNNGTC | 1 cut(s) | 266 |
| EaeI | YGGCCR | 2 cut(s) | 472, 1792 |
| Eam1104I | CTCTTC | 8 cut(s) | 893, 1106, 1170, 1371, 1753, 2014, 2042, 2120 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 8 cut(s) | 893, 1106, 1170, 1371, 1753, 2014, 2042, 2120 |
| Eco24I | GRGCYC | 2 cut(s) | 960, 966 |
| Eco31I | GGTCTC | 2 cut(s) | 1750, 1937 |
| Eco47I | GGWCC | 1 cut(s) | 176 |
| Eco72I | CACGTG | 1 cut(s) | 1613 |
| Eco88I | CYCGRG | 2 cut(s) | 959, 971 |
| EcoRII | CCWGG | 2 cut(s) | 1472, 1961 |
| EcoT22I | ATGCAT | 2 cut(s) | 716, 2227 |
| EcoT38I | GRGCYC | 2 cut(s) | 960, 966 |
| FaeI | CATG | 9 cut(s) | 206, 923, 1496, 1908, 1939, 1958, 1987, 2201, 2281 |
| FaqI | GGGAC | 1 cut(s) | 2034 |
| FatI | CATG | 9 cut(s) | 202, 919, 1492, 1904, 1935, 1954, 1983, 2197, 2277 |
| FauNDI | CATATG | 1 cut(s) | 2227 |
| FblI | GTMKAC | 1 cut(s) | 2116 |
| Fnu4HI | GCNGC | 6 cut(s) | 83, 293, 2064, 2076, 2133, 2217 |
| FokI | GGATG | 4 cut(s) | 941, 1070, 1256, 1802 |
| FriOI | GRGCYC | 2 cut(s) | 960, 966 |
| Fsp4HI | GCNGC | 6 cut(s) | 83, 293, 2064, 2076, 2133, 2217 |
| FspBI | CTAG | 1 cut(s) | 1278 |
| GluI | GCNGC | 6 cut(s) | 83, 293, 2064, 2076, 2133, 2217 |
| GsuI | CTGGAG | 5 cut(s) | 974, 1878, 1984, 2197, 2304 |
| HaeIII | GGCC | 4 cut(s) | 410, 474, 668, 1794 |
| HapII | CCGG | 5 cut(s) | 171, 1004, 1080, 1832, 2244 |
| Hin1II | CATG | 9 cut(s) | 206, 923, 1496, 1908, 1939, 1958, 1987, 2201, 2281 |
| HinfI | GANTC | 6 cut(s) | 502, 748, 1192, 1540, 1766, 1909 |
| HpaII | CCGG | 5 cut(s) | 171, 1004, 1080, 1832, 2244 |
| HphI | GGTGA | 4 cut(s) | 480, 839, 1589, 1987 |
| Hpy166II | GTNNAC | 4 cut(s) | 176, 659, 1285, 2117 |
| Hpy188III | TCNNGA | 4 cut(s) | 953, 1004, 1895, 2156 |
| Hpy8I | GTNNAC | 4 cut(s) | 176, 659, 1285, 2117 |
| HpyAV | CCTTC | 5 cut(s) | 38, 374, 900, 1393, 1531 |
| HpyCH4III | ACNGT | 5 cut(s) | 794, 935, 1124, 1326, 1501 |
| HpyCH4IV | ACGT | 2 cut(s) | 870, 1612 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 88, 471, 1046, 1259, 1853, 2063, 2072, 2222 |
| HpySE526I | ACGT | 2 cut(s) | 870, 1612 |
| Hsp92II | CATG | 9 cut(s) | 206, 923, 1496, 1908, 1939, 1958, 1987, 2201, 2281 |
| Kpn2I | TCCGGA | 1 cut(s) | 1003 |
| Kzo9I | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| LmnI | GCTCC | 5 cut(s) | 11, 955, 1489, 1992, 2178 |
| Lsp1109I | GCAGC | 5 cut(s) | 94, 2050, 2062, 2144, 2228 |
| LweI | GCATC | 1 cut(s) | 2212 |
| MaeI | CTAG | 1 cut(s) | 1278 |
| MaeII | ACGT | 2 cut(s) | 870, 1612 |
| MaeIII | GTNAC | 3 cut(s) | 910, 1060, 2185 |
| MalI | GATC | 4 cut(s) | 1828, 1947, 1959, 2034 |
| MbiI | CCGCTC | 1 cut(s) | 292 |
| MboI | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| MflI | RGATCY | 2 cut(s) | 1826, 2032 |
| MhlI | GDGCHC | 3 cut(s) | 960, 966, 1322 |
| MlsI | TGGCCA | 2 cut(s) | 474, 1794 |
| MluI | ACGCGT | 1 cut(s) | 280 |
| MluNI | TGGCCA | 2 cut(s) | 474, 1794 |
| MlyI | GAGTC | 1 cut(s) | 1549 |
| MmeI | TCCRAC | 2 cut(s) | 705, 1782 |
| Mox20I | TGGCCA | 2 cut(s) | 474, 1794 |
| Mph1103I | ATGCAT | 2 cut(s) | 716, 2227 |
| MroI | TCCGGA | 1 cut(s) | 1003 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1011, 1567, 1630 |
| MscI | TGGCCA | 2 cut(s) | 474, 1794 |
| MseI | TTAA | 5 cut(s) | 570, 675, 1740, 1839, 1992 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1020, 1139, 1953 |
| Msp20I | TGGCCA | 2 cut(s) | 474, 1794 |
| MspA1I | CMGCKG | 1 cut(s) | 2219 |
| MspI | CCGG | 5 cut(s) | 171, 1004, 1080, 1832, 2244 |
| MspR9I | CCNGG | 2 cut(s) | 1474, 1963 |
| MvaI | CCWGG | 2 cut(s) | 1474, 1963 |
| MvnI | CGCG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 88, 471, 1046, 1259, 1853, 2063, 2072, 2222 |
| NdeI | CATATG | 1 cut(s) | 2227 |
| NdeII | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| NheI | GCTAGC | 1 cut(s) | 1277 |
| NlaIII | CATG | 9 cut(s) | 206, 923, 1496, 1908, 1939, 1958, 1987, 2201, 2281 |
| NlaIV | GGNNCC | 1 cut(s) | 957 |
| NmeAIII | GCCGAG | 1 cut(s) | 2283 |
| NmuCI | GTSAC | 1 cut(s) | 1060 |
| NsiI | ATGCAT | 2 cut(s) | 716, 2227 |
| NspI | RCATGY | 3 cut(s) | 1496, 1987, 2281 |
| PaeI | GCATGC | 2 cut(s) | 1496, 1987 |
| PaqCI | CACCTGC | 2 cut(s) | 1031, 1520 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1011, 1567, 1630 |
| PfeI | GAWTC | 5 cut(s) | 502, 748, 1192, 1766, 1909 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 481, 1606, 1801 |
| PkrI | GCNGC | 6 cut(s) | 84, 294, 2065, 2077, 2134, 2218 |
| PleI | GAGTC | 1 cut(s) | 1548 |
| PmaCI | CACGTG | 1 cut(s) | 1613 |
| PmlI | CACGTG | 1 cut(s) | 1613 |
| PpsI | GAGTC | 1 cut(s) | 1548 |
| Ppu21I | YACGTR | 1 cut(s) | 1613 |
| PsiI | TTATAA | 1 cut(s) | 2102 |
| Psp6I | CCWGG | 2 cut(s) | 1472, 1961 |
| PspCI | CACGTG | 1 cut(s) | 1613 |
| PspGI | CCWGG | 2 cut(s) | 1472, 1961 |
| PspN4I | GGNNCC | 1 cut(s) | 957 |
| PspPI | GGNCC | 1 cut(s) | 176 |
| PstI | CTGCAG | 2 cut(s) | 1042, 1517 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1037 |
| PsuI | RGATCY | 2 cut(s) | 1826, 2032 |
| PvuII | CAGCTG | 1 cut(s) | 2219 |
| RsaI | GTAC | 2 cut(s) | 1030, 1248 |
| RsaNI | GTAC | 2 cut(s) | 1029, 1247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1020, 1139, 1953 |
| SaqAI | TTAA | 5 cut(s) | 570, 675, 1740, 1839, 1992 |
| SatI | GCNGC | 6 cut(s) | 83, 293, 2064, 2076, 2133, 2217 |
| Sau3AI | GATC | 4 cut(s) | 1826, 1945, 1957, 2032 |
| Sau96I | GGNCC | 1 cut(s) | 176 |
| SbfI | CCTGCAGG | 1 cut(s) | 1042 |
| SchI | GAGTC | 1 cut(s) | 1549 |
| ScrFI | CCNGG | 2 cut(s) | 1474, 1963 |
| SdaI | CCTGCAGG | 1 cut(s) | 1042 |
| SduI | GDGCHC | 3 cut(s) | 960, 966, 1322 |
| SfaNI | GCATC | 1 cut(s) | 2212 |
| SfcI | CTRYAG | 3 cut(s) | 1038, 1513, 2268 |
| SinI | GGWCC | 1 cut(s) | 176 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1020, 1139, 1953 |
| SmlI | CTYRAG | 2 cut(s) | 662, 1238 |
| SmoI | CTYRAG | 2 cut(s) | 662, 1238 |
| SphI | GCATGC | 2 cut(s) | 1496, 1987 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1042 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspI | AATATT | 1 cut(s) | 2235 |
| SspMI | CTAG | 1 cut(s) | 1278 |
| StyD4I | CCNGG | 2 cut(s) | 1472, 1961 |
| TaaI | ACNGT | 5 cut(s) | 794, 935, 1124, 1326, 1501 |
| TaiI | ACGT | 2 cut(s) | 873, 1615 |
| TatI | WGTACW | 2 cut(s) | 1028, 1246 |
| TauI | GCSGC | 1 cut(s) | 295 |
| TfiI | GAWTC | 5 cut(s) | 502, 748, 1192, 1766, 1909 |
| Tru1I | TTAA | 5 cut(s) | 570, 675, 1740, 1839, 1992 |
| Tru9I | TTAA | 5 cut(s) | 570, 675, 1740, 1839, 1992 |
| TscAI | CASTG | 1 cut(s) | 1504 |
| TseFI | GTSAC | 1 cut(s) | 1060 |
| TseI | GCWGC | 5 cut(s) | 82, 2063, 2075, 2132, 2216 |
| Tsp45I | GTSAC | 1 cut(s) | 1060 |
| TspDTI | ATGAA | 6 cut(s) | 219, 618, 1038, 1157, 1205, 1605 |
| TspRI | CASTG | 1 cut(s) | 1504 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 481, 1606, 1801 |
| VpaK11BI | GGWCC | 1 cut(s) | 176 |
| XapI | RAATTY | 2 cut(s) | 859, 2297 |
| XceI | RCATGY | 3 cut(s) | 1496, 1987, 2281 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1902 |
| XmiI | GTMKAC | 1 cut(s) | 2116 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1011, 1567, 1630 |
| XspI | CTAG | 1 cut(s) | 1278 |
| Zsp2I | ATGCAT | 2 cut(s) | 716, 2227 |