Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00826

Orthogroup ID

OG0007267

Physical Location & Seq

Genomic Coordinates Forward (+)

9342 .. 12862

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCAGACCATGTGAGTGTGAATGCAGTTACTGAAATTAGAAGCAAGAAAGAAAAGAGAAAGAGGAGACGTCATGACGCTGACGCTGGTGACAACGATGGCAATTCTAAAATGACAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTGTTCAAGTAGAGGCAGATATTAATCAAACTAGGAGCGCCATCTTGAATTTTGAGGATATGCTTTCTCAATTTGCTTACGAGGGTTGTGGTGTTGGATGGAATAATAAACATAACAAGATGCCCAAAACGCTTTCCCAAGGTCTAGATACTACTATCTATCCTTGTAGTCAAGCTAGTAAGACGGGCCGGAACTCAACTGAGGACCATGCCACTGTGCCTGGAACCGTGAAACAAGCCAAAGTGCATCCACAGGCTGCAGAGAGGAGGAGGAAGAATGAAACTCGGCCATCCACGGAAATCCGAAAGGTTTCTCATTACTTCCAAACCTCAAGTAATGAGTGCAAGGATACAAAAGTTAAAACCCCTAAATGCCATTCAAAATCTCGCGGGGAGACCTTTCAGAAGGAGGCCACCCAAAAAAATAATGCAGATGGCCACTTGTTGCAAAGTACAAACAAGCTCAGGAAGAAATCTCCTAAAAACAGGGCTACTCTTACCGCTTCACAGAGGAAGGACGAAGCATACCGAAGGAAAACTCCAGATAACACGTGGATTCCTCCTCGCTCTGAATTTGGTCTCCTCCAAGAAGATCACTATCATGACCCTTGGAGAGTGTTGGTTATATGCATGCTCCTTAATCGGACAACAGGAACCCAGGTCTCTATTCCTTATACTTTTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

277

Amino Acids

31.64

Weight (kDa)

9.99

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07930 AT3G07930 AT3G07930 AT3G07930
fragaria_vesca	FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870
malus_domestica	MD00G1164900.v1.1
prunus_persica	Prupe.4G286600_v2.0.a1
pyrus_communis	pycom520g01030 pycom520g01040
rosa_chinensis	RchiOBHm_Chr3g0497491
rosa_laevigata	RLG00000022456
rosa_multiflora	Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013
rosa_roxburghii	Rroxscaffold_6G00387970
rosa_rugosa	Rorug03G0293200 Rorug03G0293300
rosa_samantha	Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900
rosa_wichuraiana	Rw0G018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	73
AccII	CGCG	1 cut(s)	534
AciI	CCGC	2 cut(s)	534, 645
AcoI	YGGCCR	2 cut(s)	431, 580
AcsI	RAATTY	2 cut(s)	193, 716
AcvI	CACGTG	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	3 cut(s)	152, 193, 525
AjnI	CCWGG	2 cut(s)	364, 801
AluBI	AGCT	2 cut(s)	320, 607
AluI	AGCT	2 cut(s)	320, 607
Alw26I	GTCTC	4 cut(s)	61, 533, 728, 811
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	4 cut(s)	331, 431, 555, 580
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	193, 716
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	331, 349
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	349
BaeI	ACNNNNGTAYC	2 cut(s)	486, 519
BalI	TGGCCA	1 cut(s)	582
BbrPI	CACGTG	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	5 cut(s)	92, 194, 237, 442, 572
BciT130I	CCWGG	2 cut(s)	366, 803
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	61, 533, 728, 811
BfaI	CTAG	3 cut(s)	177, 290, 321
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	366, 803
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	331, 349
BmiI	GGNNCC	2 cut(s)	370, 799
BmrFI	CCNGG	2 cut(s)	366, 803
BmsI	GCATC	2 cut(s)	255, 400
BpmI	CTGGAG	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	460
BsaAI	YACGTR	1 cut(s)	696
BsaBI	GATNNNNATC	2 cut(s)	168, 741
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	3 cut(s)	533, 728, 811
BsaJI	CCNNGG	4 cut(s)	283, 438, 752, 801
Bse8I	GATNNNNATC	2 cut(s)	168, 741
BseBI	CCWGG	2 cut(s)	366, 803
BseDI	CCNNGG	4 cut(s)	283, 438, 752, 801
BseGI	GGATG	3 cut(s)	248, 391, 434
BseJI	GATNNNNATC	2 cut(s)	168, 741
BseMII	CTCAG	2 cut(s)	336, 622
BseRI	GAGGAG	5 cut(s)	79, 424, 427, 696, 716
BseXI	GCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	4 cut(s)	333, 433, 557, 582
BsiSI	CCGG	1 cut(s)	334
BsmAI	GTCTC	4 cut(s)	61, 533, 728, 811
BsmBI	CGTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	4 cut(s)	333, 433, 557, 582
Bso31I	GGTCTC	3 cut(s)	533, 728, 811
Bsp143I	GATC	1 cut(s)	736
BspACI	CCGC	2 cut(s)	534, 645
BspANI	GGCC	4 cut(s)	333, 433, 557, 582
BspCNI	CTCAG	2 cut(s)	337, 621
BspFNI	CGCG	1 cut(s)	534
BspHI	TCATGA	2 cut(s)	73, 745
BspLI	GGNNCC	2 cut(s)	370, 799
BspMAI	CTGCAG	1 cut(s)	406
BspTNI	GGTCTC	3 cut(s)	533, 728, 811
BssECI	CCNNGG	4 cut(s)	283, 438, 752, 801
BssMI	GATC	1 cut(s)	736
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	2 cut(s)	283, 752
Bst2UI	CCWGG	2 cut(s)	366, 803
Bst4CI	ACNGT	2 cut(s)	361, 373
BstACI	GRCGYC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	776
BstDEI	CTNAG	2 cut(s)	345, 608
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	248, 391, 434
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	739
BstMAI	GTCTC	4 cut(s)	61, 533, 728, 811
BstMBI	GATC	1 cut(s)	736
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	366, 803
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	364, 801
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	4 cut(s)	333, 433, 557, 582
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	248, 391, 434
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	776
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	2 cut(s)	73, 745
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	331, 349
CseI	GACGC	2 cut(s)	86, 92
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	5 cut(s)	11, 74, 353, 746, 775
CviJI	RGCY	9 cut(s)	320, 333, 383, 401, 433, 557, 582, 607, 635
CviKI_1	RGCY	9 cut(s)	320, 333, 383, 401, 433, 557, 582, 607, 635
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	2 cut(s)	345, 608
DpnI	GATC	1 cut(s)	738
DpnII	GATC	1 cut(s)	736
EaeI	YGGCCR	2 cut(s)	431, 580
Eco130I	CCWWGG	2 cut(s)	283, 752
Eco31I	GGTCTC	3 cut(s)	533, 728, 811
Eco47I	GGWCC	1 cut(s)	349
Eco72I	CACGTG	1 cut(s)	696
EcoRII	CCWGG	2 cut(s)	364, 801
EcoT14I	CCWWGG	2 cut(s)	283, 752
EcoT22I	ATGCAT	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	283, 752
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	14, 77, 356, 749, 778
FatI	CATG	5 cut(s)	10, 73, 352, 745, 774
FauI	CCCGC	1 cut(s)	527
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	3 cut(s)	255, 378, 421
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	3 cut(s)	177, 290, 321
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	669
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	4 cut(s)	333, 433, 557, 582
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	2 cut(s)	86, 92
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	5 cut(s)	14, 77, 356, 749, 778
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	700
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	5 cut(s)	7, 449, 549, 715, 789
Hpy188III	TCNNGA	6 cut(s)	74, 190, 290, 610, 686, 746
HpyAV	CCTTC	3 cut(s)	544, 652, 669
HpyCH4III	ACNGT	2 cut(s)	361, 373
HpyCH4IV	ACGT	2 cut(s)	70, 695
HpyCH4V	TGCA	7 cut(s)	26, 391, 404, 489, 575, 592, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	345, 608
HpySE526I	ACGT	2 cut(s)	70, 695
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	14, 77, 356, 749, 778
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	736
LmnI	GCTCC	2 cut(s)	180, 783
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	255, 400
MaeI	CTAG	3 cut(s)	177, 290, 321
MaeII	ACGT	2 cut(s)	70, 695
MaeIII	GTNAC	2 cut(s)	28, 89
MalI	GATC	1 cut(s)	738
MboI	GATC	1 cut(s)	736
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	5 cut(s)	36, 103, 193, 215, 716
MluNI	TGGCCA	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	220
Mox20I	TGGCCA	1 cut(s)	582
Mph1103I	ATGCAT	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	3 cut(s)	168, 504, 783
MslI	CAYNNNNRTG	2 cut(s)	15, 744
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	366, 803
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	2 cut(s)	366, 803
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	736
NlaIII	CATG	5 cut(s)	14, 77, 356, 749, 778
NlaIV	GGNNCC	2 cut(s)	370, 799
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	776
NspI	RCATGY	1 cut(s)	778
PaeI	GCATGC	1 cut(s)	778
PagI	TCATGA	2 cut(s)	73, 745
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	700
PkrI	GCNGC	1 cut(s)	403
PmaCI	CACGTG	1 cut(s)	696
PmlI	CACGTG	1 cut(s)	696
Ppu21I	YACGTR	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	364, 801
PspCI	CACGTG	1 cut(s)	696
PspGI	CCWGG	2 cut(s)	364, 801
PspN4I	GGNNCC	2 cut(s)	370, 799
PspPI	GGNCC	2 cut(s)	331, 349
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	15, 744
SaqAI	TTAA	3 cut(s)	168, 504, 783
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	1 cut(s)	736
Sau96I	GGNCC	2 cut(s)	331, 349
ScrFI	CCNGG	2 cut(s)	366, 803
SetI	ASST	9 cut(s)	73, 289, 322, 456, 476, 545, 609, 698, 807
SfaNI	GCATC	2 cut(s)	255, 400
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	15, 744
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
SphI	GCATGC	1 cut(s)	778
Sse9I	AATT	5 cut(s)	36, 103, 193, 215, 716
SsiI	CCGC	2 cut(s)	534, 645
SspMI	CTAG	3 cut(s)	177, 290, 321
StyD4I	CCNGG	2 cut(s)	364, 801
StyI	CCWWGG	2 cut(s)	283, 752
TaaI	ACNGT	2 cut(s)	361, 373
TaiI	ACGT	2 cut(s)	73, 698
TasI	AATT	5 cut(s)	36, 103, 193, 215, 716
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	3 cut(s)	168, 504, 783
Tru9I	TTAA	3 cut(s)	168, 504, 783
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	193, 716
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	3 cut(s)	177, 290, 321
ZraI	GACGTC	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.