Rh3CG371200
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007267
Physical Location & Seq
Forward (+)
47590544 .. 47595693
5150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG371200.1

Sequence Viewer

Length: 1392 bp
ATGGGAGCGAAAACATATGTGAGAATGGGAGAGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCTGAGACCACGTCCAACAGGAGGAGGAGAAGAAAAACTGTCGGGCAGAAGCCAAAGCCGGTGGTGGTGTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGTGGATTTCCAGAATCAGCCGGTGACTAAGCCGGCGGTGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCTGTGGTGGATTTCCAGAATCAGCCGGTGACTAAGCCGGCGGCGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGCTGATTTCCAGAATCAGCCGGTGACTAAGCCGGCGGCGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACAAAGCCGGTGGTGGTTTCTCGCTATTTCCAGACTCAGCCGGTGACTAAAGCGGTGGTGGAAATAGGGACTCAACCAGAAAACGGTAAGATAACCTCCTCCGAGTCAATGTCAGACCATGTGAATGTGAATGCAGTTACTGAAATTAGAAGCAAGAAAGAAAAGAGAAAGAGGAGACGCCATGACGCTGACGCTGGTGACAACGATGGCAATTCTAAAATGACAAAGAAGAAGAAGAAGAGGAAGAAGAGTGTTCAAGTAGAGGCAGATATTAATCAAACTAGGAGCGCCATCTTGAATTTTGAGGATATGCTTTCTCAATTTGCGTACGAGGGTTGTGGTGTTGAATGGAATAATAAACATAACAAGATGCCCGAAACGCTTTCCCAAGGTCTAGATACAACTATCTATCCTTGTAGTCAAGCTAGTAAGACGGGCCGGAACTCAACTGAGGACCATGCCACTGTGCCTGGAACCGTGAAACAAGCCAAAGTGCATCCACAGGCTGCAGAGAGGAGGAGGAAGAATGAAACTCGGCCATCCACGGAAATCCGAAAGGTTTCTCATTACTTCCAAACCTCAAGTAATGAGTGCAAGGATACAAAAGTTAAAACCCCTAAATGTCATTCAAAATCTCGCGGGGAGACCTTTCAGAAGGAGGCCACCCAAAAAAATAATGCAGATGGCCACTTGTTGCAAAGTACAAACAAGCTCAGGAAGAAATCTCCTAAAAACAGGGCTACTCTTACCGCTTCACAGAGGAAGGACGAAGCATACCGAAGGAAAACTCCAGATAACACGTGGATTCCTCCTCGCTCTGAATTTGGTCTCCTCCAAGAAGATCACTATCATGACCCTTGGAGAGTGTTGGTTATATGCATGCTCCTTAATCGGACAACAGGAACCCAGGTCTCTATTCCTTATACTTTTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

463

Amino Acids

52.44

Weight (kDa)

10.13

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1092
AcoI YGGCCR 2 cut(s) 989, 1138
AcsI RAATTY 2 cut(s) 751, 1274
AcvI CACGTG 1 cut(s) 1254
AcyI GRCGYC 1 cut(s) 631
AfaI GTAC 2 cut(s) 782, 1156
AfiI CCNNNNNNNGG 2 cut(s) 81, 536
AflIII ACRYGT 1 cut(s) 1251
AgsI TTSAA 4 cut(s) 710, 751, 800, 1083
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 2 cut(s) 922, 1359
AluBI AGCT 2 cut(s) 878, 1165
AluI AGCT 2 cut(s) 878, 1165
Alw26I GTCTC 6 cut(s) 59, 135, 622, 1091, 1286, 1369
AlwNI CAGNNNCTG 1 cut(s) 593
AoxI GGCC 4 cut(s) 889, 989, 1113, 1138
ApeKI GCWGC 1 cut(s) 959
ApoI RAATTY 2 cut(s) 751, 1274
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 889, 907
AvaII GGWCC 1 cut(s) 907
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BalI TGGCCA 1 cut(s) 1140
BbrPI CACGTG 1 cut(s) 1254
BbvI GCAGC 1 cut(s) 946
BccI CCATC 4 cut(s) 653, 752, 1000, 1130
BciT130I CCWGG 2 cut(s) 924, 1361
BciVI GTATCC 1 cut(s) 1045
BcoDI GTCTC 6 cut(s) 59, 135, 622, 1091, 1286, 1369
BfaI CTAG 3 cut(s) 735, 848, 879
BfmI CTRYAG 1 cut(s) 960
BfoI RGCGCY 1 cut(s) 744
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 3 cut(s) 333, 417, 960
BlsI GCNGC 3 cut(s) 334, 418, 961
Bme1390I CCNGG 2 cut(s) 924, 1361
Bme18I GGWCC 1 cut(s) 907
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 889, 907
BmiI GGNNCC 2 cut(s) 928, 1357
BmrFI CCNGG 2 cut(s) 924, 1361
BmsI GCATC 2 cut(s) 813, 958
BpmI CTGGAG 1 cut(s) 1227
Bpu10I CCTNAGC 1 cut(s) 1166
BpuEI CTTGAG 1 cut(s) 1018
BsaAI YACGTR 1 cut(s) 1254
BsaBI GATNNNNATC 2 cut(s) 726, 1299
BsaHI GRCGYC 1 cut(s) 631
BsaI GGTCTC 4 cut(s) 59, 1091, 1286, 1369
BsaJI CCNNGG 4 cut(s) 841, 996, 1310, 1359
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 536
Bse8I GATNNNNATC 2 cut(s) 726, 1299
BseBI CCWGG 2 cut(s) 924, 1361
BseDI CCNNGG 4 cut(s) 841, 996, 1310, 1359
BseGI GGATG 2 cut(s) 949, 992
BseJI GATNNNNATC 2 cut(s) 726, 1299
BseLI CCNNNNNNNGG 2 cut(s) 81, 536
BseMII CTCAG 4 cut(s) 54, 503, 894, 1180
BseRI GAGGAG 8 cut(s) 97, 100, 541, 640, 982, 985, 1254, 1274
BseXI GCAGC 1 cut(s) 946
Bsh1236I CGCG 1 cut(s) 1092
BshFI GGCC 4 cut(s) 891, 991, 1115, 1140
BsiWI CGTACG 1 cut(s) 780
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 2 cut(s) 81, 536
BsmAI GTCTC 6 cut(s) 59, 135, 622, 1091, 1286, 1369
BsmBI CGTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 4 cut(s) 891, 991, 1115, 1140
Bso31I GGTCTC 4 cut(s) 59, 1091, 1286, 1369
Bsp143I GATC 1 cut(s) 1294
BspANI GGCC 4 cut(s) 891, 991, 1115, 1140
BspCNI CTCAG 4 cut(s) 55, 502, 895, 1179
BspFNI CGCG 1 cut(s) 1092
BspHI TCATGA 1 cut(s) 1303
BspLI GGNNCC 2 cut(s) 928, 1357
BspMAI CTGCAG 1 cut(s) 964
BspTNI GGTCTC 4 cut(s) 59, 1091, 1286, 1369
BssECI CCNNGG 4 cut(s) 841, 996, 1310, 1359
BssMI GATC 1 cut(s) 1294
BssNI GRCGYC 1 cut(s) 631
BssT1I CCWWGG 2 cut(s) 841, 1310
Bst2UI CCWGG 2 cut(s) 924, 1361
Bst4CI ACNGT 4 cut(s) 100, 539, 919, 931
Bst6I CTCTTC 2 cut(s) 686, 695
BstACI GRCGYC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 1254
BstC8I GCNNGC 4 cut(s) 246, 330, 414, 1334
BstDEI CTNAG 7 cut(s) 63, 240, 324, 408, 489, 903, 1166
BstDSI CCRYGG 1 cut(s) 996
BstEII GGTNACC 4 cut(s) 154, 199, 283, 367
BstF5I GGATG 2 cut(s) 949, 992
BstFNI CGCG 1 cut(s) 1092
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 1 cut(s) 1297
BstMAI GTCTC 6 cut(s) 59, 135, 622, 1091, 1286, 1369
BstMBI GATC 1 cut(s) 1294
BstMWI GCNNNNNNNGC 1 cut(s) 832
BstNI CCWGG 2 cut(s) 924, 1361
BstNSI RCATGY 1 cut(s) 1336
BstPI GGTNACC 4 cut(s) 154, 199, 283, 367
BstSCI CCNGG 2 cut(s) 922, 1359
BstSFI CTRYAG 1 cut(s) 960
BstUI CGCG 1 cut(s) 1092
BstV1I GCAGC 1 cut(s) 946
BstXI CCANNNNNNTGG 4 cut(s) 166, 211, 295, 379
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 4 cut(s) 891, 991, 1115, 1140
BtgI CCRYGG 1 cut(s) 996
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 2 cut(s) 949, 992
BtsIMutI CAGTG 1 cut(s) 915
Cac8I GCNNGC 4 cut(s) 246, 330, 414, 1334
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 1303
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 889, 907
CseI GACGC 3 cut(s) 639, 647, 653
Csp6I GTAC 2 cut(s) 781, 1155
CspCI CAANNNNNGTGG 4 cut(s) 102, 137, 444, 479
CviAII CATG 5 cut(s) 572, 635, 911, 1304, 1333
CviQI GTAC 2 cut(s) 781, 1155
DdeI CTNAG 7 cut(s) 63, 240, 324, 408, 489, 903, 1166
DpnI GATC 1 cut(s) 1296
DpnII GATC 1 cut(s) 1294
EaeI YGGCCR 2 cut(s) 989, 1138
Eam1104I CTCTTC 2 cut(s) 686, 695
EarI CTCTTC 2 cut(s) 686, 695
Eco130I CCWWGG 2 cut(s) 841, 1310
Eco31I GGTCTC 4 cut(s) 59, 1091, 1286, 1369
Eco47I GGWCC 1 cut(s) 907
Eco72I CACGTG 1 cut(s) 1254
Eco91I GGTNACC 4 cut(s) 154, 199, 283, 367
EcoO65I GGTNACC 4 cut(s) 154, 199, 283, 367
EcoRII CCWGG 2 cut(s) 922, 1359
EcoT14I CCWWGG 2 cut(s) 841, 1310
EcoT22I ATGCAT 1 cut(s) 1334
ErhI CCWWGG 2 cut(s) 841, 1310
Esp3I CGTCTC 1 cut(s) 622
FaeI CATG 5 cut(s) 575, 638, 914, 1307, 1336
FaqI GGGAC 1 cut(s) 535
FatI CATG 5 cut(s) 571, 634, 910, 1303, 1332
FauI CCCGC 1 cut(s) 1085
FauNDI CATATG 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 333, 417, 960
FokI GGATG 2 cut(s) 936, 979
Fsp4HI GCNGC 3 cut(s) 333, 417, 960
FspBI CTAG 3 cut(s) 735, 848, 879
GlaI GCGC 1 cut(s) 742
GluI GCNGC 3 cut(s) 333, 417, 960
GsuI CTGGAG 1 cut(s) 1227
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 4 cut(s) 891, 991, 1115, 1140
HgaI GACGC 3 cut(s) 639, 647, 653
HhaI GCGC 1 cut(s) 743
Hin1I GRCGYC 1 cut(s) 631
Hin1II CATG 5 cut(s) 575, 638, 914, 1307, 1336
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
Hpy188I TCNGA 6 cut(s) 556, 568, 1007, 1107, 1273, 1347
HpyAV CCTTC 3 cut(s) 1102, 1210, 1227
HpyCH4III ACNGT 4 cut(s) 100, 539, 919, 931
HpyCH4IV ACGT 2 cut(s) 71, 1253
HpyCH4V TGCA 7 cut(s) 587, 949, 962, 1047, 1133, 1150, 1332
HpyF10VI GCNNNNNNNGC 1 cut(s) 832
HpyF3I CTNAG 7 cut(s) 63, 240, 324, 408, 489, 903, 1166
HpySE526I ACGT 2 cut(s) 71, 1253
Hsp92I GRCGYC 1 cut(s) 631
Hsp92II CATG 5 cut(s) 575, 638, 914, 1307, 1336
HspAI GCGC 1 cut(s) 741
KroI GCCGGC 3 cut(s) 244, 328, 412
KroNI GCCGGC 3 cut(s) 246, 330, 414
Kzo9I GATC 1 cut(s) 1294
LmnI GCTCC 3 cut(s) 5, 738, 1341
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 2 cut(s) 813, 958
MaeI CTAG 3 cut(s) 735, 848, 879
MaeII ACGT 2 cut(s) 71, 1253
MalI GATC 1 cut(s) 1296
MboI GATC 1 cut(s) 1294
MlsI TGGCCA 1 cut(s) 1140
MluCI AATT 5 cut(s) 597, 664, 751, 773, 1274
MluNI TGGCCA 1 cut(s) 1140
MlyI GAGTC 3 cut(s) 481, 517, 566
MmeI TCCRAC 1 cut(s) 99
Mox20I TGGCCA 1 cut(s) 1140
Mph1103I ATGCAT 1 cut(s) 1334
MroNI GCCGGC 3 cut(s) 244, 328, 412
MroXI GAANNNNTTC 1 cut(s) 1012
MscI TGGCCA 1 cut(s) 1140
MseI TTAA 3 cut(s) 726, 1062, 1341
MslI CAYNNNNRTG 2 cut(s) 576, 1302
Msp20I TGGCCA 1 cut(s) 1140
MspR9I CCNGG 2 cut(s) 924, 1361
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 2 cut(s) 924, 1361
MvnI CGCG 1 cut(s) 1092
MwoI GCNNNNNNNGC 1 cut(s) 832
NaeI GCCGGC 3 cut(s) 246, 330, 414
NdeI CATATG 1 cut(s) 16
NdeII GATC 1 cut(s) 1294
NgoMIV GCCGGC 3 cut(s) 244, 328, 412
NlaIII CATG 5 cut(s) 575, 638, 914, 1307, 1336
NlaIV GGNNCC 2 cut(s) 928, 1357
NmeAIII GCCGAG 1 cut(s) 967
NsiI ATGCAT 1 cut(s) 1334
NspI RCATGY 1 cut(s) 1336
PaeI GCATGC 1 cut(s) 1336
PagI TCATGA 1 cut(s) 1303
PctI GAATGC 1 cut(s) 589
PdiI GCCGGC 3 cut(s) 246, 330, 414
PdmI GAANNNNTTC 1 cut(s) 1012
PfeI GAWTC 9 cut(s) 145, 190, 226, 274, 310, 358, 394, 442, 1258
Pfl23II CGTACG 1 cut(s) 780
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 334, 418, 961
PleI GAGTC 3 cut(s) 481, 517, 565
PmaCI CACGTG 1 cut(s) 1254
PmlI CACGTG 1 cut(s) 1254
PpsI GAGTC 3 cut(s) 481, 517, 565
Ppu21I YACGTR 1 cut(s) 1254
PshBI ATTAAT 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 922, 1359
PspCI CACGTG 1 cut(s) 1254
PspEI GGTNACC 4 cut(s) 154, 199, 283, 367
PspGI CCWGG 2 cut(s) 922, 1359
PspLI CGTACG 1 cut(s) 780
PspN4I GGNNCC 2 cut(s) 928, 1357
PspPI GGNCC 2 cut(s) 889, 907
PstI CTGCAG 1 cut(s) 964
PstNI CAGNNNCTG 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 2 cut(s) 782, 1156
RsaNI GTAC 2 cut(s) 781, 1155
RseI CAYNNNNRTG 2 cut(s) 576, 1302
SaqAI TTAA 3 cut(s) 726, 1062, 1341
SatI GCNGC 3 cut(s) 333, 417, 960
Sau3AI GATC 1 cut(s) 1294
Sau96I GGNCC 2 cut(s) 889, 907
SchI GAGTC 3 cut(s) 481, 517, 566
ScrFI CCNGG 2 cut(s) 924, 1361
SfaNI GCATC 2 cut(s) 813, 958
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 1 cut(s) 907
SmiMI CAYNNNNRTG 2 cut(s) 576, 1302
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
SphI GCATGC 1 cut(s) 1336
Sse9I AATT 5 cut(s) 597, 664, 751, 773, 1274
SspMI CTAG 3 cut(s) 735, 848, 879
StyD4I CCNGG 2 cut(s) 922, 1359
StyI CCWWGG 2 cut(s) 841, 1310
TaaI ACNGT 4 cut(s) 100, 539, 919, 931
TaiI ACGT 2 cut(s) 74, 1256
TasI AATT 5 cut(s) 597, 664, 751, 773, 1274
TatI WGTACW 1 cut(s) 1154
TauI GCSGC 2 cut(s) 335, 419
TfiI GAWTC 9 cut(s) 145, 190, 226, 274, 310, 358, 394, 442, 1258
Tru1I TTAA 3 cut(s) 726, 1062, 1341
Tru9I TTAA 3 cut(s) 726, 1062, 1341
TscAI CASTG 1 cut(s) 922
TseI GCWGC 1 cut(s) 959
TspDTI ATGAA 1 cut(s) 996
TspGWI ACGGA 1 cut(s) 1013
TspRI CASTG 1 cut(s) 922
Tth111I GACNNNGTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 907
VspI ATTAAT 1 cut(s) 726
XapI RAATTY 2 cut(s) 751, 1274
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 1 cut(s) 1336
XcmI CCANNNNNNNNNTGG 4 cut(s) 166, 211, 295, 1251
XmnI GAANNNNTTC 1 cut(s) 1012
XspI CTAG 3 cut(s) 735, 848, 879
Zsp2I ATGCAT 1 cut(s) 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.