HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07930 AT3G07930 AT3G07930 AT3G07930 |
| fragaria_vesca | FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 |
| malus_domestica | MD00G1164900.v1.1 |
| prunus_persica | Prupe.4G286600_v2.0.a1 |
| pyrus_communis | pycom520g01030 pycom520g01040 |
| rosa_chinensis | RchiOBHm_Chr3g0497491 |
| rosa_laevigata | RLG00000022456 |
| rosa_multiflora | Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00387970 |
| rosa_rugosa | Rorug03G0293200 Rorug03G0293300 |
| rosa_samantha | Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900 |
| rosa_wichuraiana | Rw0G018500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1379 |
| Acc36I | ACCTGC | 1 cut(s) | 1549 |
| AccI | GTMKAC | 1 cut(s) | 1393 |
| AccII | CGCG | 2 cut(s) | 1020, 1360 |
| AcoI | YGGCCR | 2 cut(s) | 917, 1066 |
| AcsI | RAATTY | 3 cut(s) | 679, 1202, 1571 |
| AcvI | CACGTG | 1 cut(s) | 1182 |
| AcyI | GRCGYC | 1 cut(s) | 562 |
| AdeI | CACNNNGTG | 1 cut(s) | 1323 |
| AfaI | GTAC | 2 cut(s) | 1084, 1461 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 51, 455, 1478 |
| AflIII | ACRYGT | 1 cut(s) | 1179 |
| AgsI | TTSAA | 4 cut(s) | 635, 679, 728, 1011 |
| AjiI | CACGTC | 1 cut(s) | 42 |
| AjnI | CCWGG | 2 cut(s) | 850, 1471 |
| AluBI | AGCT | 3 cut(s) | 806, 1449, 1493 |
| AluI | AGCT | 3 cut(s) | 806, 1449, 1493 |
| Alw26I | GTCTC | 6 cut(s) | 29, 105, 553, 1019, 1214, 1431 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 524 |
| AoxI | GGCC | 5 cut(s) | 817, 917, 1041, 1066, 1601 |
| ApeKI | GCWGC | 3 cut(s) | 887, 1340, 1490 |
| ApoI | RAATTY | 3 cut(s) | 679, 1202, 1571 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 473, 505 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 940 |
| AspLEI | GCGC | 2 cut(s) | 671, 1422 |
| AspS9I | GGNCC | 3 cut(s) | 817, 835, 1452 |
| AsuHPI | GGTGA | 6 cut(s) | 136, 181, 226, 262, 346, 427 |
| AvaII | GGWCC | 2 cut(s) | 835, 1452 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 972, 1005, 1443, 1476 |
| BalI | TGGCCA | 1 cut(s) | 1068 |
| BbrPI | CACGTG | 1 cut(s) | 1182 |
| BbsI | GAAGAC | 1 cut(s) | 632 |
| BbvI | GCAGC | 3 cut(s) | 874, 1327, 1502 |
| BccI | CCATC | 4 cut(s) | 575, 680, 928, 1058 |
| BciT130I | CCWGG | 2 cut(s) | 852, 1473 |
| BciVI | GTATCC | 1 cut(s) | 973 |
| BcoDI | GTCTC | 6 cut(s) | 29, 105, 553, 1019, 1214, 1431 |
| BfaI | CTAG | 3 cut(s) | 663, 776, 807 |
| BfmI | CTRYAG | 2 cut(s) | 888, 1605 |
| BfoI | RGCGCY | 1 cut(s) | 672 |
| BfuAI | ACCTGC | 1 cut(s) | 1549 |
| BfuI | GTATCC | 1 cut(s) | 973 |
| BglII | AGATCT | 1 cut(s) | 1382 |
| BisI | GCNGC | 4 cut(s) | 348, 888, 1341, 1491 |
| BlsI | GCNGC | 4 cut(s) | 349, 889, 1342, 1492 |
| Bme1390I | CCNGG | 2 cut(s) | 852, 1473 |
| Bme18I | GGWCC | 2 cut(s) | 835, 1452 |
| BmgBI | CACGTC | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 3 cut(s) | 817, 835, 1452 |
| BmiI | GGNNCC | 3 cut(s) | 856, 1285, 1454 |
| BmrFI | CCNGG | 2 cut(s) | 852, 1473 |
| BmrI | ACTGGG | 2 cut(s) | 1282, 1576 |
| BmsI | GCATC | 4 cut(s) | 741, 886, 1486, 1593 |
| BmuI | ACTGGG | 2 cut(s) | 1282, 1576 |
| BpiI | GAAGAC | 1 cut(s) | 632 |
| BpmI | CTGGAG | 1 cut(s) | 1155 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1094 |
| BpuEI | CTTGAG | 1 cut(s) | 946 |
| BsaAI | YACGTR | 1 cut(s) | 1182 |
| BsaBI | GATNNNNATC | 2 cut(s) | 654, 1227 |
| BsaHI | GRCGYC | 1 cut(s) | 562 |
| BsaI | GGTCTC | 3 cut(s) | 29, 1019, 1214 |
| BsaJI | CCNNGG | 5 cut(s) | 769, 924, 1238, 1472, 1598 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 51, 455, 1478 |
| Bse1I | ACTGG | 3 cut(s) | 1288, 1522, 1571 |
| Bse8I | GATNNNNATC | 2 cut(s) | 654, 1227 |
| BseBI | CCWGG | 2 cut(s) | 852, 1473 |
| BseDI | CCNNGG | 5 cut(s) | 769, 924, 1238, 1472, 1598 |
| BseGI | GGATG | 2 cut(s) | 877, 920 |
| BseJI | GATNNNNATC | 2 cut(s) | 654, 1227 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 51, 455, 1478 |
| BseMII | CTCAG | 7 cut(s) | 24, 422, 822, 1108, 1338, 1442, 1455 |
| BseNI | ACTGG | 3 cut(s) | 1288, 1522, 1571 |
| BseRI | GAGGAG | 9 cut(s) | 67, 70, 460, 571, 656, 910, 913, 1182, 1202 |
| BseXI | GCAGC | 3 cut(s) | 874, 1327, 1502 |
| BsgI | GTGCAG | 1 cut(s) | 1498 |
| Bsh1236I | CGCG | 2 cut(s) | 1020, 1360 |
| BshFI | GGCC | 5 cut(s) | 819, 919, 1043, 1068, 1603 |
| BslFI | GGGAC | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 51, 455, 1478 |
| BsmAI | GTCTC | 6 cut(s) | 29, 105, 553, 1019, 1214, 1431 |
| BsmBI | CGTCTC | 1 cut(s) | 553 |
| BsmFI | GGGAC | 1 cut(s) | 454 |
| BsmI | GAATGC | 1 cut(s) | 520 |
| BsnI | GGCC | 5 cut(s) | 819, 919, 1043, 1068, 1603 |
| Bso31I | GGTCTC | 3 cut(s) | 29, 1019, 1214 |
| Bsp143I | GATC | 2 cut(s) | 1222, 1382 |
| BspANI | GGCC | 5 cut(s) | 819, 919, 1043, 1068, 1603 |
| BspCNI | CTCAG | 7 cut(s) | 25, 421, 823, 1107, 1339, 1441, 1456 |
| BspFNI | CGCG | 2 cut(s) | 1020, 1360 |
| BspHI | TCATGA | 1 cut(s) | 1231 |
| BspLI | GGNNCC | 3 cut(s) | 856, 1285, 1454 |
| BspMAI | CTGCAG | 2 cut(s) | 892, 1609 |
| BspMI | ACCTGC | 1 cut(s) | 1549 |
| BspTNI | GGTCTC | 3 cut(s) | 29, 1019, 1214 |
| BsrI | ACTGG | 3 cut(s) | 1288, 1522, 1571 |
| BssECI | CCNNGG | 5 cut(s) | 769, 924, 1238, 1472, 1598 |
| BssMI | GATC | 2 cut(s) | 1222, 1382 |
| BssNI | GRCGYC | 1 cut(s) | 562 |
| BssT1I | CCWWGG | 2 cut(s) | 769, 1238 |
| Bst2UI | CCWGG | 2 cut(s) | 852, 1473 |
| Bst4CI | ACNGT | 4 cut(s) | 70, 458, 847, 859 |
| Bst6I | CTCTTC | 1 cut(s) | 636 |
| BstACI | GRCGYC | 1 cut(s) | 562 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1340, 1496 |
| BstBAI | YACGTR | 1 cut(s) | 1182 |
| BstC8I | GCNNGC | 4 cut(s) | 261, 345, 1262, 1605 |
| BstDSI | CCRYGG | 1 cut(s) | 924 |
| BstEII | GGTNACC | 3 cut(s) | 124, 169, 214 |
| BstF5I | GGATG | 2 cut(s) | 877, 920 |
| BstFNI | CGCG | 2 cut(s) | 1020, 1360 |
| BstH2I | RGCGCY | 1 cut(s) | 672 |
| BstHHI | GCGC | 2 cut(s) | 671, 1422 |
| BstKTI | GATC | 2 cut(s) | 1225, 1385 |
| BstMAI | GTCTC | 6 cut(s) | 29, 105, 553, 1019, 1214, 1431 |
| BstMBI | GATC | 2 cut(s) | 1222, 1382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 760, 1340, 1496 |
| BstNI | CCWGG | 2 cut(s) | 852, 1473 |
| BstNSI | RCATGY | 2 cut(s) | 1264, 1426 |
| BstPI | GGTNACC | 3 cut(s) | 124, 169, 214 |
| BstSCI | CCNGG | 2 cut(s) | 850, 1471 |
| BstSFI | CTRYAG | 2 cut(s) | 888, 1605 |
| BstUI | CGCG | 2 cut(s) | 1020, 1360 |
| BstV1I | GCAGC | 3 cut(s) | 874, 1327, 1502 |
| BstV2I | GAAGAC | 1 cut(s) | 632 |
| BstX2I | RGATCY | 1 cut(s) | 1382 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 136, 181, 226, 310 |
| BstYI | RGATCY | 1 cut(s) | 1382 |
| BsuI | GTATCC | 1 cut(s) | 973 |
| BsuRI | GGCC | 5 cut(s) | 819, 919, 1043, 1068, 1603 |
| BtgI | CCRYGG | 1 cut(s) | 924 |
| BtrI | CACGTC | 1 cut(s) | 42 |
| BtsCI | GGATG | 2 cut(s) | 877, 920 |
| BtsIMutI | CAGTG | 2 cut(s) | 843, 1515 |
| BveI | ACCTGC | 1 cut(s) | 1549 |
| Cac8I | GCNNGC | 4 cut(s) | 261, 345, 1262, 1605 |
| CaiI | CAGNNNCTG | 1 cut(s) | 524 |
| CciI | TCATGA | 1 cut(s) | 1231 |
| CfoI | GCGC | 2 cut(s) | 671, 1422 |
| Cfr13I | GGNCC | 3 cut(s) | 817, 835, 1452 |
| CseI | GACGC | 2 cut(s) | 570, 578 |
| Csp6I | GTAC | 2 cut(s) | 1083, 1460 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 72, 107 |
| CviAII | CATG | 7 cut(s) | 503, 566, 839, 1232, 1261, 1423, 1457 |
| CviQI | GTAC | 2 cut(s) | 1083, 1460 |
| DpnI | GATC | 2 cut(s) | 1224, 1384 |
| DpnII | GATC | 2 cut(s) | 1222, 1382 |
| DraIII | CACNNNGTG | 1 cut(s) | 1323 |
| EaeI | YGGCCR | 2 cut(s) | 917, 1066 |
| Eam1104I | CTCTTC | 1 cut(s) | 636 |
| EarI | CTCTTC | 1 cut(s) | 636 |
| Eco130I | CCWWGG | 2 cut(s) | 769, 1238 |
| Eco147I | AGGCCT | 1 cut(s) | 1603 |
| Eco31I | GGTCTC | 3 cut(s) | 29, 1019, 1214 |
| Eco47I | GGWCC | 2 cut(s) | 835, 1452 |
| Eco72I | CACGTG | 1 cut(s) | 1182 |
| Eco91I | GGTNACC | 3 cut(s) | 124, 169, 214 |
| EcoO65I | GGTNACC | 3 cut(s) | 124, 169, 214 |
| EcoRII | CCWGG | 2 cut(s) | 850, 1471 |
| EcoT14I | CCWWGG | 2 cut(s) | 769, 1238 |
| EcoT22I | ATGCAT | 2 cut(s) | 1262, 1501 |
| ErhI | CCWWGG | 2 cut(s) | 769, 1238 |
| Esp3I | CGTCTC | 1 cut(s) | 553 |
| FaeI | CATG | 7 cut(s) | 506, 569, 842, 1235, 1264, 1426, 1460 |
| FaqI | GGGAC | 1 cut(s) | 454 |
| FatI | CATG | 7 cut(s) | 502, 565, 838, 1231, 1260, 1422, 1456 |
| FauI | CCCGC | 2 cut(s) | 1013, 1353 |
| FauNDI | CATATG | 1 cut(s) | 1501 |
| FblI | GTMKAC | 1 cut(s) | 1393 |
| Fnu4HI | GCNGC | 4 cut(s) | 348, 888, 1341, 1491 |
| FokI | GGATG | 2 cut(s) | 864, 907 |
| Fsp4HI | GCNGC | 4 cut(s) | 348, 888, 1341, 1491 |
| FspBI | CTAG | 3 cut(s) | 663, 776, 807 |
| GlaI | GCGC | 2 cut(s) | 670, 1421 |
| GluI | GCNGC | 4 cut(s) | 348, 888, 1341, 1491 |
| GsuI | CTGGAG | 1 cut(s) | 1155 |
| HaeII | RGCGCY | 1 cut(s) | 672 |
| HaeIII | GGCC | 5 cut(s) | 819, 919, 1043, 1068, 1603 |
| HgaI | GACGC | 2 cut(s) | 570, 578 |
| HhaI | GCGC | 2 cut(s) | 671, 1422 |
| Hin1I | GRCGYC | 1 cut(s) | 562 |
| Hin1II | CATG | 7 cut(s) | 506, 569, 842, 1235, 1264, 1426, 1460 |
| Hin6I | GCGC | 2 cut(s) | 669, 1420 |
| HinP1I | GCGC | 2 cut(s) | 669, 1420 |
| HphI | GGTGA | 6 cut(s) | 136, 181, 226, 262, 346, 427 |
| Hpy166II | GTNNAC | 1 cut(s) | 1394 |
| Hpy188I | TCNGA | 8 cut(s) | 475, 487, 499, 935, 1035, 1201, 1275, 1309 |
| Hpy8I | GTNNAC | 1 cut(s) | 1394 |
| HpyAV | CCTTC | 3 cut(s) | 1030, 1138, 1155 |
| HpyCH4III | ACNGT | 4 cut(s) | 70, 458, 847, 859 |
| HpyCH4IV | ACGT | 2 cut(s) | 41, 1181 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 760, 1340, 1496 |
| HpySE526I | ACGT | 2 cut(s) | 41, 1181 |
| Hsp92I | GRCGYC | 1 cut(s) | 562 |
| Hsp92II | CATG | 7 cut(s) | 506, 569, 842, 1235, 1264, 1426, 1460 |
| HspAI | GCGC | 2 cut(s) | 669, 1420 |
| KroI | GCCGGC | 2 cut(s) | 259, 343 |
| KroNI | GCCGGC | 2 cut(s) | 261, 345 |
| Kzo9I | GATC | 2 cut(s) | 1222, 1382 |
| LmnI | GCTCC | 3 cut(s) | 57, 666, 1269 |
| Lsp1109I | GCAGC | 3 cut(s) | 874, 1327, 1502 |
| LweI | GCATC | 4 cut(s) | 741, 886, 1486, 1593 |
| MaeI | CTAG | 3 cut(s) | 663, 776, 807 |
| MaeII | ACGT | 2 cut(s) | 41, 1181 |
| MaeIII | GTNAC | 8 cut(s) | 124, 169, 214, 250, 298, 334, 415, 520 |
| MalI | GATC | 2 cut(s) | 1224, 1384 |
| MboI | GATC | 2 cut(s) | 1222, 1382 |
| MflI | RGATCY | 1 cut(s) | 1382 |
| MlsI | TGGCCA | 1 cut(s) | 1068 |
| MluCI | AATT | 6 cut(s) | 528, 586, 679, 701, 1202, 1571 |
| MluNI | TGGCCA | 1 cut(s) | 1068 |
| MlyI | GAGTC | 5 cut(s) | 400, 436, 485, 497, 622 |
| MmeI | TCCRAC | 1 cut(s) | 69 |
| Mox20I | TGGCCA | 1 cut(s) | 1068 |
| Mph1103I | ATGCAT | 2 cut(s) | 1262, 1501 |
| MroNI | GCCGGC | 2 cut(s) | 259, 343 |
| MroXI | GAANNNNTTC | 1 cut(s) | 940 |
| MscI | TGGCCA | 1 cut(s) | 1068 |
| MseI | TTAA | 4 cut(s) | 654, 990, 1269, 1292 |
| MslI | CAYNNNNRTG | 3 cut(s) | 507, 1230, 1520 |
| Msp20I | TGGCCA | 1 cut(s) | 1068 |
| MspA1I | CMGCKG | 1 cut(s) | 1493 |
| MspR9I | CCNGG | 2 cut(s) | 852, 1473 |
| Mva1269I | GAATGC | 1 cut(s) | 520 |
| MvaI | CCWGG | 2 cut(s) | 852, 1473 |
| MvnI | CGCG | 2 cut(s) | 1020, 1360 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 760, 1340, 1496 |
| NaeI | GCCGGC | 2 cut(s) | 261, 345 |
| NdeI | CATATG | 1 cut(s) | 1501 |
| NdeII | GATC | 2 cut(s) | 1222, 1382 |
| NgoMIV | GCCGGC | 2 cut(s) | 259, 343 |
| NlaIII | CATG | 7 cut(s) | 506, 569, 842, 1235, 1264, 1426, 1460 |
| NlaIV | GGNNCC | 3 cut(s) | 856, 1285, 1454 |
| NmeAIII | GCCGAG | 2 cut(s) | 895, 1432 |
| NmuCI | GTSAC | 7 cut(s) | 124, 169, 214, 250, 298, 334, 415 |
| NsiI | ATGCAT | 2 cut(s) | 1262, 1501 |
| NspI | RCATGY | 2 cut(s) | 1264, 1426 |
| PaeI | GCATGC | 1 cut(s) | 1264 |
| PagI | TCATGA | 1 cut(s) | 1231 |
| PceI | AGGCCT | 1 cut(s) | 1603 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 576 |
| PctI | GAATGC | 1 cut(s) | 520 |
| PdiI | GCCGGC | 2 cut(s) | 261, 345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 940 |
| PfeI | GAWTC | 8 cut(s) | 115, 160, 205, 241, 289, 325, 373, 1186 |
| PflFI | GACNNNGTC | 1 cut(s) | 40 |
| PkrI | GCNGC | 4 cut(s) | 349, 889, 1342, 1492 |
| PleI | GAGTC | 5 cut(s) | 400, 436, 484, 496, 622 |
| PmaCI | CACGTG | 1 cut(s) | 1182 |
| PmlI | CACGTG | 1 cut(s) | 1182 |
| PpsI | GAGTC | 5 cut(s) | 400, 436, 484, 496, 622 |
| Ppu21I | YACGTR | 1 cut(s) | 1182 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| PsiI | TTATAA | 1 cut(s) | 1379 |
| Psp6I | CCWGG | 2 cut(s) | 850, 1471 |
| PspCI | CACGTG | 1 cut(s) | 1182 |
| PspEI | GGTNACC | 3 cut(s) | 124, 169, 214 |
| PspGI | CCWGG | 2 cut(s) | 850, 1471 |
| PspN4I | GGNNCC | 3 cut(s) | 856, 1285, 1454 |
| PspPI | GGNCC | 3 cut(s) | 817, 835, 1452 |
| PstI | CTGCAG | 2 cut(s) | 892, 1609 |
| PstNI | CAGNNNCTG | 1 cut(s) | 524 |
| PsuI | RGATCY | 1 cut(s) | 1382 |
| PsyI | GACNNNGTC | 1 cut(s) | 40 |
| PvuII | CAGCTG | 1 cut(s) | 1493 |
| RsaI | GTAC | 2 cut(s) | 1084, 1461 |
| RsaNI | GTAC | 2 cut(s) | 1083, 1460 |
| RseI | CAYNNNNRTG | 3 cut(s) | 507, 1230, 1520 |
| SaqAI | TTAA | 4 cut(s) | 654, 990, 1269, 1292 |
| SatI | GCNGC | 4 cut(s) | 348, 888, 1341, 1491 |
| Sau3AI | GATC | 2 cut(s) | 1222, 1382 |
| Sau96I | GGNCC | 3 cut(s) | 817, 835, 1452 |
| SchI | GAGTC | 5 cut(s) | 400, 436, 485, 497, 622 |
| ScrFI | CCNGG | 2 cut(s) | 852, 1473 |
| SfaNI | GCATC | 4 cut(s) | 741, 886, 1486, 1593 |
| SfcI | CTRYAG | 2 cut(s) | 888, 1605 |
| SinI | GGWCC | 2 cut(s) | 835, 1452 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 507, 1230, 1520 |
| SmlI | CTYRAG | 1 cut(s) | 961 |
| SmoI | CTYRAG | 1 cut(s) | 961 |
| SphI | GCATGC | 1 cut(s) | 1264 |
| Sse9I | AATT | 6 cut(s) | 528, 586, 679, 701, 1202, 1571 |
| SseBI | AGGCCT | 1 cut(s) | 1603 |
| SspI | AATATT | 1 cut(s) | 1509 |
| SspMI | CTAG | 3 cut(s) | 663, 776, 807 |
| StuI | AGGCCT | 1 cut(s) | 1603 |
| StyD4I | CCNGG | 2 cut(s) | 850, 1471 |
| StyI | CCWWGG | 2 cut(s) | 769, 1238 |
| TaaI | ACNGT | 4 cut(s) | 70, 458, 847, 859 |
| TaiI | ACGT | 2 cut(s) | 44, 1184 |
| TasI | AATT | 6 cut(s) | 528, 586, 679, 701, 1202, 1571 |
| TatI | WGTACW | 1 cut(s) | 1082 |
| TauI | GCSGC | 1 cut(s) | 350 |
| TfiI | GAWTC | 8 cut(s) | 115, 160, 205, 241, 289, 325, 373, 1186 |
| Tru1I | TTAA | 4 cut(s) | 654, 990, 1269, 1292 |
| Tru9I | TTAA | 4 cut(s) | 654, 990, 1269, 1292 |
| TscAI | CASTG | 2 cut(s) | 850, 1522 |
| TseFI | GTSAC | 7 cut(s) | 124, 169, 214, 250, 298, 334, 415 |
| TseI | GCWGC | 3 cut(s) | 887, 1340, 1490 |
| Tsp45I | GTSAC | 7 cut(s) | 124, 169, 214, 250, 298, 334, 415 |
| TspDTI | ATGAA | 1 cut(s) | 924 |
| TspGWI | ACGGA | 1 cut(s) | 941 |
| TspRI | CASTG | 2 cut(s) | 850, 1522 |
| Tth111I | GACNNNGTC | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 2 cut(s) | 835, 1452 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XapI | RAATTY | 3 cut(s) | 679, 1202, 1571 |
| XbaI | TCTAGA | 1 cut(s) | 775 |
| XceI | RCATGY | 2 cut(s) | 1264, 1426 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 136, 181, 226, 1179 |
| XmiI | GTMKAC | 1 cut(s) | 1393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 940 |
| XspI | CTAG | 3 cut(s) | 663, 776, 807 |
| Zsp2I | ATGCAT | 2 cut(s) | 1262, 1501 |