Rorug03G0293300
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007267
Physical Location & Seq
Forward (+)
30046596 .. 30047307
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0293300.1

Sequence Viewer

Length: 267 bp
ATGCTGCGTCCGGGGCGAATGGACATGCACATTAACATGTCCTATTGCACTGTAGGGGGTTTTAACATATTGGCCTCGAACTATCTTGGCATTCATCACAGCAACCGTCACAGGCTTTGTGGTGGAATTGAAGGACTAATTGAGAGTAGTGAGGTCACTCCTGCAGAGGTTGCTGAGGAGCTAATGAGGATCGATAATGCTGATGTTGCTCTTGAAGGACTAGTGAGTTTGCACAAGGGAAAGAATAATGCTGATGATTTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

5.37

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_At3g28540 PF25568 16 - 80 2.4e-18 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 131, 215
AhlI ACTAGT 1 cut(s) 220
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 174
BcnI CCSGG 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 2 cut(s) 51, 162
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 192
BsiSI CCGG 1 cut(s) 11
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 52, 107
BstAPI GCANNNNNTGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 3 cut(s) 13, 170, 206
BstNSI RCATGY 2 cut(s) 28, 40
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 2 cut(s) 51, 162
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 192
CviAII CATG 2 cut(s) 25, 37
CviJI RGCY 3 cut(s) 74, 115, 181
CviKI_1 RGCY 3 cut(s) 74, 115, 181
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
FaeI CATG 2 cut(s) 28, 40
FaiI YATR 3 cut(s) 26, 38, 68
FatI CATG 2 cut(s) 24, 36
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 28, 40
HpaII CCGG 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 125, 209
HpyCH4III ACNGT 2 cut(s) 52, 107
HpyCH4V TGCA 4 cut(s) 28, 48, 164, 232
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 170, 206
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 28, 40
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 24, 97, 174
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 107, 154
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MluCI AATT 2 cut(s) 126, 138
MnlI CCTC 5 cut(s) 85, 145, 160, 169, 180
MseI TTAA 2 cut(s) 33, 63
MslI CAYNNNNRTG 1 cut(s) 35
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 13, 170, 206
NciI CCSGG 1 cut(s) 12
NdeII GATC 1 cut(s) 189
NlaIII CATG 2 cut(s) 28, 40
NmuCI GTSAC 2 cut(s) 107, 154
NspI RCATGY 2 cut(s) 28, 40
PciI ACATGT 1 cut(s) 36
PctI GAATGC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 6
PscI ACATGT 1 cut(s) 36
PstI CTGCAG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 33, 63
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 12
SetI ASST 3 cut(s) 156, 171, 183
SfcI CTRYAG 2 cut(s) 51, 162
SmiMI CAYNNNNRTG 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 2 cut(s) 126, 138
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 52, 107
TaqI TCGA 2 cut(s) 77, 192
TasI AATT 2 cut(s) 126, 138
Tru1I TTAA 2 cut(s) 33, 63
Tru9I TTAA 2 cut(s) 33, 63
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 107, 154
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 107, 154
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 55
XceI RCATGY 2 cut(s) 28, 40
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.