Rh3AG337000
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
49206013 .. 49210220
4208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG337000.1

Sequence Viewer

Length: 1320 bp
ATGGGAGAGGTGGCGGTGGCGGTGGCGGTGGCTGAGACCACGTCCAACAGGAGGAGGAGCAGAAAAACTGTCGGGCAGAAGCCAAAGCCGGTGGTGGTGTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGACCAAGCCGGTGGTGGATTTCCAGAATCAGCCGGTGACTAAGCCGGCGGTGGTGGTTTCTCGCTATTTCCAGAATCAGCCTGTGACCAAGCCGGTGGCTGATTTCCAGAATCAGCCGGTGACTAAGCCGGCGGCGGTGGTTTCTCGCTATTTCCAGAATCAGCCGGTGGTGGTTTCTCGCTATTTCCAGACTCAGCCGGTGACTAAGGCGGTGGTGGAAATAGGGACTCAACCAGAAAACGGTAAGATAACCTCCTCCGAGTCAAAGTCAGAGTCAATGTCAGACCATGTGAATGTGAATGCAGTTACTGAAATTAGAAGCAAGAAAGAAAAGAGAAAGAGGAGACGCCATGACGCTGACAACGATGGCAATTCTAAAATGACAAAGAAGAAGAAGAAGAAGAAGAAGAAGACTCTTCAAGTAGAGGAGGCAGATATTAATCAAACTAGGAGCGCCATCTTGAATTTTGAGGATATGCTTTCTCAATTTGCTTACGAGGGTTGTGGTGTTGAATGGAATAATAAACATAACAAGATGCCCAAAACGCTTTCCCAAGGTCTAGATACTACTATCTATCCTTGTAGTCAAGCTAGTAAGACGGGCCGGAACTCAACTGAGGACCATGCCACTGTGCCTGGAACCGTGAAACAAGCCCAAGTGCATCCACAGGCTGCAGAGAGGAGGAGGAAGAATGAAACTCGGCCATCCACGGAAATCCGAAAGGTTTCTCATTACTTCCAAACCTCAAGTAATGAGTGCAAGGATACAAATGTTAAACCCCCTAAACGCCATTCAAAATCTCGCGGGGAGACCTTTCAGAAGGAGGCCACCAAAAAAAATAATGCAGATGGCCACTTGTTGCAAAGTACAAACAGGCTCAGGAAGAAATCTCCTAAAAACAGGGCTACTCTTACCGCTTCACAGAGGAAGGACGAAGCATACCGAAGGAAAACTCCAGATAACACGTGGATTCCTCCTCGCTCTGAATTTGGTCTCCTCCAAGAAGATCACTATCATGACCCTTGGAGAGTGTTGGTTATATGCATGCTCCTTAATCGGACAACAGGAACCCAGGTCTCTATTCCTTATACTTTTACTGCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

49.98

Weight (kDa)

10.16

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1020
AciI CCGC 9 cut(s) 14, 20, 26, 263, 347, 350, 425, 1020, 1131
AcoI YGGCCR 2 cut(s) 917, 1066
AcsI RAATTY 2 cut(s) 679, 1202
AcvI CACGTG 1 cut(s) 1182
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 1 cut(s) 1084
AfiI CCNNNNNNNGG 2 cut(s) 51, 455
AflIII ACRYGT 1 cut(s) 1179
AgsI TTSAA 4 cut(s) 635, 679, 728, 1011
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 850, 1287
AluBI AGCT 1 cut(s) 806
AluI AGCT 1 cut(s) 806
Alw26I GTCTC 6 cut(s) 29, 105, 553, 1019, 1214, 1297
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 4 cut(s) 817, 917, 1041, 1066
ApeKI GCWGC 1 cut(s) 887
ApoI RAATTY 2 cut(s) 679, 1202
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AseI ATTAAT 1 cut(s) 654
Asp700I GAANNNNTTC 1 cut(s) 940
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 2 cut(s) 817, 835
AsuHPI GGTGA 6 cut(s) 136, 181, 226, 262, 346, 427
AvaII GGWCC 1 cut(s) 835
BaeI ACNNNNGTAYC 2 cut(s) 972, 1005
BalI TGGCCA 1 cut(s) 1068
BbrPI CACGTG 1 cut(s) 1182
BbsI GAAGAC 1 cut(s) 632
BbvI GCAGC 1 cut(s) 874
BccI CCATC 4 cut(s) 575, 680, 928, 1058
BciT130I CCWGG 2 cut(s) 852, 1289
BciVI GTATCC 1 cut(s) 973
BcoDI GTCTC 6 cut(s) 29, 105, 553, 1019, 1214, 1297
BfaI CTAG 3 cut(s) 663, 776, 807
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 672
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 2 cut(s) 348, 888
BlsI GCNGC 2 cut(s) 349, 889
Bme1390I CCNGG 2 cut(s) 852, 1289
Bme18I GGWCC 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 817, 835
BmiI GGNNCC 2 cut(s) 856, 1285
BmrFI CCNGG 2 cut(s) 852, 1289
BmsI GCATC 2 cut(s) 741, 886
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 1155
Bpu10I CCTNAGC 1 cut(s) 1094
BpuEI CTTGAG 1 cut(s) 946
BsaAI YACGTR 1 cut(s) 1182
BsaBI GATNNNNATC 2 cut(s) 654, 1227
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 4 cut(s) 29, 1019, 1214, 1297
BsaJI CCNNGG 4 cut(s) 769, 924, 1238, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 455
Bse8I GATNNNNATC 2 cut(s) 654, 1227
BseBI CCWGG 2 cut(s) 852, 1289
BseDI CCNNGG 4 cut(s) 769, 924, 1238, 1287
BseGI GGATG 2 cut(s) 877, 920
BseJI GATNNNNATC 2 cut(s) 654, 1227
BseLI CCNNNNNNNGG 2 cut(s) 51, 455
BseMII CTCAG 4 cut(s) 24, 422, 822, 1108
BseRI GAGGAG 9 cut(s) 67, 70, 460, 571, 656, 910, 913, 1182, 1202
BseXI GCAGC 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 4 cut(s) 819, 919, 1043, 1068
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 51, 455
BsmAI GTCTC 6 cut(s) 29, 105, 553, 1019, 1214, 1297
BsmBI CGTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 4 cut(s) 819, 919, 1043, 1068
Bso31I GGTCTC 4 cut(s) 29, 1019, 1214, 1297
Bsp143I GATC 1 cut(s) 1222
BspACI CCGC 9 cut(s) 14, 20, 26, 263, 347, 350, 425, 1020, 1131
BspANI GGCC 4 cut(s) 819, 919, 1043, 1068
BspCNI CTCAG 4 cut(s) 25, 421, 823, 1107
BspFNI CGCG 1 cut(s) 1020
BspHI TCATGA 1 cut(s) 1231
BspLI GGNNCC 2 cut(s) 856, 1285
BspMAI CTGCAG 1 cut(s) 892
BspTNI GGTCTC 4 cut(s) 29, 1019, 1214, 1297
BssECI CCNNGG 4 cut(s) 769, 924, 1238, 1287
BssMI GATC 1 cut(s) 1222
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 769, 1238
Bst2UI CCWGG 2 cut(s) 852, 1289
Bst4CI ACNGT 4 cut(s) 70, 458, 847, 859
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 1182
BstC8I GCNNGC 3 cut(s) 261, 345, 1262
BstDEI CTNAG 7 cut(s) 33, 255, 339, 408, 420, 831, 1094
BstDSI CCRYGG 1 cut(s) 924
BstEII GGTNACC 3 cut(s) 124, 169, 214
BstF5I GGATG 2 cut(s) 877, 920
BstFNI CGCG 1 cut(s) 1020
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 1 cut(s) 1225
BstMAI GTCTC 6 cut(s) 29, 105, 553, 1019, 1214, 1297
BstMBI GATC 1 cut(s) 1222
BstMWI GCNNNNNNNGC 1 cut(s) 760
BstNI CCWGG 2 cut(s) 852, 1289
BstNSI RCATGY 1 cut(s) 1264
BstPI GGTNACC 3 cut(s) 124, 169, 214
BstSCI CCNGG 2 cut(s) 850, 1287
BstSFI CTRYAG 1 cut(s) 888
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 1 cut(s) 874
BstV2I GAAGAC 1 cut(s) 632
BstXI CCANNNNNNTGG 4 cut(s) 136, 181, 226, 310
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 4 cut(s) 819, 919, 1043, 1068
BtgI CCRYGG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 2 cut(s) 877, 920
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 3 cut(s) 261, 345, 1262
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 1 cut(s) 1231
CfoI GCGC 1 cut(s) 671
Cfr13I GGNCC 2 cut(s) 817, 835
CseI GACGC 2 cut(s) 570, 578
Csp6I GTAC 1 cut(s) 1083
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 5 cut(s) 503, 566, 839, 1232, 1261
CviQI GTAC 1 cut(s) 1083
DdeI CTNAG 7 cut(s) 33, 255, 339, 408, 420, 831, 1094
DpnI GATC 1 cut(s) 1224
DpnII GATC 1 cut(s) 1222
EaeI YGGCCR 2 cut(s) 917, 1066
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 769, 1238
Eco31I GGTCTC 4 cut(s) 29, 1019, 1214, 1297
Eco47I GGWCC 1 cut(s) 835
Eco72I CACGTG 1 cut(s) 1182
Eco91I GGTNACC 3 cut(s) 124, 169, 214
EcoO65I GGTNACC 3 cut(s) 124, 169, 214
EcoRII CCWGG 2 cut(s) 850, 1287
EcoT14I CCWWGG 2 cut(s) 769, 1238
EcoT22I ATGCAT 1 cut(s) 1262
ErhI CCWWGG 2 cut(s) 769, 1238
Esp3I CGTCTC 1 cut(s) 553
FaeI CATG 5 cut(s) 506, 569, 842, 1235, 1264
FaqI GGGAC 1 cut(s) 454
FatI CATG 5 cut(s) 502, 565, 838, 1231, 1260
FauI CCCGC 1 cut(s) 1013
Fnu4HI GCNGC 2 cut(s) 348, 888
FokI GGATG 2 cut(s) 864, 907
Fsp4HI GCNGC 2 cut(s) 348, 888
FspBI CTAG 3 cut(s) 663, 776, 807
GlaI GCGC 1 cut(s) 670
GluI GCNGC 2 cut(s) 348, 888
GsuI CTGGAG 1 cut(s) 1155
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 4 cut(s) 819, 919, 1043, 1068
HgaI GACGC 2 cut(s) 570, 578
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 5 cut(s) 506, 569, 842, 1235, 1264
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HphI GGTGA 6 cut(s) 136, 181, 226, 262, 346, 427
Hpy188I TCNGA 7 cut(s) 475, 487, 499, 935, 1035, 1201, 1275
HpyAV CCTTC 3 cut(s) 1030, 1138, 1155
HpyCH4III ACNGT 4 cut(s) 70, 458, 847, 859
HpyCH4IV ACGT 2 cut(s) 41, 1181
HpyCH4V TGCA 7 cut(s) 518, 877, 890, 975, 1061, 1078, 1260
HpyF10VI GCNNNNNNNGC 1 cut(s) 760
HpyF3I CTNAG 7 cut(s) 33, 255, 339, 408, 420, 831, 1094
HpySE526I ACGT 2 cut(s) 41, 1181
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 5 cut(s) 506, 569, 842, 1235, 1264
HspAI GCGC 1 cut(s) 669
KroI GCCGGC 2 cut(s) 259, 343
KroNI GCCGGC 2 cut(s) 261, 345
Kzo9I GATC 1 cut(s) 1222
LmnI GCTCC 3 cut(s) 57, 666, 1269
Lsp1109I GCAGC 1 cut(s) 874
LweI GCATC 2 cut(s) 741, 886
MaeI CTAG 3 cut(s) 663, 776, 807
MaeII ACGT 2 cut(s) 41, 1181
MaeIII GTNAC 8 cut(s) 124, 169, 214, 250, 298, 334, 415, 520
MalI GATC 1 cut(s) 1224
MboI GATC 1 cut(s) 1222
MlsI TGGCCA 1 cut(s) 1068
MluCI AATT 5 cut(s) 528, 586, 679, 701, 1202
MluNI TGGCCA 1 cut(s) 1068
MlyI GAGTC 5 cut(s) 400, 436, 485, 497, 622
MmeI TCCRAC 1 cut(s) 69
Mox20I TGGCCA 1 cut(s) 1068
Mph1103I ATGCAT 1 cut(s) 1262
MroNI GCCGGC 2 cut(s) 259, 343
MroXI GAANNNNTTC 1 cut(s) 940
MscI TGGCCA 1 cut(s) 1068
MseI TTAA 3 cut(s) 654, 990, 1269
MslI CAYNNNNRTG 2 cut(s) 507, 1230
Msp20I TGGCCA 1 cut(s) 1068
MspR9I CCNGG 2 cut(s) 852, 1289
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 2 cut(s) 852, 1289
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 1 cut(s) 760
NaeI GCCGGC 2 cut(s) 261, 345
NdeII GATC 1 cut(s) 1222
NgoMIV GCCGGC 2 cut(s) 259, 343
NlaIII CATG 5 cut(s) 506, 569, 842, 1235, 1264
NlaIV GGNNCC 2 cut(s) 856, 1285
NmeAIII GCCGAG 1 cut(s) 895
NmuCI GTSAC 7 cut(s) 124, 169, 214, 250, 298, 334, 415
NsiI ATGCAT 1 cut(s) 1262
NspI RCATGY 1 cut(s) 1264
PaeI GCATGC 1 cut(s) 1264
PagI TCATGA 1 cut(s) 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PctI GAATGC 1 cut(s) 520
PdiI GCCGGC 2 cut(s) 261, 345
PdmI GAANNNNTTC 1 cut(s) 940
PfeI GAWTC 8 cut(s) 115, 160, 205, 241, 289, 325, 373, 1186
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 349, 889
PleI GAGTC 5 cut(s) 400, 436, 484, 496, 622
PmaCI CACGTG 1 cut(s) 1182
PmlI CACGTG 1 cut(s) 1182
PpsI GAGTC 5 cut(s) 400, 436, 484, 496, 622
Ppu21I YACGTR 1 cut(s) 1182
PshBI ATTAAT 1 cut(s) 654
Psp6I CCWGG 2 cut(s) 850, 1287
PspCI CACGTG 1 cut(s) 1182
PspEI GGTNACC 3 cut(s) 124, 169, 214
PspGI CCWGG 2 cut(s) 850, 1287
PspN4I GGNNCC 2 cut(s) 856, 1285
PspPI GGNCC 2 cut(s) 817, 835
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 524
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 1084
RsaNI GTAC 1 cut(s) 1083
RseI CAYNNNNRTG 2 cut(s) 507, 1230
SaqAI TTAA 3 cut(s) 654, 990, 1269
SatI GCNGC 2 cut(s) 348, 888
Sau3AI GATC 1 cut(s) 1222
Sau96I GGNCC 2 cut(s) 817, 835
SchI GAGTC 5 cut(s) 400, 436, 485, 497, 622
ScrFI CCNGG 2 cut(s) 852, 1289
SfaNI GCATC 2 cut(s) 741, 886
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 2 cut(s) 507, 1230
SmlI CTYRAG 1 cut(s) 961
SmoI CTYRAG 1 cut(s) 961
SphI GCATGC 1 cut(s) 1264
Sse9I AATT 5 cut(s) 528, 586, 679, 701, 1202
SsiI CCGC 9 cut(s) 14, 20, 26, 263, 347, 350, 425, 1020, 1131
SspMI CTAG 3 cut(s) 663, 776, 807
StyD4I CCNGG 2 cut(s) 850, 1287
StyI CCWWGG 2 cut(s) 769, 1238
TaaI ACNGT 4 cut(s) 70, 458, 847, 859
TaiI ACGT 2 cut(s) 44, 1184
TasI AATT 5 cut(s) 528, 586, 679, 701, 1202
TatI WGTACW 1 cut(s) 1082
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 8 cut(s) 115, 160, 205, 241, 289, 325, 373, 1186
Tru1I TTAA 3 cut(s) 654, 990, 1269
Tru9I TTAA 3 cut(s) 654, 990, 1269
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 7 cut(s) 124, 169, 214, 250, 298, 334, 415
TseI GCWGC 1 cut(s) 887
Tsp45I GTSAC 7 cut(s) 124, 169, 214, 250, 298, 334, 415
TspDTI ATGAA 1 cut(s) 924
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 1 cut(s) 850
Tth111I GACNNNGTC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 835
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 2 cut(s) 679, 1202
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 1 cut(s) 1264
XcmI CCANNNNNNNNNTGG 4 cut(s) 136, 181, 226, 1179
XmnI GAANNNNTTC 1 cut(s) 940
XspI CTAG 3 cut(s) 663, 776, 807
Zsp2I ATGCAT 1 cut(s) 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.