FvH4_1g27870
ERF Family

HhH-GPD superfamily base excision DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007267
Physical Location & Seq
Reverse (-)
19478763 .. 19483641
4879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27870.t5

Sequence Viewer

Length: 1233 bp
ATGTTTGATAAAAATAGGAATGTGGCGGTGATGAAAAAGCCGACGAAGCTGGCTGAGAGGAAGAGCAGAAGAAAAACTGACGGGCAGCAGCCGGTGGTGCGTTCTCCTCATTTCCGGAATCAGCCGGTGGTGGAAATAGGGACTCATCCAGAACACGGTAAGCTAATCTCCTCCGAGTCAGACCATGTGAATGTGCATGTAGCGTCTGAGATTAGAACCAGGAAAGAAAAGAGGAGGAGACGCCATGATGCTGGTGACAACGATGGCAATTGTGAGATGGCAAAGAAGAAGAAGATGGCCCAAGTAGAGGAGAAGCCAGATACTAGTATGCCCATCCTGAATCTTGACCATGTGTTCTCTCAATTTGCTTACAAGGGTGGTGCTGCTACTCTATGCAAATATAAACGCACCAAGATGCCCAGAAAGCCTTCCCAAATTATCTATCCTTGTAGTCAGACTGGCCGGAACTCAATTGAGGACCGTGCCACTATGCTTGCAGCCTTGGAACAAGAACAGAAAGGGAAAAAGAAGGAAACTCAGTCATCTGTGGGCATCCGAAAGGTTTCTCGTTACTTCCCAATTCCAACCTCAAGTGTGCAACCAGTGTTGGTAGATGAGTGCAAGAAAATTAAACTCTCCAAACGCCGTCATGGAAAAACCTTTCAGAAGGATGCCACTGAAGAAAATAATGCAGATGGCAATTTGTCGCAAATTAGGAAAAGGAGCAAGAGAAAATCTCCTGAAATCATGACAACTCTTAGTGCTTCCCAGAGGAGGGATGAAGCATACCGTAGGAGAACTCCAGATAACACCTGGATTCCTCCTCGCTCTGAAATTAAACTCCTCCAAGAAGATCACTATCATGACCCTTGGAGAGTATTGGTTATATGCATGCTTCTTAATCGGACACAAGGAAAGCAGTTAAAAGGAGTTATATCAAATTTCTTCAGTTTGTGTCCTACTGCGAAGGCTGCTACTGAGGTTGCCTTGCGGGATATAGAAGAGGTTATAAGATCTCTTGGTCTACACAAGAGAGCAGAGATGATACAGCGTATGTCTGAGGAGTATTTAGGTGAAAGTTGGACCCATGTACCTGAGTTGTATGGTGTTGGCAAGTATGCAGCTGATGCATATGCAATATTCTGTACTGGAATGTGGGAACAAGTGAAACCTACCGACCACAAGCTAAATGAATACTGGGAATTTCTCCACAGCATAAATAGAGTAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

411

Amino Acids

47.28

Weight (kDa)

9.79

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 1024
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 2 cut(s) 26, 991
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 2 cut(s) 940, 1202
AcuI CTGAAG 2 cut(s) 699, 931
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 2 cut(s) 1092, 1147
AfiI CCNNNNNNNGG 4 cut(s) 155, 307, 774, 775
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 2 cut(s) 218, 812
AluBI AGCT 5 cut(s) 49, 163, 1124, 1186, 1230
AluI AGCT 5 cut(s) 49, 163, 1124, 1186, 1230
Alw26I GTCTC 1 cut(s) 232
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 2 cut(s) 297, 460
ApeKI GCWGC 6 cut(s) 85, 88, 383, 497, 971, 1121
ApoI RAATTY 2 cut(s) 940, 1202
Asp700I GAANNNNTTC 2 cut(s) 427, 562
AspS9I GGNCC 3 cut(s) 298, 478, 1083
AsuHPI GGTGA 3 cut(s) 40, 266, 1085
AvaII GGWCC 2 cut(s) 478, 1083
BaeI ACNNNNGTAYC 2 cut(s) 1074, 1107
BbvI GCAGC 6 cut(s) 97, 100, 370, 509, 958, 1133
BccI CCATC 5 cut(s) 257, 271, 289, 341, 689
BceAI ACGGC 1 cut(s) 630
BciT130I CCWGG 2 cut(s) 220, 814
BcoDI GTCTC 1 cut(s) 232
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BglII AGATCT 1 cut(s) 1013
BisI GCNGC 6 cut(s) 86, 89, 384, 498, 972, 1122
BlsI GCNGC 6 cut(s) 87, 90, 385, 499, 973, 1123
Bme1390I CCNGG 2 cut(s) 220, 814
Bme18I GGWCC 2 cut(s) 478, 1083
BmgT120I GGNCC 3 cut(s) 298, 478, 1083
BmiI GGNNCC 1 cut(s) 1085
BmrFI CCNGG 2 cut(s) 220, 814
BmrI ACTGGG 1 cut(s) 1207
BmsI GCATC 5 cut(s) 238, 405, 561, 661, 1117
BmuI ACTGGG 1 cut(s) 1207
BplI GAGNNNNNCTC 2 cut(s) 721, 753
BpmI CTGGAG 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 574
BsaBI GATNNNNATC 1 cut(s) 858
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 501, 869
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 307, 774, 775
Bse118I RCCGGY 2 cut(s) 91, 124
Bse1I ACTGG 4 cut(s) 463, 602, 1153, 1202
Bse8I GATNNNNATC 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 2 cut(s) 220, 814
BseDI CCNNGG 2 cut(s) 501, 869
BseGI GGATG 5 cut(s) 145, 333, 552, 676, 784
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 4 cut(s) 155, 307, 774, 775
BseMII CTCAG 6 cut(s) 45, 198, 551, 969, 1050, 1086
BseNI ACTGG 4 cut(s) 463, 602, 1153, 1202
BseRI GAGGAG 9 cut(s) 96, 160, 247, 250, 323, 787, 813, 833, 1076
BseXI GCAGC 6 cut(s) 97, 100, 370, 509, 958, 1133
BshFI GGCC 2 cut(s) 299, 462
BsiSI CCGG 4 cut(s) 92, 115, 125, 463
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 4 cut(s) 155, 307, 774, 775
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 2 cut(s) 299, 462
Bsp13I TCCGGA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 853, 1013
BspACI CCGC 2 cut(s) 26, 991
BspANI GGCC 2 cut(s) 299, 462
BspCNI CTCAG 6 cut(s) 46, 199, 550, 970, 1051, 1087
BspEI TCCGGA 1 cut(s) 114
BspHI TCATGA 2 cut(s) 747, 862
BspLI GGNNCC 1 cut(s) 1085
BspQI GCTCTTC 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 91, 124
BsrI ACTGG 4 cut(s) 463, 602, 1153, 1202
BssAI RCCGGY 2 cut(s) 91, 124
BssECI CCNNGG 2 cut(s) 501, 869
BssMI GATC 2 cut(s) 853, 1013
BssNI GRCGYC 1 cut(s) 241
BssT1I CCWWGG 2 cut(s) 501, 869
Bst2UI CCWGG 2 cut(s) 220, 814
Bst4CI ACNGT 3 cut(s) 158, 482, 791
Bst6I CTCTTC 2 cut(s) 56, 996
BstACI GRCGYC 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 1127
BstC8I GCNNGC 3 cut(s) 51, 495, 893
BstDEI CTNAG 7 cut(s) 54, 207, 537, 758, 978, 1059, 1095
BstF5I GGATG 5 cut(s) 145, 333, 552, 676, 784
BstKTI GATC 2 cut(s) 856, 1016
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 853, 1013
BstMWI GCNNNNNNNGC 5 cut(s) 46, 97, 424, 971, 1127
BstNI CCWGG 2 cut(s) 220, 814
BstNSI RCATGY 2 cut(s) 200, 895
BstSCI CCNGG 2 cut(s) 218, 812
BstV1I GCAGC 6 cut(s) 97, 100, 370, 509, 958, 1133
BstX2I RGATCY 1 cut(s) 1013
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 1013
BsuRI GGCC 2 cut(s) 299, 462
BtsCI GGATG 5 cut(s) 145, 333, 552, 676, 784
BtsIMutI CAGTG 2 cut(s) 609, 675
Cac8I GCNNGC 3 cut(s) 51, 495, 893
CciI TCATGA 2 cut(s) 747, 862
Cfr10I RCCGGY 2 cut(s) 91, 124
Cfr13I GGNCC 3 cut(s) 298, 478, 1083
CseI GACGC 2 cut(s) 192, 249
Csp6I GTAC 2 cut(s) 1091, 1146
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 9 cut(s) 185, 197, 245, 350, 650, 748, 863, 892, 1088
CviQI GTAC 2 cut(s) 1091, 1146
DdeI CTNAG 7 cut(s) 54, 207, 537, 758, 978, 1059, 1095
DpnI GATC 2 cut(s) 855, 1015
DpnII GATC 2 cut(s) 853, 1013
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 56, 996
EarI CTCTTC 2 cut(s) 56, 996
Eco130I CCWWGG 2 cut(s) 501, 869
Eco47I GGWCC 2 cut(s) 478, 1083
Eco57I CTGAAG 2 cut(s) 699, 931
EcoRII CCWGG 2 cut(s) 218, 812
EcoT14I CCWWGG 2 cut(s) 501, 869
EcoT22I ATGCAT 2 cut(s) 893, 1132
ErhI CCWWGG 2 cut(s) 501, 869
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 9 cut(s) 188, 200, 248, 353, 653, 751, 866, 895, 1091
FaqI GGGAC 1 cut(s) 154
FatI CATG 9 cut(s) 184, 196, 244, 349, 649, 747, 862, 891, 1087
FauI CCCGC 1 cut(s) 984
FauNDI CATATG 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 1024
Fnu4HI GCNGC 6 cut(s) 86, 89, 384, 498, 972, 1122
FokI GGATG 5 cut(s) 132, 320, 539, 683, 791
Fsp4HI GCNGC 6 cut(s) 86, 89, 384, 498, 972, 1122
FspBI CTAG 1 cut(s) 324
GluI GCNGC 6 cut(s) 86, 89, 384, 498, 972, 1122
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 2 cut(s) 299, 462
HapII CCGG 4 cut(s) 92, 115, 125, 463
HgaI GACGC 2 cut(s) 192, 249
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 9 cut(s) 188, 200, 248, 353, 653, 751, 866, 895, 1091
HinfI GANTC 5 cut(s) 118, 142, 176, 340, 817
HpaII CCGG 4 cut(s) 92, 115, 125, 463
HphI GGTGA 3 cut(s) 40, 266, 1085
Hpy166II GTNNAC 1 cut(s) 1025
Hpy188I TCNGA 9 cut(s) 175, 181, 208, 456, 557, 666, 832, 906, 1060
Hpy188III TCNNGA 8 cut(s) 115, 149, 337, 344, 740, 748, 803, 863
Hpy8I GTNNAC 1 cut(s) 1025
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 438, 523, 661, 961
HpyCH4III ACNGT 3 cut(s) 158, 482, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 97, 424, 971, 1127
HpyF3I CTNAG 7 cut(s) 54, 207, 537, 758, 978, 1059, 1095
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 9 cut(s) 188, 200, 248, 353, 653, 751, 866, 895, 1091
Kpn2I TCCGGA 1 cut(s) 114
Kzo9I GATC 2 cut(s) 853, 1013
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 723
Lsp1109I GCAGC 6 cut(s) 97, 100, 370, 509, 958, 1133
LweI GCATC 5 cut(s) 238, 405, 561, 661, 1117
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 254, 569
MalI GATC 2 cut(s) 855, 1015
MboI GATC 2 cut(s) 853, 1013
MboII GAAGA 9 cut(s) 73, 81, 298, 301, 304, 692, 863, 937, 1013
MfeI CAATTG 2 cut(s) 268, 471
MflI RGATCY 1 cut(s) 1013
MlyI GAGTC 2 cut(s) 136, 185
MmeI TCCRAC 2 cut(s) 608, 1061
Mph1103I ATGCAT 2 cut(s) 893, 1132
MroI TCCGGA 1 cut(s) 114
MroXI GAANNNNTTC 2 cut(s) 427, 562
MseI TTAA 4 cut(s) 630, 837, 900, 923
MslI CAYNNNNRTG 3 cut(s) 189, 413, 861
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 4 cut(s) 92, 115, 125, 463
MspR9I CCNGG 2 cut(s) 220, 814
MunI CAATTG 2 cut(s) 268, 471
MvaI CCWGG 2 cut(s) 220, 814
MwoI GCNNNNNNNGC 5 cut(s) 46, 97, 424, 971, 1127
NdeI CATATG 1 cut(s) 1132
NdeII GATC 2 cut(s) 853, 1013
NlaIII CATG 9 cut(s) 188, 200, 248, 353, 653, 751, 866, 895, 1091
NlaIV GGNNCC 1 cut(s) 1085
NmuCI GTSAC 1 cut(s) 254
NsiI ATGCAT 2 cut(s) 893, 1132
NspI RCATGY 2 cut(s) 200, 895
PaeI GCATGC 1 cut(s) 895
PagI TCATGA 2 cut(s) 747, 862
PciSI GCTCTTC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 427, 562
PfeI GAWTC 3 cut(s) 118, 340, 817
PkrI GCNGC 6 cut(s) 87, 90, 385, 499, 973, 1123
PleI GAGTC 2 cut(s) 136, 184
PpsI GAGTC 2 cut(s) 136, 184
PsiI TTATAA 1 cut(s) 1010
Psp6I CCWGG 2 cut(s) 218, 812
PspGI CCWGG 2 cut(s) 218, 812
PspN4I GGNNCC 1 cut(s) 1085
PspPI GGNCC 3 cut(s) 298, 478, 1083
PsuI RGATCY 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 2 cut(s) 1092, 1147
RsaNI GTAC 2 cut(s) 1091, 1146
RseI CAYNNNNRTG 3 cut(s) 189, 413, 861
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 4 cut(s) 630, 837, 900, 923
SatI GCNGC 6 cut(s) 86, 89, 384, 498, 972, 1122
Sau3AI GATC 2 cut(s) 853, 1013
Sau96I GGNCC 3 cut(s) 298, 478, 1083
SchI GAGTC 2 cut(s) 136, 185
ScrFI CCNGG 2 cut(s) 220, 814
SfaNI GCATC 5 cut(s) 238, 405, 561, 661, 1117
SinI GGWCC 2 cut(s) 478, 1083
SmiMI CAYNNNNRTG 3 cut(s) 189, 413, 861
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SpeI ACTAGT 1 cut(s) 323
SphI GCATGC 1 cut(s) 895
SsiI CCGC 2 cut(s) 26, 991
SspI AATATT 1 cut(s) 1140
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 218, 812
StyI CCWWGG 2 cut(s) 501, 869
TaaI ACNGT 3 cut(s) 158, 482, 791
TatI WGTACW 1 cut(s) 1145
TfiI GAWTC 3 cut(s) 118, 340, 817
Tru1I TTAA 4 cut(s) 630, 837, 900, 923
Tru9I TTAA 4 cut(s) 630, 837, 900, 923
TscAI CASTG 2 cut(s) 609, 682
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 6 cut(s) 85, 88, 383, 497, 971, 1121
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 3 cut(s) 47, 795, 1206
TspRI CASTG 2 cut(s) 609, 682
VpaK11BI GGWCC 2 cut(s) 478, 1083
XapI RAATTY 2 cut(s) 940, 1202
XceI RCATGY 2 cut(s) 200, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 1024
XmnI GAANNNNTTC 2 cut(s) 427, 562
XspI CTAG 1 cut(s) 324
Zsp2I ATGCAT 2 cut(s) 893, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.