HhH-GPD superfamily base excision DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07930 AT3G07930 AT3G07930 AT3G07930 |
| fragaria_vesca | FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 FvH4_1g27870 |
| malus_domestica | MD00G1164900.v1.1 |
| prunus_persica | Prupe.4G286600_v2.0.a1 |
| pyrus_communis | pycom520g01030 pycom520g01040 |
| rosa_chinensis | RchiOBHm_Chr3g0497491 |
| rosa_laevigata | RLG00000022456 |
| rosa_multiflora | Rmu_sc0000440.1_g000010 Rmu_sc0009087.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00387970 |
| rosa_rugosa | Rorug03G0293200 Rorug03G0293300 |
| rosa_samantha | Rh3AG337000 Rh3BG375200 Rh3CG371200 Rh3DG371900 |
| rosa_wichuraiana | Rw0G018500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1131 |
| AcoI | YGGCCR | 2 cut(s) | 1028, 1177 |
| AcsI | RAATTY | 2 cut(s) | 790, 1313 |
| AcvI | CACGTG | 1 cut(s) | 1293 |
| AcyI | GRCGYC | 1 cut(s) | 670 |
| AfaI | GTAC | 2 cut(s) | 821, 1195 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 81, 575 |
| AflIII | ACRYGT | 1 cut(s) | 1290 |
| AgsI | TTSAA | 4 cut(s) | 749, 790, 839, 1122 |
| AjiI | CACGTC | 1 cut(s) | 72 |
| AjnI | CCWGG | 2 cut(s) | 961, 1398 |
| AluBI | AGCT | 2 cut(s) | 917, 1204 |
| AluI | AGCT | 2 cut(s) | 917, 1204 |
| Alw26I | GTCTC | 6 cut(s) | 59, 135, 661, 1130, 1325, 1408 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 632 |
| AoxI | GGCC | 4 cut(s) | 928, 1028, 1152, 1177 |
| ApeKI | GCWGC | 1 cut(s) | 998 |
| ApoI | RAATTY | 2 cut(s) | 790, 1313 |
| AseI | ATTAAT | 1 cut(s) | 765 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1051 |
| AspLEI | GCGC | 1 cut(s) | 782 |
| AspS9I | GGNCC | 2 cut(s) | 928, 946 |
| AvaII | GGWCC | 1 cut(s) | 946 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1083, 1116 |
| BalI | TGGCCA | 1 cut(s) | 1179 |
| BbrPI | CACGTG | 1 cut(s) | 1293 |
| BbvI | GCAGC | 1 cut(s) | 985 |
| BccI | CCATC | 4 cut(s) | 692, 791, 1039, 1169 |
| BciT130I | CCWGG | 2 cut(s) | 963, 1400 |
| BciVI | GTATCC | 1 cut(s) | 1084 |
| BcoDI | GTCTC | 6 cut(s) | 59, 135, 661, 1130, 1325, 1408 |
| BfaI | CTAG | 3 cut(s) | 774, 887, 918 |
| BfmI | CTRYAG | 1 cut(s) | 999 |
| BfoI | RGCGCY | 1 cut(s) | 783 |
| BfuI | GTATCC | 1 cut(s) | 1084 |
| BisI | GCNGC | 4 cut(s) | 288, 372, 456, 999 |
| BlsI | GCNGC | 4 cut(s) | 289, 373, 457, 1000 |
| Bme1390I | CCNGG | 2 cut(s) | 963, 1400 |
| Bme18I | GGWCC | 1 cut(s) | 946 |
| BmgBI | CACGTC | 1 cut(s) | 72 |
| BmgT120I | GGNCC | 2 cut(s) | 928, 946 |
| BmiI | GGNNCC | 2 cut(s) | 967, 1396 |
| BmrFI | CCNGG | 2 cut(s) | 963, 1400 |
| BmsI | GCATC | 2 cut(s) | 852, 997 |
| BpmI | CTGGAG | 1 cut(s) | 1266 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1205 |
| BpuEI | CTTGAG | 1 cut(s) | 1057 |
| BsaAI | YACGTR | 1 cut(s) | 1293 |
| BsaBI | GATNNNNATC | 2 cut(s) | 765, 1338 |
| BsaHI | GRCGYC | 1 cut(s) | 670 |
| BsaI | GGTCTC | 4 cut(s) | 59, 1130, 1325, 1408 |
| BsaJI | CCNNGG | 4 cut(s) | 880, 1035, 1349, 1398 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 81, 575 |
| Bse8I | GATNNNNATC | 2 cut(s) | 765, 1338 |
| BseBI | CCWGG | 2 cut(s) | 963, 1400 |
| BseDI | CCNNGG | 4 cut(s) | 880, 1035, 1349, 1398 |
| BseGI | GGATG | 2 cut(s) | 988, 1031 |
| BseJI | GATNNNNATC | 2 cut(s) | 765, 1338 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 81, 575 |
| BseMII | CTCAG | 4 cut(s) | 54, 542, 933, 1219 |
| BseRI | GAGGAG | 8 cut(s) | 97, 100, 580, 679, 1021, 1024, 1293, 1313 |
| BseXI | GCAGC | 1 cut(s) | 985 |
| Bsh1236I | CGCG | 1 cut(s) | 1131 |
| BshFI | GGCC | 4 cut(s) | 930, 1030, 1154, 1179 |
| BsiWI | CGTACG | 1 cut(s) | 819 |
| BslFI | GGGAC | 1 cut(s) | 574 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 81, 575 |
| BsmAI | GTCTC | 6 cut(s) | 59, 135, 661, 1130, 1325, 1408 |
| BsmBI | CGTCTC | 1 cut(s) | 661 |
| BsmFI | GGGAC | 1 cut(s) | 574 |
| BsmI | GAATGC | 1 cut(s) | 628 |
| BsnI | GGCC | 4 cut(s) | 930, 1030, 1154, 1179 |
| Bso31I | GGTCTC | 4 cut(s) | 59, 1130, 1325, 1408 |
| Bsp143I | GATC | 1 cut(s) | 1333 |
| BspANI | GGCC | 4 cut(s) | 930, 1030, 1154, 1179 |
| BspCNI | CTCAG | 4 cut(s) | 55, 541, 934, 1218 |
| BspFNI | CGCG | 1 cut(s) | 1131 |
| BspHI | TCATGA | 1 cut(s) | 1342 |
| BspLI | GGNNCC | 2 cut(s) | 967, 1396 |
| BspMAI | CTGCAG | 1 cut(s) | 1003 |
| BspTNI | GGTCTC | 4 cut(s) | 59, 1130, 1325, 1408 |
| BssECI | CCNNGG | 4 cut(s) | 880, 1035, 1349, 1398 |
| BssMI | GATC | 1 cut(s) | 1333 |
| BssNI | GRCGYC | 1 cut(s) | 670 |
| BssT1I | CCWWGG | 2 cut(s) | 880, 1349 |
| Bst2UI | CCWGG | 2 cut(s) | 963, 1400 |
| Bst4CI | ACNGT | 4 cut(s) | 100, 578, 958, 970 |
| Bst6I | CTCTTC | 2 cut(s) | 725, 734 |
| BstACI | GRCGYC | 1 cut(s) | 670 |
| BstBAI | YACGTR | 1 cut(s) | 1293 |
| BstC8I | GCNNGC | 5 cut(s) | 201, 285, 369, 453, 1373 |
| BstDEI | CTNAG | 8 cut(s) | 63, 195, 279, 363, 447, 528, 942, 1205 |
| BstDSI | CCRYGG | 1 cut(s) | 1035 |
| BstEII | GGTNACC | 3 cut(s) | 154, 238, 406 |
| BstF5I | GGATG | 2 cut(s) | 988, 1031 |
| BstFNI | CGCG | 1 cut(s) | 1131 |
| BstH2I | RGCGCY | 1 cut(s) | 783 |
| BstHHI | GCGC | 1 cut(s) | 782 |
| BstKTI | GATC | 1 cut(s) | 1336 |
| BstMAI | GTCTC | 6 cut(s) | 59, 135, 661, 1130, 1325, 1408 |
| BstMBI | GATC | 1 cut(s) | 1333 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 871 |
| BstNI | CCWGG | 2 cut(s) | 963, 1400 |
| BstNSI | RCATGY | 1 cut(s) | 1375 |
| BstPI | GGTNACC | 3 cut(s) | 154, 238, 406 |
| BstSCI | CCNGG | 2 cut(s) | 961, 1398 |
| BstSFI | CTRYAG | 1 cut(s) | 999 |
| BstUI | CGCG | 1 cut(s) | 1131 |
| BstV1I | GCAGC | 1 cut(s) | 985 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 166, 250, 334, 418 |
| BsuI | GTATCC | 1 cut(s) | 1084 |
| BsuRI | GGCC | 4 cut(s) | 930, 1030, 1154, 1179 |
| BtgI | CCRYGG | 1 cut(s) | 1035 |
| BtrI | CACGTC | 1 cut(s) | 72 |
| BtsCI | GGATG | 2 cut(s) | 988, 1031 |
| BtsIMutI | CAGTG | 1 cut(s) | 954 |
| Cac8I | GCNNGC | 5 cut(s) | 201, 285, 369, 453, 1373 |
| CaiI | CAGNNNCTG | 1 cut(s) | 632 |
| CciI | TCATGA | 1 cut(s) | 1342 |
| CfoI | GCGC | 1 cut(s) | 782 |
| Cfr13I | GGNCC | 2 cut(s) | 928, 946 |
| CseI | GACGC | 3 cut(s) | 678, 686, 692 |
| Csp6I | GTAC | 2 cut(s) | 820, 1194 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 102, 137, 483, 518 |
| CviAII | CATG | 5 cut(s) | 611, 674, 950, 1343, 1372 |
| CviQI | GTAC | 2 cut(s) | 820, 1194 |
| DdeI | CTNAG | 8 cut(s) | 63, 195, 279, 363, 447, 528, 942, 1205 |
| DpnI | GATC | 1 cut(s) | 1335 |
| DpnII | GATC | 1 cut(s) | 1333 |
| EaeI | YGGCCR | 2 cut(s) | 1028, 1177 |
| Eam1104I | CTCTTC | 2 cut(s) | 725, 734 |
| EarI | CTCTTC | 2 cut(s) | 725, 734 |
| Eco130I | CCWWGG | 2 cut(s) | 880, 1349 |
| Eco31I | GGTCTC | 4 cut(s) | 59, 1130, 1325, 1408 |
| Eco47I | GGWCC | 1 cut(s) | 946 |
| Eco72I | CACGTG | 1 cut(s) | 1293 |
| Eco91I | GGTNACC | 3 cut(s) | 154, 238, 406 |
| EcoO65I | GGTNACC | 3 cut(s) | 154, 238, 406 |
| EcoRII | CCWGG | 2 cut(s) | 961, 1398 |
| EcoT14I | CCWWGG | 2 cut(s) | 880, 1349 |
| EcoT22I | ATGCAT | 1 cut(s) | 1373 |
| ErhI | CCWWGG | 2 cut(s) | 880, 1349 |
| Esp3I | CGTCTC | 1 cut(s) | 661 |
| FaeI | CATG | 5 cut(s) | 614, 677, 953, 1346, 1375 |
| FaqI | GGGAC | 1 cut(s) | 574 |
| FatI | CATG | 5 cut(s) | 610, 673, 949, 1342, 1371 |
| FauI | CCCGC | 1 cut(s) | 1124 |
| FauNDI | CATATG | 1 cut(s) | 16 |
| Fnu4HI | GCNGC | 4 cut(s) | 288, 372, 456, 999 |
| FokI | GGATG | 2 cut(s) | 975, 1018 |
| Fsp4HI | GCNGC | 4 cut(s) | 288, 372, 456, 999 |
| FspBI | CTAG | 3 cut(s) | 774, 887, 918 |
| GlaI | GCGC | 1 cut(s) | 781 |
| GluI | GCNGC | 4 cut(s) | 288, 372, 456, 999 |
| GsuI | CTGGAG | 1 cut(s) | 1266 |
| HaeII | RGCGCY | 1 cut(s) | 783 |
| HaeIII | GGCC | 4 cut(s) | 930, 1030, 1154, 1179 |
| HgaI | GACGC | 3 cut(s) | 678, 686, 692 |
| HhaI | GCGC | 1 cut(s) | 782 |
| Hin1I | GRCGYC | 1 cut(s) | 670 |
| Hin1II | CATG | 5 cut(s) | 614, 677, 953, 1346, 1375 |
| Hin6I | GCGC | 1 cut(s) | 780 |
| HinP1I | GCGC | 1 cut(s) | 780 |
| Hpy188I | TCNGA | 6 cut(s) | 595, 607, 1046, 1146, 1312, 1386 |
| HpyAV | CCTTC | 3 cut(s) | 1141, 1249, 1266 |
| HpyCH4III | ACNGT | 4 cut(s) | 100, 578, 958, 970 |
| HpyCH4IV | ACGT | 2 cut(s) | 71, 1292 |
| HpyCH4V | TGCA | 7 cut(s) | 626, 988, 1001, 1086, 1172, 1189, 1371 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 871 |
| HpyF3I | CTNAG | 8 cut(s) | 63, 195, 279, 363, 447, 528, 942, 1205 |
| HpySE526I | ACGT | 2 cut(s) | 71, 1292 |
| Hsp92I | GRCGYC | 1 cut(s) | 670 |
| Hsp92II | CATG | 5 cut(s) | 614, 677, 953, 1346, 1375 |
| HspAI | GCGC | 1 cut(s) | 780 |
| KroI | GCCGGC | 4 cut(s) | 199, 283, 367, 451 |
| KroNI | GCCGGC | 4 cut(s) | 201, 285, 369, 453 |
| Kzo9I | GATC | 1 cut(s) | 1333 |
| LmnI | GCTCC | 2 cut(s) | 777, 1380 |
| Lsp1109I | GCAGC | 1 cut(s) | 985 |
| LweI | GCATC | 2 cut(s) | 852, 997 |
| MaeI | CTAG | 3 cut(s) | 774, 887, 918 |
| MaeII | ACGT | 2 cut(s) | 71, 1292 |
| MalI | GATC | 1 cut(s) | 1335 |
| MboI | GATC | 1 cut(s) | 1333 |
| MlsI | TGGCCA | 1 cut(s) | 1179 |
| MluCI | AATT | 5 cut(s) | 636, 703, 790, 812, 1313 |
| MluNI | TGGCCA | 1 cut(s) | 1179 |
| MlyI | GAGTC | 3 cut(s) | 520, 556, 605 |
| MmeI | TCCRAC | 1 cut(s) | 99 |
| Mox20I | TGGCCA | 1 cut(s) | 1179 |
| Mph1103I | ATGCAT | 1 cut(s) | 1373 |
| MroNI | GCCGGC | 4 cut(s) | 199, 283, 367, 451 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1051 |
| MscI | TGGCCA | 1 cut(s) | 1179 |
| MseI | TTAA | 3 cut(s) | 765, 1101, 1380 |
| MslI | CAYNNNNRTG | 2 cut(s) | 615, 1341 |
| Msp20I | TGGCCA | 1 cut(s) | 1179 |
| MspR9I | CCNGG | 2 cut(s) | 963, 1400 |
| Mva1269I | GAATGC | 1 cut(s) | 628 |
| MvaI | CCWGG | 2 cut(s) | 963, 1400 |
| MvnI | CGCG | 1 cut(s) | 1131 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 871 |
| NaeI | GCCGGC | 4 cut(s) | 201, 285, 369, 453 |
| NdeI | CATATG | 1 cut(s) | 16 |
| NdeII | GATC | 1 cut(s) | 1333 |
| NgoMIV | GCCGGC | 4 cut(s) | 199, 283, 367, 451 |
| NlaIII | CATG | 5 cut(s) | 614, 677, 953, 1346, 1375 |
| NlaIV | GGNNCC | 2 cut(s) | 967, 1396 |
| NmeAIII | GCCGAG | 1 cut(s) | 1006 |
| NsiI | ATGCAT | 1 cut(s) | 1373 |
| NspI | RCATGY | 1 cut(s) | 1375 |
| PaeI | GCATGC | 1 cut(s) | 1375 |
| PagI | TCATGA | 1 cut(s) | 1342 |
| PctI | GAATGC | 1 cut(s) | 628 |
| PdiI | GCCGGC | 4 cut(s) | 201, 285, 369, 453 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1051 |
| Pfl23II | CGTACG | 1 cut(s) | 819 |
| PflFI | GACNNNGTC | 1 cut(s) | 70 |
| PkrI | GCNGC | 4 cut(s) | 289, 373, 457, 1000 |
| PleI | GAGTC | 3 cut(s) | 520, 556, 604 |
| PmaCI | CACGTG | 1 cut(s) | 1293 |
| PmlI | CACGTG | 1 cut(s) | 1293 |
| PpsI | GAGTC | 3 cut(s) | 520, 556, 604 |
| Ppu21I | YACGTR | 1 cut(s) | 1293 |
| PshBI | ATTAAT | 1 cut(s) | 765 |
| Psp6I | CCWGG | 2 cut(s) | 961, 1398 |
| PspCI | CACGTG | 1 cut(s) | 1293 |
| PspEI | GGTNACC | 3 cut(s) | 154, 238, 406 |
| PspGI | CCWGG | 2 cut(s) | 961, 1398 |
| PspLI | CGTACG | 1 cut(s) | 819 |
| PspN4I | GGNNCC | 2 cut(s) | 967, 1396 |
| PspPI | GGNCC | 2 cut(s) | 928, 946 |
| PstI | CTGCAG | 1 cut(s) | 1003 |
| PstNI | CAGNNNCTG | 1 cut(s) | 632 |
| PsyI | GACNNNGTC | 1 cut(s) | 70 |
| RsaI | GTAC | 2 cut(s) | 821, 1195 |
| RsaNI | GTAC | 2 cut(s) | 820, 1194 |
| RseI | CAYNNNNRTG | 2 cut(s) | 615, 1341 |
| SaqAI | TTAA | 3 cut(s) | 765, 1101, 1380 |
| SatI | GCNGC | 4 cut(s) | 288, 372, 456, 999 |
| Sau3AI | GATC | 1 cut(s) | 1333 |
| Sau96I | GGNCC | 2 cut(s) | 928, 946 |
| SchI | GAGTC | 3 cut(s) | 520, 556, 605 |
| ScrFI | CCNGG | 2 cut(s) | 963, 1400 |
| SfaNI | GCATC | 2 cut(s) | 852, 997 |
| SfcI | CTRYAG | 1 cut(s) | 999 |
| SinI | GGWCC | 1 cut(s) | 946 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 615, 1341 |
| SmlI | CTYRAG | 1 cut(s) | 1072 |
| SmoI | CTYRAG | 1 cut(s) | 1072 |
| SphI | GCATGC | 1 cut(s) | 1375 |
| Sse9I | AATT | 5 cut(s) | 636, 703, 790, 812, 1313 |
| SspMI | CTAG | 3 cut(s) | 774, 887, 918 |
| StyD4I | CCNGG | 2 cut(s) | 961, 1398 |
| StyI | CCWWGG | 2 cut(s) | 880, 1349 |
| TaaI | ACNGT | 4 cut(s) | 100, 578, 958, 970 |
| TaiI | ACGT | 2 cut(s) | 74, 1295 |
| TasI | AATT | 5 cut(s) | 636, 703, 790, 812, 1313 |
| TatI | WGTACW | 1 cut(s) | 1193 |
| TauI | GCSGC | 3 cut(s) | 290, 374, 458 |
| Tru1I | TTAA | 3 cut(s) | 765, 1101, 1380 |
| Tru9I | TTAA | 3 cut(s) | 765, 1101, 1380 |
| TscAI | CASTG | 1 cut(s) | 961 |
| TseI | GCWGC | 1 cut(s) | 998 |
| TspDTI | ATGAA | 1 cut(s) | 1035 |
| TspGWI | ACGGA | 1 cut(s) | 1052 |
| TspRI | CASTG | 1 cut(s) | 961 |
| Tth111I | GACNNNGTC | 1 cut(s) | 70 |
| VpaK11BI | GGWCC | 1 cut(s) | 946 |
| VspI | ATTAAT | 1 cut(s) | 765 |
| XapI | RAATTY | 2 cut(s) | 790, 1313 |
| XbaI | TCTAGA | 1 cut(s) | 886 |
| XceI | RCATGY | 1 cut(s) | 1375 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 166, 250, 334, 1290 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1051 |
| XspI | CTAG | 3 cut(s) | 774, 887, 918 |
| Zsp2I | ATGCAT | 1 cut(s) | 1373 |