Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

2702973 .. 2704814

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGAAATGCGTCGGAGAATTTCGATATTGAAGATCTCATGTCTTATGGAGACGATTTGATCAACTTATTGAATGTTAAGAATGGTTTTGATATTATATCTCAAAGTTCTGAGCAGTTCAAAGCTCTCAATTTTGCTTGCCATGAGGATTTCAATCAGATACAAGGCTCTATTGAAGATTGTAAGACGAAACTCTATGCTTGTAAGAAGAAAACTGAGGAAGCATATTCAGATATTGCGGCTGAAGATGAAATTGAACGTCTTCAGAAAGAGCTTGACGAAGAGATGGAACGGGAGTTCAAGCTAAAAGACGAGCTTAGACTAGTCGCTGATGAACTCAAGGACCTGAATGCTCAATTGTCATCGATAGATGAACATAAGCAATCTACAAAGAGAAAAGTGAGGGACGACTTGAGAGCTGAGAAAAAGCTATCAATGTATGCTTCTGTCACGAACGTTATACCGGACATTGATGATCCATCAAAGATCTCAGGCTATATGGTAGATCGTGAAAAGAGGCTAATTGAGAAGTTTCAATTCGAGACAAATAAGATGACGGCATACGAGACATGTAACAGTATCTGGAGCATCATAAACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc24

Protein Analysis

201

Amino Acids

23.33

Weight (kDa)

4.69

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	2 cut(s)	248, 264
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	8 cut(s)	32, 73, 121, 154, 176, 257, 301, 536
AhlI	ACTAGT	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	6 cut(s)	125, 274, 304, 316, 419, 430
AluI	AGCT	6 cut(s)	125, 274, 304, 316, 419, 430
Alw26I	GTCTC	3 cut(s)	45, 536, 560
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	582
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	254
BccI	CCATC	2 cut(s)	280, 487
BceAI	ACGGC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	60
BcoDI	GTCTC	3 cut(s)	45, 536, 560
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	1 cut(s)	323
BglII	AGATCT	2 cut(s)	34, 486
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	254
BpmI	CTGGAG	1 cut(s)	604
BpuEI	CTTGAG	2 cut(s)	323, 433
Bsa29I	ATCGAT	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	365
BseJI	GATNNNNATC	1 cut(s)	153
BseMII	CTCAG	4 cut(s)	102, 207, 411, 504
BshVI	ATCGAT	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	419
BsmAI	GTCTC	3 cut(s)	45, 536, 560
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	34, 60, 475, 486, 505
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	4 cut(s)	103, 208, 412, 503
BspDI	ATCGAT	1 cut(s)	365
BspPI	GGATC	1 cut(s)	470
BssMI	GATC	5 cut(s)	34, 60, 475, 486, 505
Bst4CI	ACNGT	1 cut(s)	578
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	5 cut(s)	111, 216, 317, 420, 490
BstKTI	GATC	5 cut(s)	37, 63, 478, 489, 508
BstMAI	GTCTC	3 cut(s)	45, 536, 560
BstMBI	GATC	5 cut(s)	34, 60, 475, 486, 505
BstNSI	RCATGY	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	34, 486
BstYI	RGATCY	2 cut(s)	34, 486
Bsu15I	ATCGAT	1 cut(s)	365
BsuTUI	ATCGAT	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	582
Cfr13I	GGNCC	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	365
CviAII	CATG	3 cut(s)	40, 143, 570
DdeI	CTNAG	5 cut(s)	111, 216, 317, 420, 490
DpnI	GATC	5 cut(s)	36, 62, 477, 488, 507
DpnII	GATC	5 cut(s)	34, 60, 475, 486, 505
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	248, 264
EcoO109I	RGGNCCY	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	43, 146, 573
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	39, 142, 569
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	604
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	3 cut(s)	43, 146, 573
HpaII	CCGG	1 cut(s)	464
Hpy188I	TCNGA	5 cut(s)	16, 112, 159, 232, 267
Hpy188III	TCNNGA	4 cut(s)	451, 509, 541, 583
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	2 cut(s)	259, 456
HpyF3I	CTNAG	5 cut(s)	111, 216, 317, 420, 490
HpySE526I	ACGT	2 cut(s)	259, 456
Hsp92II	CATG	3 cut(s)	43, 146, 573
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	34, 60, 475, 486, 505
LmnI	GCTCC	1 cut(s)	585
LpnPI	CCDG	4 cut(s)	359, 477, 477, 568
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	1 cut(s)	323
MaeII	ACGT	2 cut(s)	259, 456
MaeIII	GTNAC	2 cut(s)	448, 572
MalI	GATC	5 cut(s)	36, 62, 477, 488, 507
MboI	GATC	5 cut(s)	34, 60, 475, 486, 505
MboII	GAAGA	6 cut(s)	44, 188, 220, 254, 257, 293
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	2 cut(s)	34, 486
MluCI	AATT	6 cut(s)	19, 130, 252, 356, 522, 536
MnlI	CCTC	4 cut(s)	139, 211, 396, 510
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	78
MspI	CCGG	1 cut(s)	464
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	355
NdeII	GATC	5 cut(s)	34, 60, 475, 486, 505
NlaIII	CATG	3 cut(s)	43, 146, 573
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	573
PciI	ACATGT	1 cut(s)	569
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	343
PscI	ACATGT	1 cut(s)	569
Psp1406I	AACGTT	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	343
PspPPI	RGGWCCY	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	34, 486
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	5 cut(s)	34, 60, 475, 486, 505
Sau96I	GGNCC	1 cut(s)	343
SetI	ASST	9 cut(s)	127, 262, 276, 306, 318, 348, 421, 432, 459
SfaNI	GCATC	1 cut(s)	597
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	338, 412
SmoI	CTYRAG	2 cut(s)	338, 412
SpeI	ACTAGT	1 cut(s)	322
Sse9I	AATT	6 cut(s)	19, 130, 252, 356, 522, 536
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	2 cut(s)	262, 459
TaqI	TCGA	3 cut(s)	24, 365, 540
TasI	AATT	6 cut(s)	19, 130, 252, 356, 522, 536
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	264, 348, 387
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.