Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

25821161 .. 25823014

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1177600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAGAAGCTTCTGGAATTTTGAAGCTGATTTCGTACAGCGACGATCTGGTGAAGGTGTTGAAGGACGAGAGGGACATCAACAACTTGGCGCAGTGTCTCCAGCACCGCGAGGCCCTCCGCTCCTCCTGCGATTCCGATTTCAATGAAGTCCAGAACTCGCTTCGAGACTACCAAATAAAGACAGATGAATGCAAGCGGAAAACCGAGGCAGCAAAATTGGAAGTTGTTGCTGATGAAGAGCTAGACCGTCTTCAAAGAGAGTTTGATGTGGATGCTGAAATAGAAAGTTTGCTTATGGAGGAGCTTAGCACAGTTATAGGCAGCGAGATTAGTGATTTAGAACGCCAAAGGATTGATGTTCAGGAGAAAAAGCGAAACTTGAAGAGGCGTGAGCAAGATGAGTTCAGGGAACAGAGGAAGCTTGCCATGTATGCTTCTGTCACAAACATTATACCAAACCTGGAAGATCAATCGCGTGATATGGGCTATATAGTGGATAGCAATAAGAAAATTGTTCAGAAGTTTGAATTCGACCCAACAAAGACGACTGCCTTCCAAACATGTGATAGCGTTTGGAAGATGATAGCTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

23.04

Weight (kDa)

4.79

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	2 cut(s)	111, 478
AciI	CCGC	3 cut(s)	109, 121, 199
AcsI	RAATTY	2 cut(s)	18, 530
AfaI	GTAC	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	563
AgsI	TTSAA	6 cut(s)	25, 64, 145, 257, 385, 530
AjnI	CCWGG	1 cut(s)	462
AluBI	AGCT	6 cut(s)	11, 28, 244, 307, 424, 590
AluI	AGCT	6 cut(s)	11, 28, 244, 307, 424, 590
Alw26I	GTCTC	2 cut(s)	104, 162
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	212, 324
ApoI	RAATTY	2 cut(s)	18, 530
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	224, 336
BciT130I	CCWGG	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	104, 162
BfaI	CTAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	213, 325
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	214, 326
Bme1390I	CCNGG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	115, 317
BseXI	GCAGC	2 cut(s)	224, 336
Bsh1236I	CGCG	2 cut(s)	111, 478
BshFI	GGCC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	104, 162
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	46, 469
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	3 cut(s)	109, 121, 199
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	2 cut(s)	111, 478
BspQI	GCTCTTC	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	46, 469
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	251, 316
Bst6I	CTCTTC	2 cut(s)	234, 380
BstC8I	GCNNGC	2 cut(s)	197, 426
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	2 cut(s)	111, 478
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	49, 472
BstMAI	GTCTC	2 cut(s)	104, 162
BstMBI	GATC	2 cut(s)	46, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 434
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	462
BstUI	CGCG	2 cut(s)	111, 478
BstV1I	GCAGC	2 cut(s)	224, 336
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	197, 426
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	430, 564
CviJI	RGCY	8 cut(s)	11, 28, 116, 244, 307, 424, 489, 590
CviKI_1	RGCY	8 cut(s)	11, 28, 116, 244, 307, 424, 489, 590
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	2 cut(s)	48, 471
DpnII	GATC	2 cut(s)	46, 469
Eam1104I	CTCTTC	2 cut(s)	234, 380
EarI	CTCTTC	2 cut(s)	234, 380
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	2 cut(s)	433, 567
FaiI	YATR	9 cut(s)	299, 320, 431, 435, 455, 485, 492, 494, 565
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	429, 563
Fnu4HI	GCNGC	2 cut(s)	213, 325
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	213, 325
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	213, 325
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	433, 567
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	2 cut(s)	9, 422
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	139, 522
Hpy188III	TCNNGA	5 cut(s)	15, 154, 167, 365, 594
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	49, 58, 565
HpyCH4III	ACNGT	2 cut(s)	251, 316
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 434
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	433, 567
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	46, 469
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	128, 304
LpnPI	CCDG	8 cut(s)	35, 116, 142, 167, 350, 394, 449, 476
Lsp1109I	GCAGC	2 cut(s)	224, 336
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	2 cut(s)	48, 471
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	46, 469
MboII	GAAGA	5 cut(s)	245, 251, 397, 479, 592
MluCI	AATT	4 cut(s)	18, 218, 513, 530
MnlI	CCTC	8 cut(s)	66, 106, 128, 136, 202, 295, 381, 411
MspR9I	CCNGG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	111, 478
MwoI	GCNNNNNNNGC	2 cut(s)	129, 434
NdeII	GATC	2 cut(s)	46, 469
NlaIII	CATG	2 cut(s)	433, 567
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	567
PciI	ACATGT	1 cut(s)	563
PciSI	GCTCTTC	1 cut(s)	234
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	214, 326
PscI	ACATGT	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	115
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	2 cut(s)	213, 325
Sau3AI	GATC	2 cut(s)	46, 469
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	8 cut(s)	13, 30, 60, 246, 309, 426, 465, 592
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	18, 218, 513, 530
SsiI	CCGC	3 cut(s)	109, 121, 199
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	251, 316
TaqI	TCGA	2 cut(s)	166, 534
TasI	AATT	4 cut(s)	18, 218, 513, 530
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	212, 324
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	162, 204, 252
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	18, 530
XceI	RCATGY	1 cut(s)	567
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.