Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

40006918 .. 40008139

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGACGCTTCTGGAACACTCGACATCCAGTGGCTGATCTCCAACAGCGACGACCTTGTGCGGGTCTTGAAGGACACCAGAGACCTCAGCCACTTGACCCACTGCCTCCAAAACTCCCAAGCCCTCCGCTCCTCCTCCGATTCCGATTTCGCCGAAGCTCACAACTTGCTCCGAGATTATGAGAAGAAGTTAGATGCTTGCAAGAAGAAAACCGAGGAGGCGAAAACCGAGGCGGTTGCTGATGAGGAATTGGAGCTTCTTCGGAGAGAATTGGATGAGGGGATGGATGATTTGGAAGGCCAAAGGGTTGCGGTTTTGGAGAAGAAGAAAATGTTGAAGAAACAGAAGCAGGATGAGTTCAGGGCGCAGAGGAAGCTTTCCATGTATGCTTCTGTTACAAATATTATACCAAACCTGGATGATCAGTCAAGAGTCGTGGGCTATATTGTGGATAGAGATACAAAAGCGGTACAGAACTTTGAAATTGATGCAGAGAAGATGACTGCCTATGAAACATGTAATAGCATTTGGAAGATGATAACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.0

Weight (kDa)

5.02

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AciI	CCGC	6 cut(s)	5, 64, 130, 236, 314, 470
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	73, 340, 485
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	161, 259, 379
AluI	AGCT	3 cut(s)	161, 259, 379
Alw26I	GTCTC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	370
BbvCI	CCTCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	187, 481
Bpu10I	CCTNAGC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	216, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	216, 231
BseGI	GGATG	6 cut(s)	27, 283, 291, 295, 361, 427
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	3 cut(s)	124, 127, 233
BshFI	GGCC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	39, 424
BspACI	CCGC	6 cut(s)	5, 64, 130, 236, 314, 470
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	216, 231
BssMI	GATC	2 cut(s)	39, 424
Bst2UI	CCWGG	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	89
BstF5I	GGATG	6 cut(s)	27, 283, 291, 295, 361, 427
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	2 cut(s)	42, 427
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	39, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	6 cut(s)	27, 283, 291, 295, 361, 427
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	38, 103
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	370
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	473
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	3 cut(s)	385, 519, 549
CviJI	RGCY	8 cut(s)	37, 93, 125, 161, 259, 303, 379, 444
CviKI_1	RGCY	8 cut(s)	37, 93, 125, 161, 259, 303, 379, 444
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	2 cut(s)	41, 426
DpnII	GATC	2 cut(s)	39, 424
EciI	GGCGGA	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	417
FaeI	CATG	3 cut(s)	388, 522, 552
FaiI	YATR	8 cut(s)	183, 386, 390, 410, 447, 513, 520, 550
FatI	CATG	3 cut(s)	384, 518, 548
FauI	CCCGC	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	424
FokI	GGATG	6 cut(s)	14, 290, 298, 302, 368, 434
GlaI	GCGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	303
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	388, 522, 552
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	143, 435
Hpy188I	TCNGA	4 cut(s)	142, 148, 176, 267
Hpy188III	TCNNGA	3 cut(s)	15, 70, 432
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	67, 293
HpyCH4V	TGCA	2 cut(s)	204, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	388, 522, 552
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	39, 424
LmnI	GCTCC	3 cut(s)	137, 177, 256
LpnPI	CCDG	6 cut(s)	44, 94, 338, 349, 404, 431
LweI	GCATC	2 cut(s)	187, 481
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	41, 426
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	2 cut(s)	39, 424
MboII	GAAGA	8 cut(s)	199, 220, 254, 337, 340, 352, 511, 547
MluCI	AATT	3 cut(s)	251, 272, 486
MlyI	GAGTC	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	2 cut(s)	39, 424
NlaIII	CATG	3 cut(s)	388, 522, 552
NspI	RCATGY	1 cut(s)	522
PciI	ACATGT	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	143
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
Sau3AI	GATC	2 cut(s)	39, 424
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	419
SetI	ASST	6 cut(s)	60, 90, 163, 261, 381, 420
SfaNI	GCATC	2 cut(s)	187, 481
Sse9I	AATT	3 cut(s)	251, 272, 486
SsiI	CCGC	6 cut(s)	5, 64, 130, 236, 314, 470
SspI	AATATT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	417
TaqI	TCGA	1 cut(s)	24
TasI	AATT	3 cut(s)	251, 272, 486
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	2 cut(s)	38, 110
TspDTI	ATGAA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	38, 110
XceI	RCATGY	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.