RchiOBHm_Chr3g0462171

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
9939928 .. 9941287
1360 bp
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UTR
Exon/CDS
Intron
PRQ42856

Sequence Viewer

Length: 267 bp
ATGGATGATTTGGAAGGCCAAAGGGTTGCGGTTTTGGAAAAGAAGAAAATGTTGAAGAAACAGAAGCAGGATGAGTTCAGGGCGCAGAGGAAGCTTTCTATGTATGCTTCTGTTACAAATATTATACCAAACCTGGATGATCAGTCAAGAGTCATGGGCTATATTGTGGATAGAGATACAAAAGCGGTACAGAACTTTGAAATTGATGCAGAGAAGGTGACTGCCTATGAAACATGTAATAGCATTTGGAAGATGATAACTCCATAA

Protein Analysis

88

Amino Acids

10.26

Weight (kDa)

7.8

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 185
AfaI GTAC 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 55, 200
AjnI CCWGG 1 cut(s) 132
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AoxI GGCC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 134
BclI TGATCA 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 196
BseBI CCWGG 1 cut(s) 134
BseGI GGATG 3 cut(s) 10, 76, 142
BshFI GGCC 1 cut(s) 18
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 29, 185
BspANI GGCC 1 cut(s) 18
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 10, 76, 142
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 132
BsuRI GGCC 1 cut(s) 18
BtsCI GGATG 3 cut(s) 10, 76, 142
CfoI GCGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 154, 234
CviJI RGCY 3 cut(s) 18, 94, 159
CviKI_1 RGCY 3 cut(s) 18, 94, 159
CviQI GTAC 1 cut(s) 188
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 157, 237
FaiI YATR 8 cut(s) 101, 105, 125, 155, 162, 228, 235, 265
FatI CATG 2 cut(s) 153, 233
FbaI TGATCA 1 cut(s) 139
FokI GGATG 3 cut(s) 17, 83, 149
GlaI GCGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 18
HhaI GCGC 1 cut(s) 85
Hin1II CATG 2 cut(s) 157, 237
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 150
HphI GGTGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 2 cut(s) 8, 208
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
Hsp92II CATG 2 cut(s) 157, 237
HspAI GCGC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 53, 64, 119, 146
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 112, 217
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 55, 67, 262
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 157, 237
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 237
PciI ACATGT 1 cut(s) 233
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 134
SetI ASST 3 cut(s) 96, 135, 219
SfaNI GCATC 1 cut(s) 196
SgeI CNNG 7 cut(s) 80, 91, 145, 146, 159, 166, 246
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 29, 185
SspI AATATT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 132
TasI AATT 1 cut(s) 201
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 243
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.