Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

25488844 .. 25490666

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1163700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAGAAGCTTCTGGAATTTCGAAGCTGATTTCGTACAGCGACGATCTGGTGAAGGTGTTGAAGGACCATAGGGACATCAACAACTTGGCGCAGTGTCTCCAGCACTTCAAGGCCCTCCGCTCCTCCTGCGATTCCGATTTCAATGAAGTCCAGAACTCGCTTCGAGACTATGAGATAAAGACAGATGAATGCAAGCAGAAAACCGAGGCGGCAAAATCGGAGGTTGTTGCTGATGAAGAGTTAGACCGTCTTCAGAGAGAGTTTGATGGGGATGCTGAAATAGAAATTCTAGGCAACGAGATTAGTGAGTTTGAACGCCAAAGGATTTCTGTTCGGGAGAAAAAGCGAAACTTGAAGAGACACGAGCAAGATGAGTTCAGGGAACAGAGGAAGCTCTCCATGTATGCTTCTGTCACAAACATTATACCAAACCTGGAAAATAAGTCGCGTGATATGGGTTATATTGTGGATAGCAATAAGAAAATTGTTCAGAAGTTTGAATTTGATCCAACAAAGATGACTGCCTCTGAAACATGTGATAGCATTTGGAAGATGATATCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.99

Weight (kDa)

5.19

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	451
AciI	CCGC	2 cut(s)	121, 212
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	3 cut(s)	18, 288, 503
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	64, 112, 145, 317, 358, 503
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	11, 28, 397
AluI	AGCT	3 cut(s)	11, 28, 397
Alw26I	GTCTC	3 cut(s)	104, 162, 355
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	1 cut(s)	114
ApoI	RAATTY	3 cut(s)	18, 288, 503
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	67, 115
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	245
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	437
BcoDI	GTCTC	3 cut(s)	104, 162, 355
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 115
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	437
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	3 cut(s)	104, 162, 355
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	46, 508
BspACI	CCGC	2 cut(s)	121, 212
BspANI	GGCC	1 cut(s)	116
BspFNI	CGCG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	566
BspPI	GGATC	1 cut(s)	503
BspT104I	TTCGAA	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	46, 508
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	2 cut(s)	234, 353
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	49, 511
BstMAI	GTCTC	3 cut(s)	104, 162, 355
BstMBI	GATC	2 cut(s)	46, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	435
BstUI	CGCG	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	566
CfoI	GCGC	1 cut(s)	94
Cfr13I	GGNCC	2 cut(s)	67, 115
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	3 cut(s)	403, 537, 567
CviJI	RGCY	4 cut(s)	11, 28, 116, 397
CviKI_1	RGCY	4 cut(s)	11, 28, 116, 397
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	48, 510
DpnII	GATC	2 cut(s)	46, 508
Eam1104I	CTCTTC	2 cut(s)	234, 353
EarI	CTCTTC	2 cut(s)	234, 353
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	561
FaeI	CATG	3 cut(s)	406, 540, 570
FaiI	YATR	9 cut(s)	72, 174, 404, 408, 428, 458, 465, 538, 568
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	402, 536, 566
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	406, 540, 570
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	134
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	5 cut(s)	139, 223, 258, 495, 532
Hpy188III	TCNNGA	5 cut(s)	15, 154, 167, 338, 567
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	49, 58
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	406, 540, 570
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	46, 508
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	35, 116, 142, 167, 367, 422, 449
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	48, 510
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	2 cut(s)	46, 508
MboII	GAAGA	5 cut(s)	245, 251, 370, 555, 565
MluCI	AATT	4 cut(s)	18, 288, 486, 503
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	128, 136, 202, 217, 384, 538
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	2 cut(s)	46, 508
NlaIII	CATG	3 cut(s)	406, 540, 570
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	540
NspV	TTCGAA	1 cut(s)	23
PagI	TCATGA	1 cut(s)	566
PciI	ACATGT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	435
PspGI	CCWGG	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	67, 115
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	46, 508
Sau96I	GGNCC	2 cut(s)	67, 115
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	6 cut(s)	13, 30, 60, 228, 399, 438
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	4 cut(s)	18, 288, 486, 503
SsiI	CCGC	2 cut(s)	121, 212
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	23, 166
TasI	AATT	4 cut(s)	18, 288, 486, 503
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	4 cut(s)	162, 204, 252, 555
TspRI	CASTG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	3 cut(s)	18, 288, 503
XceI	RCATGY	1 cut(s)	540
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.