Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

220974 .. 222798

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGAGATCAGTCGAGGAATTTCGAAATGGTAATTTCATGGGGAGATGAATTGATCCATGTTTTGGATGATAGGAAAGGATTTGACGTGTTGGTACAAACTCTCGAGCAACTGAGAGCTATTCCATTCTCCTGCGACGAAGATTTTAAAGAGATACATGAATCTCTCCAAGATTTGCAGAAGAAACTCGATGTTTGCAAGGAGAAGACAGATGAGGCAAATTCAGAGATTGCGGATGAAGAAGAAATTGAGCGTCTTCAGAAAGAGCTTGATGAAGAGCTAGAACTAGAGTGCAAGCTGAAGGAGGAGCTTAGATTCATAGCTGATGAACTCAAAGACCTGAATTCTCAGGAGGCATTATTTGAAGAGCACAGATTAGCTATAAAGAGGAACAAGCGGGACCAGTTGAGAACCGAGACAAAGCTTCCTATGTATGCTTCTGTCACTCGAGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTATATGGTTGGTCGAGACAAAAGGCTAATGGACAAGTTCGAATTCGATTCAAACAAGAGTACTTCTGTCTACGAGACATGTAATGAACGAATTGGAGAGGAGCAAATTCTGACTGTGATTGGAATAGCAAACTTGGGGACTGTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.76

Weight (kDa)

4.63

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	558
AciI	CCGC	2 cut(s)	233, 397
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	5 cut(s)	19, 220, 343, 530, 594
AcuI	CTGAAG	2 cut(s)	242, 320
AfaI	GTAC	2 cut(s)	96, 550
AfiI	CCNNNNNNNGG	1 cut(s)	64
AflIII	ACRYGT	2 cut(s)	87, 566
AgsI	TTSAA	3 cut(s)	365, 478, 540
AjiI	CACGTC	1 cut(s)	88
AluBI	AGCT	8 cut(s)	119, 268, 280, 298, 310, 323, 380, 424
AluI	AGCT	8 cut(s)	119, 268, 280, 298, 310, 323, 380, 424
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	410, 498, 557
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	104, 447
ApoI	RAATTY	5 cut(s)	19, 220, 343, 530, 594
AspS9I	GGNCC	1 cut(s)	400
AsuII	TTCGAA	2 cut(s)	24, 528
AvaI	CYCGRG	2 cut(s)	104, 447
AvaII	GGWCC	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	484
BbsI	GAAGAC	3 cut(s)	212, 248, 485
Bbv12I	GWGCWC	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	410, 498, 557
BfaI	CTAG	2 cut(s)	281, 287
BmcAI	AGTACT	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	2 cut(s)	104, 447
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	401
BpiI	GAAGAC	3 cut(s)	212, 248, 485
Bpu14I	TTCGAA	2 cut(s)	24, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	73, 241
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	3 cut(s)	104, 362, 498
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	320, 602
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	2 cut(s)	104, 447
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	410, 498, 557
BsmFI	GGGAC	1 cut(s)	413
BsoBI	CYCGRG	2 cut(s)	104, 447
Bsp119I	TTCGAA	2 cut(s)	24, 528
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	7, 54
BspACI	CCGC	2 cut(s)	233, 397
BspCNI	CTCAG	3 cut(s)	105, 361, 497
BspLI	GGNNCC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	2 cut(s)	270, 360
BspT104I	TTCGAA	2 cut(s)	24, 528
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	7, 54
Bst4CI	ACNGT	2 cut(s)	604, 631
Bst6I	CTCTTC	2 cut(s)	270, 360
BstBI	TTCGAA	2 cut(s)	24, 528
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	5 cut(s)	113, 311, 348, 484, 636
BstF5I	GGATG	2 cut(s)	73, 241
BstKTI	GATC	2 cut(s)	10, 57
BstMAI	GTCTC	3 cut(s)	410, 498, 557
BstMBI	GATC	2 cut(s)	7, 54
BstNSI	RCATGY	1 cut(s)	570
BstV2I	GAAGAC	3 cut(s)	212, 248, 485
Bsu36I	CCTNAGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	73, 241
Cac8I	GCNNGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	400
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	95, 549
CviAII	CATG	4 cut(s)	39, 59, 158, 567
CviQI	GTAC	2 cut(s)	95, 549
DdeI	CTNAG	5 cut(s)	113, 311, 348, 484, 636
DpnI	GATC	2 cut(s)	9, 56
DpnII	GATC	2 cut(s)	7, 54
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	270, 360
EarI	CTCTTC	2 cut(s)	270, 360
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	242, 320
Eco81I	CCTNAGG	1 cut(s)	484
Eco88I	CYCGRG	2 cut(s)	104, 447
EcoRI	GAATTC	2 cut(s)	343, 530
FaeI	CATG	4 cut(s)	42, 62, 161, 570
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	38, 58, 157, 566
FauI	CCCGC	1 cut(s)	390
FblI	GTMKAC	1 cut(s)	558
FokI	GGATG	2 cut(s)	80, 248
FspBI	CTAG	2 cut(s)	281, 287
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	42, 62, 161, 570
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	161, 315, 470, 536
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	226, 261, 600
Hpy188III	TCNNGA	3 cut(s)	104, 350, 503
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	604, 631
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	178, 198, 294
HpyF3I	CTNAG	5 cut(s)	113, 311, 348, 484, 636
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	42, 62, 161, 570
Kzo9I	GATC	2 cut(s)	7, 54
LguI	GCTCTTC	2 cut(s)	270, 360
LmnI	GCTCC	2 cut(s)	307, 589
LpnPI	CCDG	5 cut(s)	145, 335, 353, 416, 471
MaeI	CTAG	2 cut(s)	281, 287
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	442, 631
MalI	GATC	2 cut(s)	9, 56
MboI	GATC	2 cut(s)	7, 54
MboII	GAAGA	9 cut(s)	152, 193, 217, 248, 251, 254, 287, 377, 490
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	9 cut(s)	19, 33, 50, 220, 246, 343, 530, 579, 594
MnlI	CCTC	7 cut(s)	9, 208, 298, 346, 381, 493, 580
MseI	TTAA	1 cut(s)	147
NdeII	GATC	2 cut(s)	7, 54
NlaIII	CATG	4 cut(s)	42, 62, 161, 570
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	570
NspV	TTCGAA	2 cut(s)	24, 528
PaeR7I	CTCGAG	2 cut(s)	104, 447
PciI	ACATGT	1 cut(s)	566
PciSI	GCTCTTC	2 cut(s)	270, 360
PfeI	GAWTC	4 cut(s)	161, 315, 470, 536
PflMI	CCANNNNNTGG	1 cut(s)	64
PscI	ACATGT	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	401
PspPI	GGNCC	1 cut(s)	400
PspXI	VCTCGAGB	1 cut(s)	447
RsaI	GTAC	2 cut(s)	96, 550
RsaNI	GTAC	2 cut(s)	95, 549
SapI	GCTCTTC	2 cut(s)	270, 360
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	7, 54
Sau96I	GGNCC	1 cut(s)	400
ScaI	AGTACT	1 cut(s)	550
SduI	GDGCHC	1 cut(s)	372
Sfr274I	CTCGAG	2 cut(s)	104, 447
SfuI	TTCGAA	2 cut(s)	24, 528
SinI	GGWCC	1 cut(s)	400
SlaI	CTCGAG	2 cut(s)	104, 447
SmlI	CTYRAG	2 cut(s)	104, 447
SmoI	CTYRAG	2 cut(s)	104, 447
Sse9I	AATT	9 cut(s)	19, 33, 50, 220, 246, 343, 530, 579, 594
SsiI	CCGC	2 cut(s)	233, 397
SspMI	CTAG	2 cut(s)	281, 287
TaaI	ACNGT	2 cut(s)	604, 631
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	8 cut(s)	14, 24, 105, 189, 448, 502, 528, 534
TasI	AATT	9 cut(s)	19, 33, 50, 220, 246, 343, 530, 579, 594
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	4 cut(s)	161, 315, 470, 536
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	9 cut(s)	27, 63, 174, 252, 288, 307, 342, 462, 588
Van91I	CCANNNNNTGG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	400
XapI	RAATTY	5 cut(s)	19, 220, 343, 530, 594
XceI	RCATGY	1 cut(s)	570
XhoI	CTCGAG	2 cut(s)	104, 447
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	2 cut(s)	281, 287
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.