Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007627.1

Orthogroup ID

OG0006205

Physical Location & Seq

Genomic Coordinates Forward (+)

19314 .. 19959

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007627.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atggatgatttggaaggccaaagggttgcggttttggaaaagaagaaaatgttgaagaaacagaagcaggatgagttcagggcgcagaggaagctttccatgtatgcgtctgttacaaatattataccaaacctggatgatcagtcaagagtcatgggctatattgtggatagagatacaaaagcggtacagaactttgaaattgatgcagagaagatgactgcctatgaaacatgtaatagcatttggaagatgataactccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0009653 GO:0009888 GO:0009933 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048507 GO:0048518 GO:0048522 GO:0048532 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0051781 GO:0051983 GO:0065007 GO:0098687

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.29

Weight (kDa)

7.8

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08880 AT5G01570 AT5G01570 AT5G01570 AT5G01570 AT5G01570
fragaria_vesca	FvH4_6g10920 FvH4_6g10921
malus_domestica	MD04G1163700.v1.1 MD12G1177600.v1.1
prunus_persica	Prupe.6G283000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462171 RchiOBHm_Chr3g0462181
rosa_laevigata	RLG00000024879
rosa_multiflora	Rmu_sc0006715.1_g000004 Rmu_sc0007627.1_g000007 Rmu_sc0007627.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417700
rosa_rugosa	Rorug03G0054800
rosa_samantha	Rh3AG113500 Rh3AG113600 Rh3BG116300 Rh3BG116400 Rh3CG119300 Rh3CG119400 Rh3DG118200
rosa_wichuraiana	Rw3G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	29, 185
AfaI	GTAC	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	55, 200
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
AoxI	GGCC	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	3 cut(s)	10, 76, 142
BshFI	GGCC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	2 cut(s)	29, 185
BspANI	GGCC	1 cut(s)	18
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	10, 76, 142
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	10, 76, 142
CfoI	GCGC	1 cut(s)	85
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	4 cut(s)	100, 154, 234, 264
CviJI	RGCY	3 cut(s)	18, 94, 159
CviKI_1	RGCY	3 cut(s)	18, 94, 159
CviQI	GTAC	1 cut(s)	188
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	4 cut(s)	103, 157, 237, 267
FaiI	YATR	8 cut(s)	101, 105, 125, 155, 162, 228, 235, 265
FatI	CATG	4 cut(s)	99, 153, 233, 263
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	3 cut(s)	17, 83, 149
GlaI	GCGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	18
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	103, 157, 237, 267
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
Hsp92II	CATG	4 cut(s)	103, 157, 237, 267
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	4 cut(s)	53, 64, 119, 146
LweI	GCATC	1 cut(s)	196
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	55, 67, 226, 262
MluCI	AATT	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	103, 157, 237, 267
NspI	RCATGY	1 cut(s)	237
PciI	ACATGT	1 cut(s)	233
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	2 cut(s)	96, 135
SfaNI	GCATC	1 cut(s)	196
SgeI	CNNG	8 cut(s)	80, 91, 112, 145, 146, 159, 166, 246
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	29, 185
SspI	AATATT	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	132
TasI	AATT	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	243
XceI	RCATGY	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.